Rw6G025470
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000240
Physical Location & Seq
Forward (+)
48819834 .. 48820915
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025470.1

Sequence Viewer

Length: 852 bp
ATGGGAGTGAAGAAGATTACTAGTGATAATAGCACAGAGACGATCAATCTTGAAAATGGGCAAACTGGAACTAAATCTGAAGTTGGAAAAGGACAGAGGCCTGGTACTCACTTTAATAAAGAAGGATGGGCTAGTTTGGTTGCAAACTTTCATGCAGAGACTGGAAATAATTATGACAAATCACAATTGAAGAACAAGTGCTATTTACTGAAAAAAGAATGGAAAATATGGAAAGATCTAATCGGAAAGGATACTAGCCTTGGTTGGAATCCCACTAAAAATATTATAAATCCGCAATATATAAAATTGCGTGTTCGAGGCATCAATCCTGAGATGGAGGCAAAGTTAGATATGATGTTCAATGGTGTTGTAGCTACCGGTAAATATGCTTGGGCACCTTCATCTGATCTACCACCACCTCAAAACGGCCAAGCTCCAATGGATGAAGTTATTGCGTTGGAAGATAATCTTGATTCTGAGGAGTTTGACACTAATGAAAGTCCACAGTTAGCTCAAGTTACCAAAGAGATAGGAAAGAAGCGAGCAAATTGTCAACTTGACACGAAAGAATTGAAATGGAAAAGAGGCAAAATGGGAGGTGCTGCAAAACTGTCCCAACAAATTAATCGTCTTGTTGAGGTAGTTGAGTCTAGGAGTACCTCATCATCAACATTGATAAAAGGCTCACAATCTACTAGTTTGTCAGGGATAGAGATTGGTAGCCAACTGTGGTGGTTTGCAACTGAGTTATTTTTCTCCCAAGAGAAGAGGGAAATGTTTTCTGTGATGAAAGATCCGGAGATGAAGCTTCAATTTATCCTTCGTAATCAAGACAGGGAAAATAATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

283

Amino Acids

31.94

Weight (kDa)

8.84

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 27 - 96 3e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 394
AccIII TCCGGA 1 cut(s) 796
AciI CCGC 1 cut(s) 293
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 106, 658
AfiI CCNNNNNNNGG 1 cut(s) 425
AgeI ACCGGT 1 cut(s) 377
AgsI TTSAA 5 cut(s) 53, 190, 361, 574, 812
AhlI ACTAGT 2 cut(s) 20, 695
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 4 cut(s) 374, 434, 512, 808
AluI AGCT 4 cut(s) 374, 434, 512, 808
Alw26I GTCTC 2 cut(s) 32, 152
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 796
AoxI GGCC 2 cut(s) 98, 427
ApeKI GCWGC 1 cut(s) 602
ArsI GACNNNNNNTTYG 2 cut(s) 613, 645
AseI ATTAAT 1 cut(s) 624
AsiGI ACCGGT 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 589
BccI CCATC 2 cut(s) 120, 328
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 1 cut(s) 102
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 32, 152
BcuI ACTAGT 2 cut(s) 20, 695
BfaI CTAG 5 cut(s) 21, 132, 255, 651, 696
BfuI GTATCC 1 cut(s) 244
BglII AGATCT 1 cut(s) 235
BisI GCNGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 604
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 259
BsaWI WCCGGW 2 cut(s) 377, 796
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 70, 166
BseAI TCCGGA 1 cut(s) 796
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 131, 448
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 3 cut(s) 321, 468, 735
BseNI ACTGG 2 cut(s) 70, 166
BseRI GAGGAG 1 cut(s) 494
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 1 cut(s) 589
BshFI GGCC 2 cut(s) 100, 429
BshNI GGYRCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 377
BsiSI CCGG 2 cut(s) 378, 797
BslFI GGGAC 1 cut(s) 598
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 32, 152
BsmBI CGTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 598
BsnI GGCC 2 cut(s) 100, 429
Bsp1286I GDGCHC 1 cut(s) 397
Bsp13I TCCGGA 1 cut(s) 796
Bsp143I GATC 4 cut(s) 42, 235, 406, 793
BspACI CCGC 1 cut(s) 293
BspANI GGCC 2 cut(s) 100, 429
BspCNI CTCAG 3 cut(s) 322, 469, 736
BspEI TCCGGA 1 cut(s) 796
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 2 cut(s) 70, 166
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 4 cut(s) 42, 235, 406, 793
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 3 cut(s) 507, 612, 729
Bst6I CTCTTC 1 cut(s) 761
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 3 cut(s) 330, 477, 744
BstF5I GGATG 2 cut(s) 131, 448
BstKTI GATC 4 cut(s) 45, 238, 409, 796
BstMAI GTCTC 2 cut(s) 32, 152
BstMBI GATC 4 cut(s) 42, 235, 406, 793
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 589
BstX2I RGATCY 2 cut(s) 235, 793
BstYI RGATCY 2 cut(s) 235, 793
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 2 cut(s) 100, 429
BtsCI GGATG 2 cut(s) 131, 448
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 377
Csp6I GTAC 2 cut(s) 105, 657
CspAI ACCGGT 1 cut(s) 377
CspCI CAANNNNNGTGG 2 cut(s) 713, 748
CviAII CATG 1 cut(s) 152
CviQI GTAC 2 cut(s) 105, 657
DdeI CTNAG 3 cut(s) 330, 477, 744
DpnI GATC 4 cut(s) 44, 237, 408, 795
DpnII GATC 4 cut(s) 42, 235, 406, 793
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 761
EarI CTCTTC 1 cut(s) 761
Eco130I CCWWGG 1 cut(s) 259
Eco147I AGGCCT 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 155
FaiI YATR 8 cut(s) 153, 174, 229, 287, 300, 302, 353, 387
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 598
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 2 cut(s) 138, 455
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 5 cut(s) 21, 132, 255, 651, 696
GluI GCNGC 1 cut(s) 603
HaeIII GGCC 2 cut(s) 100, 429
HapII CCGG 2 cut(s) 378, 797
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 554
HindII GTYRAC 1 cut(s) 554
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 3 cut(s) 268, 473, 647
HpaII CCGG 2 cut(s) 378, 797
Hpy166II GTNNAC 2 cut(s) 503, 554
Hpy188I TCNGA 4 cut(s) 79, 245, 406, 478
Hpy188III TCNNGA 5 cut(s) 50, 329, 470, 797, 830
Hpy8I GTNNAC 2 cut(s) 503, 554
HpyAV CCTTC 3 cut(s) 116, 408, 830
HpyCH4III ACNGT 3 cut(s) 507, 612, 729
HpyCH4V TGCA 4 cut(s) 143, 155, 605, 740
HpyF3I CTNAG 3 cut(s) 330, 477, 744
Hsp92II CATG 1 cut(s) 155
Kpn2I TCCGGA 1 cut(s) 796
Kzo9I GATC 4 cut(s) 42, 235, 406, 793
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 9 cut(s) 51, 87, 114, 147, 342, 391, 690, 810, 820
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 1 cut(s) 330
MaeI CTAG 5 cut(s) 21, 132, 255, 651, 696
MaeIII GTNAC 1 cut(s) 517
MalI GATC 4 cut(s) 44, 237, 408, 795
MboI GATC 4 cut(s) 42, 235, 406, 793
MboII GAAGA 5 cut(s) 22, 25, 202, 473, 778
MfeI CAATTG 1 cut(s) 185
MflI RGATCY 2 cut(s) 235, 793
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 7 cut(s) 169, 185, 305, 547, 569, 621, 812
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 3 cut(s) 64, 245, 438
MroI TCCGGA 1 cut(s) 796
MseI TTAA 2 cut(s) 114, 624
MspI CCGG 2 cut(s) 378, 797
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 102
NdeII GATC 4 cut(s) 42, 235, 406, 793
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 396
PceI AGGCCT 1 cut(s) 100
PfeI GAWTC 2 cut(s) 268, 473
PinAI ACCGGT 1 cut(s) 377
PkrI GCNGC 1 cut(s) 604
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PshBI ATTAAT 1 cut(s) 624
PsiI TTATAA 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 2 cut(s) 235, 793
RsaI GTAC 2 cut(s) 106, 658
RsaNI GTAC 2 cut(s) 105, 657
SaqAI TTAA 2 cut(s) 114, 624
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 4 cut(s) 42, 235, 406, 793
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 397
SetI ASST 9 cut(s) 376, 400, 421, 436, 514, 601, 642, 662, 810
SfaNI GCATC 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
SpeI ACTAGT 2 cut(s) 20, 695
Sse9I AATT 7 cut(s) 169, 185, 305, 547, 569, 621, 812
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 1 cut(s) 293
SspI AATATT 1 cut(s) 283
SspMI CTAG 5 cut(s) 21, 132, 255, 651, 696
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 3 cut(s) 507, 612, 729
TaqI TCGA 1 cut(s) 316
TasI AATT 7 cut(s) 169, 185, 305, 547, 569, 621, 812
TfiI GAWTC 2 cut(s) 268, 473
Tru1I TTAA 2 cut(s) 114, 624
Tru9I TTAA 2 cut(s) 114, 624
TseI GCWGC 1 cut(s) 602
TspDTI ATGAA 6 cut(s) 140, 390, 459, 510, 803, 818
VspI ATTAAT 1 cut(s) 624
XspI CTAG 5 cut(s) 21, 132, 255, 651, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.