Rmu_sc0008322.1_g000016
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008322.1
OG0000240
Physical Location & Seq
Reverse (-)
88732 .. 91000
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008322.1_g000016.1.cds

Sequence Viewer

Length: 1098 bp
atgggaaagaagaaatccaccaataccgaaactgagggatctggaaaacaaaaggccacatggcctgatgaggtagtagctatattttgtgatatagctgctaaggaagtggccaaaggaaataggcccggtacacattttgataaaaagggatggacaaatgttgtgttagcctttaaggagttaaccggaagggattatgataaaaagcaattgaaaaataaatgggattcgcttaaaactgattggaaattgtggagttcgctgttgcataaggaaactggtattggatgggatccggctaggaatactgtcgatgcaccggctgaatggtgggaaaccaaaatccagatcaatccagaatatcgcaaatttcgcgacgtgggaattagtcctgacatgatggctatctatgataacatgttcaagggtagcacagccctaggtcataatgtcatgattccctcagaaactatagatattgaagaggttgtggaggattctgagcataatattatttctggagatgataaagaggattatgagcaaggtaatgaatgtagagggaaaaagagaacatctgtggagcaccaaacagaggctgataaagagaaaaaaggaaaaggagttatgggagggccaaaggggaagaaagaaaagatcaatccagagtatcgcaaatttcgcgacgtgggaattagtcctgacatgatggctgtctatgataacatgttcaagggtaccacagccctaggtcacaatgtcatgattccctcagaaactatagatattgaagaggttgtggaggattctgagcataatattatttctggagatgatgaagaggattatgagcaagtcgagagtaggagtacagccacctctgttcgtaataatggtacctcacatggaactagtattcaggaggtgatgaaagttgttgcaacattaccaggagcagaaactggtaccaagttatggtggtttgcaacggagttgttctgctctcaagagaagcgagagatgttttctattatgacagatgttgatctcaagctccagtttctgattcttaatcagaaaaaagctgaaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

365

Amino Acids

41.3

Weight (kDa)

5.22

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 740, 899, 968
AccB1I GGYRCC 3 cut(s) 740, 899, 968
AccB7I CCANNNNNTGG 1 cut(s) 978
AccII CGCG 2 cut(s) 378, 687
AclWI GGATC 3 cut(s) 46, 290, 303
AcoI YGGCCR 1 cut(s) 111
AcsI RAATTY 2 cut(s) 371, 680
AfaI GTAC 5 cut(s) 133, 742, 874, 901, 970
AfiI CCNNNNNNNGG 2 cut(s) 598, 978
AflIII ACRYGT 2 cut(s) 420, 729
AgsI TTSAA 5 cut(s) 217, 427, 485, 736, 794
AhlI ACTAGT 1 cut(s) 914
AjiI CACGTC 2 cut(s) 382, 691
AjnI CCWGG 1 cut(s) 952
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 4 cut(s) 80, 98, 1057, 1088
AluI AGCT 4 cut(s) 80, 98, 1057, 1088
Alw21I GWGCWC 1 cut(s) 591
AlwI GGATC 3 cut(s) 46, 290, 303
AlwNI CAGNNNCTG 3 cut(s) 602, 965, 1066
AoxI GGCC 5 cut(s) 54, 62, 111, 125, 638
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 371, 680
Asp718I GGTACC 3 cut(s) 740, 899, 968
AspA2I CCTAGG 2 cut(s) 442, 751
AspS9I GGNCC 2 cut(s) 126, 638
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 940
AvrII CCTAGG 2 cut(s) 442, 751
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 3 cut(s) 740, 899, 968
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 1 cut(s) 85
BccI CCATC 4 cut(s) 147, 285, 397, 706
BciT130I CCWGG 1 cut(s) 954
BcnI CCSGG 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 914
BfaI CTAG 4 cut(s) 303, 443, 752, 915
BfmI CTRYAG 2 cut(s) 474, 783
BisI GCNGC 1 cut(s) 99
BlnI CCTAGG 2 cut(s) 442, 751
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 129, 954
BmgBI CACGTC 2 cut(s) 382, 691
BmgT120I GGNCC 2 cut(s) 126, 638
BmiI GGNNCC 4 cut(s) 297, 742, 901, 970
BmrFI CCNGG 2 cut(s) 129, 954
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 3 cut(s) 543, 852, 1043
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 2 cut(s) 993, 1037
BpuMI CCSGG 1 cut(s) 129
BsaBI GATNNNNATC 2 cut(s) 407, 1047
BsaJI CCNNGG 2 cut(s) 442, 751
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 978
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 3 cut(s) 286, 970, 1060
Bse8I GATNNNNATC 2 cut(s) 407, 1047
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 2 cut(s) 442, 751
BseGI GGATG 2 cut(s) 158, 296
BseJI GATNNNNATC 2 cut(s) 407, 1047
BseLI CCNNNNNNNGG 2 cut(s) 598, 978
BseMII CTCAG 5 cut(s) 24, 480, 495, 789, 804
BseNI ACTGG 3 cut(s) 286, 970, 1060
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 2 cut(s) 378, 687
BshFI GGCC 5 cut(s) 56, 64, 113, 127, 640
BshNI GGYRCC 3 cut(s) 740, 899, 968
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 4 cut(s) 129, 189, 299, 323
BslI CCNNNNNNNGG 2 cut(s) 598, 978
BsnI GGCC 5 cut(s) 56, 64, 113, 127, 640
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 5 cut(s) 38, 295, 351, 660, 1048
Bsp68I TCGCGA 2 cut(s) 378, 687
BspANI GGCC 5 cut(s) 56, 64, 113, 127, 640
BspCNI CTCAG 5 cut(s) 25, 479, 496, 788, 805
BspFNI CGCG 2 cut(s) 378, 687
BspHI TCATGA 2 cut(s) 456, 765
BspLI GGNNCC 4 cut(s) 297, 742, 901, 970
BspPI GGATC 3 cut(s) 46, 290, 303
BspT107I GGYRCC 3 cut(s) 740, 899, 968
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 3 cut(s) 286, 970, 1060
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 442, 751
BssMI GATC 5 cut(s) 38, 295, 351, 660, 1048
BssT1I CCWWGG 2 cut(s) 442, 751
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 3 cut(s) 480, 789, 837
BstDEI CTNAG 6 cut(s) 33, 102, 466, 504, 775, 813
BstF5I GGATG 2 cut(s) 158, 296
BstFNI CGCG 2 cut(s) 378, 687
BstKTI GATC 5 cut(s) 41, 298, 354, 663, 1051
BstMBI GATC 5 cut(s) 38, 295, 351, 660, 1048
BstMWI GCNNNNNNNGC 2 cut(s) 375, 684
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 2 cut(s) 424, 733
BstSCI CCNGG 2 cut(s) 127, 952
BstSFI CTRYAG 2 cut(s) 474, 783
BstUI CGCG 2 cut(s) 378, 687
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 2 cut(s) 38, 295
BstYI RGATCY 2 cut(s) 38, 295
BsuRI GGCC 5 cut(s) 56, 64, 113, 127, 640
BtrI CACGTC 2 cut(s) 382, 691
BtsCI GGATG 2 cut(s) 158, 296
BtuMI TCGCGA 2 cut(s) 378, 687
CaiI CAGNNNCTG 3 cut(s) 602, 965, 1066
CciI TCATGA 2 cut(s) 456, 765
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 126, 638
Csp6I GTAC 5 cut(s) 132, 741, 873, 900, 969
CviAII CATG 8 cut(s) 60, 400, 421, 457, 709, 730, 766, 908
CviQI GTAC 5 cut(s) 132, 741, 873, 900, 969
DdeI CTNAG 6 cut(s) 33, 102, 466, 504, 775, 813
DpnI GATC 5 cut(s) 40, 297, 353, 662, 1050
DpnII GATC 5 cut(s) 38, 295, 351, 660, 1048
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 3 cut(s) 480, 789, 837
EarI CTCTTC 3 cut(s) 480, 789, 837
Eco130I CCWWGG 2 cut(s) 442, 751
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 2 cut(s) 442, 751
ErhI CCWWGG 2 cut(s) 442, 751
FaeI CATG 8 cut(s) 63, 403, 424, 460, 712, 733, 769, 911
FatI CATG 8 cut(s) 59, 399, 420, 456, 708, 729, 765, 907
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 165, 303
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 4 cut(s) 303, 443, 752, 915
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 3 cut(s) 543, 852, 1043
HaeIII GGCC 5 cut(s) 56, 64, 113, 127, 640
HapII CCGG 4 cut(s) 129, 189, 299, 323
Hin1II CATG 8 cut(s) 63, 403, 424, 460, 712, 733, 769, 911
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 6 cut(s) 230, 460, 500, 769, 809, 1069
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 4 cut(s) 129, 189, 299, 323
HphI GGTGA 1 cut(s) 940
Hpy166II GTNNAC 2 cut(s) 134, 186
Hpy188I TCNGA 6 cut(s) 469, 505, 778, 814, 1068, 1080
Hpy8I GTNNAC 2 cut(s) 134, 186
Hpy99I CGWCG 2 cut(s) 383, 692
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 2 cut(s) 381, 690
HpyCH4V TGCA 4 cut(s) 271, 320, 944, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 375, 684
HpyF3I CTNAG 6 cut(s) 33, 102, 466, 504, 775, 813
HpySE526I ACGT 2 cut(s) 381, 690
Hsp92II CATG 8 cut(s) 63, 403, 424, 460, 712, 733, 769, 911
KpnI GGTACC 3 cut(s) 744, 903, 972
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 5 cut(s) 38, 295, 351, 660, 1048
LmnI GCTCC 3 cut(s) 586, 956, 1062
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 307
MaeI CTAG 4 cut(s) 303, 443, 752, 915
MaeII ACGT 2 cut(s) 381, 690
MaeIII GTNAC 1 cut(s) 755
MalI GATC 5 cut(s) 40, 297, 353, 662, 1050
MboI GATC 5 cut(s) 38, 295, 351, 660, 1048
MboII GAAGA 5 cut(s) 22, 497, 661, 806, 854
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 2 cut(s) 38, 295
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 7 cut(s) 212, 251, 371, 387, 680, 696, 1093
MluNI TGGCCA 1 cut(s) 113
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 5 cut(s) 177, 185, 237, 1074, 1096
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 4 cut(s) 129, 189, 299, 323
MspR9I CCNGG 2 cut(s) 129, 954
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 954
MvnI CGCG 2 cut(s) 378, 687
MwoI GCNNNNNNNGC 2 cut(s) 375, 684
NciI CCSGG 1 cut(s) 129
NdeII GATC 5 cut(s) 38, 295, 351, 660, 1048
NlaIII CATG 8 cut(s) 63, 403, 424, 460, 712, 733, 769, 911
NlaIV GGNNCC 4 cut(s) 297, 742, 901, 970
NmuCI GTSAC 1 cut(s) 755
NruI TCGCGA 2 cut(s) 378, 687
NspI RCATGY 2 cut(s) 424, 733
PagI TCATGA 2 cut(s) 456, 765
PciI ACATGT 2 cut(s) 420, 729
PfeI GAWTC 6 cut(s) 230, 460, 500, 769, 809, 1069
PflMI CCANNNNNTGG 1 cut(s) 978
PkrI GCNGC 1 cut(s) 100
PscI ACATGT 2 cut(s) 420, 729
Psp6I CCWGG 1 cut(s) 952
PspGI CCWGG 1 cut(s) 952
PspN4I GGNNCC 4 cut(s) 297, 742, 901, 970
PspPI GGNCC 2 cut(s) 126, 638
PstNI CAGNNNCTG 3 cut(s) 602, 965, 1066
PsuI RGATCY 2 cut(s) 38, 295
RruI TCGCGA 2 cut(s) 378, 687
RsaI GTAC 5 cut(s) 133, 742, 874, 901, 970
RsaNI GTAC 5 cut(s) 132, 741, 873, 900, 969
SaqAI TTAA 5 cut(s) 177, 185, 237, 1074, 1096
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 5 cut(s) 38, 295, 351, 660, 1048
Sau96I GGNCC 2 cut(s) 126, 638
ScrFI CCNGG 2 cut(s) 129, 954
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 474, 783
SmlI CTYRAG 2 cut(s) 1008, 1052
SmoI CTYRAG 2 cut(s) 1008, 1052
SpeI ACTAGT 1 cut(s) 914
Sse9I AATT 7 cut(s) 212, 251, 371, 387, 680, 696, 1093
SspI AATATT 2 cut(s) 514, 823
SspMI CTAG 4 cut(s) 303, 443, 752, 915
StyD4I CCNGG 2 cut(s) 127, 952
StyI CCWWGG 2 cut(s) 442, 751
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 2 cut(s) 384, 693
TaqI TCGA 2 cut(s) 315, 861
TasI AATT 7 cut(s) 212, 251, 371, 387, 680, 696, 1093
TatI WGTACW 1 cut(s) 872
TfiI GAWTC 6 cut(s) 230, 460, 500, 769, 809, 1069
Tru1I TTAA 5 cut(s) 177, 185, 237, 1074, 1096
Tru9I TTAA 5 cut(s) 177, 185, 237, 1074, 1096
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 3 cut(s) 570, 855, 947
TspGWI ACGGA 1 cut(s) 1007
Van91I CCANNNNNTGG 1 cut(s) 978
XapI RAATTY 2 cut(s) 371, 680
XceI RCATGY 2 cut(s) 424, 733
XmaJI CCTAGG 2 cut(s) 442, 751
XspI CTAG 4 cut(s) 303, 443, 752, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.