Rmu_sc0015928.1_g000001
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015928.1
OG0000240
Physical Location & Seq
Reverse (-)
448 .. 1002
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015928.1_g000001.1.cds

Sequence Viewer

Length: 555 bp
atgatggctgtttatgataacatgtttaggggtagcacagccctaggtcactctgtcatgattccctcagctactatagatattgaagaggtggtggaggattctgagcatgatgacatttctggagatgttgaggagatggaccaacaaggtgaaccaagagggaaaaagagaaaaactgtggagtgccaaactgggcgtaataaagaaaaaaaagataaaggagttctaggagggccaaaggggaagaaagaaaaggtgggaggtgcagctcaattgtctaaacaaattgatcgtcttgttgaagtagtcgagagtaggagtacagctacatctgtccgtaatactagtacagatcaaggaactagtattcaggaggtgatgcgagttgttgcaactttaccaggagcagaaactggtaccaagctatggtggtttgcaacagagttgttctgctctcaagagaagcgagagatgttttctattatgacagatgatgatctcaagctccagtttctgattcttaatcagaaaaaaaaactaaaaattaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

184

Amino Acids

20.51

Weight (kDa)

6.2

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 429
AfaI GTAC 3 cut(s) 325, 352, 421
AfiI CCNNNNNNNGG 1 cut(s) 429
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 2 cut(s) 86, 305
AhlI ACTAGT 2 cut(s) 347, 365
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 5 cut(s) 71, 272, 329, 427, 508
AluI AGCT 5 cut(s) 71, 272, 329, 427, 508
AlwNI CAGNNNCTG 2 cut(s) 416, 517
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
Asp718I GGTACC 1 cut(s) 419
AspA2I CCTAGG 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 142, 236
AsuHPI GGTGA 2 cut(s) 164, 391
AvaII GGWCC 1 cut(s) 142
AvrII CCTAGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 419
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 281
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 405
BcuI ACTAGT 2 cut(s) 347, 365
BfaI CTAG 4 cut(s) 44, 230, 348, 366
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 270
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 142, 236
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 405
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 204
BpmI CTGGAG 2 cut(s) 144, 494
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 444, 488
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 429
Bse1I ACTGG 3 cut(s) 199, 421, 511
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 43
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 81, 96
BseNI ACTGG 3 cut(s) 199, 421, 511
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 281
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 429
BsnI GGCC 1 cut(s) 238
Bsp143I GATC 3 cut(s) 292, 355, 499
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 2 cut(s) 80, 97
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 421
BspT107I GGYRCC 1 cut(s) 419
BsrI ACTGG 3 cut(s) 199, 421, 511
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 3 cut(s) 292, 355, 499
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 67, 105
BstKTI GATC 3 cut(s) 295, 358, 502
BstMBI GATC 3 cut(s) 292, 355, 499
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 238
CaiI CAGNNNCTG 2 cut(s) 416, 517
CciI TCATGA 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 142, 236
Csp6I GTAC 3 cut(s) 324, 351, 420
CviAII CATG 3 cut(s) 22, 58, 110
CviJI RGCY 8 cut(s) 8, 41, 71, 238, 272, 329, 427, 508
CviKI_1 RGCY 8 cut(s) 8, 41, 71, 238, 272, 329, 427, 508
CviQI GTAC 3 cut(s) 324, 351, 420
DdeI CTNAG 2 cut(s) 67, 105
DpnI GATC 3 cut(s) 294, 357, 501
DpnII GATC 3 cut(s) 292, 355, 499
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 3 cut(s) 25, 61, 113
FaiI YATR 7 cut(s) 15, 23, 59, 77, 111, 430, 488
FatI CATG 3 cut(s) 21, 57, 109
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 4 cut(s) 44, 230, 348, 366
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 2 cut(s) 144, 494
HaeIII GGCC 1 cut(s) 238
Hin1II CATG 3 cut(s) 25, 61, 113
HinfI GANTC 3 cut(s) 61, 101, 520
HphI GGTGA 2 cut(s) 164, 391
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 3 cut(s) 106, 519, 531
Hpy188III TCNNGA 5 cut(s) 58, 123, 313, 374, 461
Hpy8I GTNNAC 1 cut(s) 155
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 269, 395, 440
HpyF3I CTNAG 2 cut(s) 67, 105
Hsp92II CATG 3 cut(s) 25, 61, 113
KpnI GGTACC 1 cut(s) 423
Kzo9I GATC 3 cut(s) 292, 355, 499
LmnI GCTCC 2 cut(s) 407, 513
LpnPI CCDG 7 cut(s) 108, 180, 359, 390, 402, 417, 524
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 372
MaeI CTAG 4 cut(s) 44, 230, 348, 366
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 294, 357, 501
MboI GATC 3 cut(s) 292, 355, 499
MboII GAAGA 2 cut(s) 98, 259
MfeI CAATTG 1 cut(s) 275
MluCI AATT 3 cut(s) 275, 288, 546
MnlI CCTC 8 cut(s) 76, 82, 91, 127, 155, 227, 257, 370
MseI TTAA 2 cut(s) 525, 549
MspR9I CCNGG 1 cut(s) 405
MunI CAATTG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 405
NdeII GATC 3 cut(s) 292, 355, 499
NlaIII CATG 3 cut(s) 25, 61, 113
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 47
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 57
PciI ACATGT 1 cut(s) 21
PfeI GAWTC 3 cut(s) 61, 101, 520
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 1 cut(s) 271
PscI ACATGT 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 2 cut(s) 142, 236
PstNI CAGNNNCTG 2 cut(s) 416, 517
RsaI GTAC 3 cut(s) 325, 352, 421
RsaNI GTAC 3 cut(s) 324, 351, 420
SaqAI TTAA 2 cut(s) 525, 549
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 292, 355, 499
Sau96I GGNCC 2 cut(s) 142, 236
ScrFI CCNGG 1 cut(s) 405
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 459, 503
SmoI CTYRAG 2 cut(s) 459, 503
SpeI ACTAGT 2 cut(s) 347, 365
Sse9I AATT 3 cut(s) 275, 288, 546
SspMI CTAG 4 cut(s) 44, 230, 348, 366
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 312
TasI AATT 3 cut(s) 275, 288, 546
TatI WGTACW 2 cut(s) 323, 350
TfiI GAWTC 3 cut(s) 61, 101, 520
Tru1I TTAA 2 cut(s) 525, 549
Tru9I TTAA 2 cut(s) 525, 549
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 329
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 142
XceI RCATGY 1 cut(s) 25
XmaJI CCTAGG 1 cut(s) 43
XspI CTAG 4 cut(s) 44, 230, 348, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.