MD16G1231800.v1.1
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000240
Physical Location & Seq
Reverse (-)
23802780 .. 23805409
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1231800.v1.1.491

Sequence Viewer

Length: 270 bp
ATGCTTGGACACCTTCATCTGGAGTACTACCACCAAAGACGAGAGGAATCTATAGGACAAATTGATTTAGATGATGAGGAAGAAAGTGAGACCATGCAGGATCTAAGGCAAGCTACTACGAAGGGAAAAAAAGAGCGGCTAACCAAGGAGAATTGCAAAAGAAGAAGGTTGATAAGAAAGGGAAAAAAATTGGAGGTGCTACAAAACTTTGTGGTCAAATTGACCGTCTTGTTGAAGCTTATGAAACTAGGAGTTCTGCAAATTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

90

Amino Acids

10.63

Weight (kDa)

9.52

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 136
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 261
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 2 cut(s) 113, 238
AluI AGCT 2 cut(s) 113, 238
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 108
ApoI RAATTY 1 cut(s) 261
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 136
BspPI GGATC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 104
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 25
CviAII CATG 1 cut(s) 94
CviJI RGCY 3 cut(s) 113, 139, 238
CviKI_1 RGCY 3 cut(s) 113, 139, 238
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 53, 95, 242
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 248
GluI GCNGC 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 41
Hin1II CATG 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 20
HpyAV CCTTC 3 cut(s) 23, 115, 159
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 97, 156, 259
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 5, 83
MaeI CTAG 1 cut(s) 248
MalI GATC 1 cut(s) 102
MbiI CCGCTC 1 cut(s) 136
MboI GATC 1 cut(s) 100
MboII GAAGA 2 cut(s) 92, 174
MflI RGATCY 1 cut(s) 100
MluCI AATT 5 cut(s) 60, 151, 188, 218, 261
MnlI CCTC 3 cut(s) 37, 70, 187
NdeII GATC 1 cut(s) 100
NlaIII CATG 1 cut(s) 97
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 138
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 26
SetI ASST 5 cut(s) 15, 115, 170, 198, 240
SfcI CTRYAG 1 cut(s) 51
SgeI CNNG 9 cut(s) 17, 32, 53, 106, 110, 122, 157, 241, 260
Sse9I AATT 5 cut(s) 60, 151, 188, 218, 261
SsiI CCGC 1 cut(s) 136
SspMI CTAG 1 cut(s) 248
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 226
TasI AATT 5 cut(s) 60, 151, 188, 218, 261
TatI WGTACW 1 cut(s) 24
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 47
TspDTI ATGAA 3 cut(s) 5, 254, 257
XapI RAATTY 1 cut(s) 261
XspI CTAG 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.