RchiOBHm_Chr6g0254701
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000240
Physical Location & Seq
Forward (+)
9644759 .. 9646605
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22846

Sequence Viewer

Length: 501 bp
ATGTTCATGGGTATTTCAGCCACTGGTCAGCATGCATATTCACCATCTTCTACACTACCTATCCCTAGAAGTCCACAGCAAGGTAACAATGAGGTGAACCTTGAAGGTAGTGGTGACTCTGAGGACAATGATGATTTGGCCCCCACTCTGCCTAAAAGAAAAAGAAATGAGAGAGCTGAGAAAGATAAAGGAGTAGTACCAAAAAAAAAAAAGGTGGGAAGTGCTGTTCATTTGGCTAAACAAATTAATCGAATGTGTGAGGCAATTGAGAGTAGGAGCACAGCAACTTCCATGATTAATAAAAGTGTAGAAGGTGGAGGCACCAGTATTAAGGACATGATGAAGGATGTCACCTCATTGCCTGGTATCGAGCAGGGTAATAGGTTATGGTTTTTTGCCACTCGACTGTTTTTAAGTCCAGAGAAGAGAGAGATGTATTTCACTATGGAAGATCCTAACGTGAAGTTGGAGTGGTTGAAATTTGAGATGAACGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

166

Amino Acids

18.59

Weight (kDa)

8.63

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 1 cut(s) 479
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 104, 478
AjnI CCWGG 1 cut(s) 361
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 281
AlwI GGATC 1 cut(s) 446
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 479
AseI ATTAAT 2 cut(s) 246, 297
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 33, 106, 125, 343
BanI GGYRCC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 281
BccI CCATC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 363
BfaI CTAG 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 141, 322
BmrFI CCNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 28, 324
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 111, 168
BseNI ACTGG 2 cut(s) 28, 324
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 80
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 451
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 112, 169
BspLI GGNNCC 2 cut(s) 141, 322
BspPI GGATC 1 cut(s) 446
BspT107I GGYRCC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 2 cut(s) 28, 324
BssMI GATC 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 120, 177
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 1 cut(s) 454
BstMBI GATC 1 cut(s) 451
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 197
CviAII CATG 4 cut(s) 7, 32, 292, 337
CviJI RGCY 4 cut(s) 20, 140, 176, 236
CviKI_1 RGCY 4 cut(s) 20, 140, 176, 236
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 2 cut(s) 120, 177
DpnI GATC 1 cut(s) 453
DpnII GATC 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 419
EarI CTCTTC 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 37
FaeI CATG 4 cut(s) 10, 35, 295, 340
FaiI YATR 7 cut(s) 8, 33, 37, 293, 338, 388, 446
FatI CATG 4 cut(s) 6, 31, 291, 336
FokI GGATG 1 cut(s) 359
FspBI CTAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 4 cut(s) 10, 35, 295, 340
HinfI GANTC 1 cut(s) 116
HphI GGTGA 4 cut(s) 33, 106, 125, 343
Hpy166II GTNNAC 2 cut(s) 74, 97
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 419
Hpy8I GTNNAC 2 cut(s) 74, 97
HpyAV CCTTC 3 cut(s) 98, 305, 337
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 120, 177
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 4 cut(s) 10, 35, 295, 340
Kzo9I GATC 1 cut(s) 451
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 6 cut(s) 9, 337, 348, 359, 375, 432
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 3 cut(s) 83, 113, 349
MalI GATC 1 cut(s) 453
MboI GATC 1 cut(s) 451
MboII GAAGA 3 cut(s) 39, 436, 461
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 3 cut(s) 243, 264, 479
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 5 cut(s) 85, 115, 253, 311, 364
Mph1103I ATGCAT 1 cut(s) 37
MseI TTAA 4 cut(s) 246, 297, 330, 413
MspR9I CCNGG 1 cut(s) 363
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 363
NdeII GATC 1 cut(s) 451
NlaIII CATG 4 cut(s) 10, 35, 295, 340
NlaIV GGNNCC 2 cut(s) 141, 322
NmuCI GTSAC 2 cut(s) 113, 349
NsiI ATGCAT 1 cut(s) 37
NspI RCATGY 1 cut(s) 35
PaeI GCATGC 1 cut(s) 35
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PshBI ATTAAT 2 cut(s) 246, 297
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 141, 322
PspPI GGNCC 1 cut(s) 139
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 451
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 246, 297, 330, 413
Sau3AI GATC 1 cut(s) 451
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 281
SphI GCATGC 1 cut(s) 35
Sse9I AATT 3 cut(s) 243, 264, 479
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 462
TaqI TCGA 3 cut(s) 250, 369, 403
TasI AATT 3 cut(s) 243, 264, 479
Tru1I TTAA 4 cut(s) 246, 297, 330, 413
Tru9I TTAA 4 cut(s) 246, 297, 330, 413
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 2 cut(s) 113, 349
Tsp45I GTSAC 2 cut(s) 113, 349
TspDTI ATGAA 2 cut(s) 218, 356
TspRI CASTG 1 cut(s) 28
VspI ATTAAT 2 cut(s) 246, 297
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 35
XspI CTAG 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.