RchiOBHm_Chr3g0459461
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000240
Physical Location & Seq
Forward (+)
7879460 .. 7882086
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42605

Sequence Viewer

Length: 162 bp
ATGGCAAAAGAATCAGCCGTTTGGAATGAGGGTTTAGTAGATCTTTTTTGTGAACTAGCTATGAAGGAGGTGGATAATGATAATCGTCCACACACTCATTTTAATCCGGAGGGATGGGCGAATATAATCAATTTTAAAGGACATGCAAGGTTTTTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

53

Amino Acids

6.16

Weight (kDa)

5.4

Isoelectric Point (pI)

15.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Aor13HI TCCGGA 1 cut(s) 106
BccI CCATC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 2
BfaI CTAG 1 cut(s) 56
BglII AGATCT 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 106
BseGI GGATG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 106
BssMI GATC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstNSI RCATGY 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BtsCI GGATG 1 cut(s) 119
CviAII CATG 1 cut(s) 143
CviJI RGCY 2 cut(s) 17, 59
CviKI_1 RGCY 2 cut(s) 17, 59
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DraI TTTAAA 1 cut(s) 136
FaeI CATG 1 cut(s) 146
FaiI YATR 3 cut(s) 62, 125, 144
FatI CATG 1 cut(s) 142
FokI GGATG 1 cut(s) 126
FspBI CTAG 1 cut(s) 56
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 146
HinfI GANTC 1 cut(s) 11
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 2 cut(s) 53, 89
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 2 cut(s) 53, 89
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 146
Hsp92II CATG 1 cut(s) 146
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 1 cut(s) 120
MaeI CTAG 1 cut(s) 56
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MflI RGATCY 1 cut(s) 40
MluCI AATT 1 cut(s) 130
MnlI CCTC 3 cut(s) 22, 61, 103
MroI TCCGGA 1 cut(s) 106
MseI TTAA 2 cut(s) 102, 135
MspI CCGG 1 cut(s) 107
NdeII GATC 1 cut(s) 40
NlaIII CATG 1 cut(s) 146
NspI RCATGY 1 cut(s) 146
PfeI GAWTC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 40
SaqAI TTAA 2 cut(s) 102, 135
Sau3AI GATC 1 cut(s) 40
SetI ASST 3 cut(s) 61, 72, 152
SgeI CNNG 3 cut(s) 68, 119, 155
Sse9I AATT 1 cut(s) 130
SspMI CTAG 1 cut(s) 56
TasI AATT 1 cut(s) 130
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 102, 135
Tru9I TTAA 2 cut(s) 102, 135
TspDTI ATGAA 2 cut(s) 77, 145
XceI RCATGY 1 cut(s) 146
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.