Rorug06G0064100
MYB Family

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
8555714 .. 8558791
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0064100.1

Sequence Viewer

Length: 1032 bp
ATGTGCGACGAAGGAAACAGCGTCTACACCACGCGCTCGACGAAGAAGCGAGCCTCGGCGGCGGAGGCCCTGAAGGCTCAGGCGTCCAAGAAGCAGCGATCCGTATTGGGAGAGATCACCAACTCGCCGGATCTCGTTTCGGTTCCGAAATCGGCACCGAAGAAACCGAAAATTGAGTCGCCGGAGGAGAAGAAGGAAGAAGAAGAGGAGGGACTCAAGACGGAGATTGATGTGAGCTCGATTGATCCGGTCAAATGTGCTTACTCGCCTTCTATGTATAAGCATCTTCATAAATTGGAGGTGGAGGGGAAGAATAGACCTTTATGTGGTTACATGGAGAAGGTGCAGAATTGTATTTCAGAACACATGCGAGAAGTCCTGGTGGATTGGTTGGTGGAGGTTGCGGAGGAATACAAGTTTGTTTCAGACACCCTTTATCTTACCGTATCATATATCGACAGATACCTTTCTTCACACGTTATCAGCAAGAACAAGCTACAGCTTCTTGGTGTTGCGTGCATGTTTATTGCCTCGAAGTACGAAGAGATTTGTCCTCCACGTATTGAAGAGTTCTGCTATATAACAGATAATTCCTACATGATAGAAGAGGTGTTGGAAATGGAGAAAGGTGTACTCAAATTCTTGAACTTTGAGATCTATAGTCCCACAACAAAGAATTTTCTCAGAATCTTTGCAAGAGCTGCTCAAGAGAATTCCAAATCTTCGGATCTGCAGTTTGAATTCTTGGGTGGTTATCTTGCGGAACTAAGTTTGCTTGACTACTGCTGTGTTCGATTCCTACCATCAGTTATTGCTGCATCAGCGGTTTTTCTTACAAGGTTCACAATCCAGCCTGAGGTTCATCCCTGGAGCTGGGACTTGCAATGCTATTCTGGTTATAAACCATCTGACTTACAAGATTGTGTCCTCGCCCTTCATGACTTGCAGCTGAATAAAAGAGGAAACAATTTGCGAGCAGTTAGAGATAAATATATGCAAGCAAAGAAGGAAAAGCAGCAAGATTCTGAATGA

Protein Analysis

343

Amino Acids

39.29

Weight (kDa)

5.72

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 92 - 219 2.3e-45 Cyclin, N-terminal domain
Cyclin_C PF02984 222 - 338 6.1e-31 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AccB1I GGYRCC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 34
AciI CCGC 5 cut(s) 59, 62, 404, 761, 824
AclWI GGATC 4 cut(s) 93, 138, 239, 735
AcsI RAATTY 4 cut(s) 638, 676, 712, 740
AcuI CTGAAG 1 cut(s) 92
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 2 cut(s) 539, 633
AfiI CCNNNNNNNGG 3 cut(s) 326, 856, 873
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 3 cut(s) 566, 646, 740
AjnI CCWGG 2 cut(s) 378, 866
AluBI AGCT 6 cut(s) 237, 496, 502, 701, 873, 949
AluI AGCT 6 cut(s) 237, 496, 502, 701, 873, 949
Alw21I GWGCWC 1 cut(s) 239
AlwI GGATC 4 cut(s) 93, 138, 239, 735
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 5 cut(s) 94, 701, 815, 946, 1015
ApoI RAATTY 4 cut(s) 638, 676, 712, 740
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 855
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 5 cut(s) 106, 688, 802, 958, 1027
BccI CCATC 2 cut(s) 811, 913
BciT130I CCWGG 2 cut(s) 380, 868
BfmI CTRYAG 3 cut(s) 497, 658, 731
BglI GCCNNNNNGGC 2 cut(s) 59, 74
BglII AGATCT 1 cut(s) 654
BisI GCNGC 6 cut(s) 60, 95, 702, 816, 947, 1016
BlsI GCNGC 6 cut(s) 61, 96, 703, 817, 948, 1017
Bme1390I CCNGG 2 cut(s) 380, 868
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 2 cut(s) 144, 156
BmrFI CCNGG 2 cut(s) 380, 868
BmsI GCATC 2 cut(s) 292, 827
BpmI CTGGAG 1 cut(s) 889
Bpu10I CCTNAGC 1 cut(s) 78
BpuEI CTTGAG 2 cut(s) 200, 690
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 54, 866
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 856, 873
Bse21I CCTNAGG 1 cut(s) 855
Bse3DI GCAATG 1 cut(s) 890
BseBI CCWGG 2 cut(s) 380, 868
BseDI CCNNGG 2 cut(s) 54, 866
BseGI GGATG 1 cut(s) 862
BseLI CCNNNNNNNGG 3 cut(s) 326, 856, 873
BseMI GCAATG 1 cut(s) 890
BseMII CTCAG 3 cut(s) 92, 697, 846
BseRI GAGGAG 2 cut(s) 200, 221
BseXI GCAGC 5 cut(s) 106, 688, 802, 958, 1027
BseYI CCCAGC 1 cut(s) 873
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 3 cut(s) 128, 182, 248
BslFI GGGAC 3 cut(s) 225, 648, 890
BslI CCNNNNNNNGG 3 cut(s) 326, 856, 873
BsmFI GGGAC 3 cut(s) 225, 648, 890
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 239
Bsp143I GATC 6 cut(s) 98, 114, 130, 244, 654, 727
BspACI CCGC 5 cut(s) 59, 62, 404, 761, 824
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 3 cut(s) 91, 696, 847
BspFNI CGCG 1 cut(s) 34
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 2 cut(s) 144, 156
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 4 cut(s) 93, 138, 239, 735
BspT107I GGYRCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 890
BssECI CCNNGG 2 cut(s) 54, 866
BssMI GATC 6 cut(s) 98, 114, 130, 244, 654, 727
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 380, 868
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 4 cut(s) 198, 537, 561, 600
BstACI GRCGYC 1 cut(s) 83
BstAPI GCANNNNNTGC 1 cut(s) 701
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 4 cut(s) 51, 517, 975, 999
BstDEI CTNAG 4 cut(s) 78, 683, 767, 855
BstF5I GGATG 1 cut(s) 862
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 6 cut(s) 101, 117, 133, 247, 657, 730
BstMBI GATC 6 cut(s) 98, 114, 130, 244, 654, 727
BstMWI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 701, 821
BstNI CCWGG 2 cut(s) 380, 868
BstNSI RCATGY 2 cut(s) 370, 523
BstSCI CCNGG 2 cut(s) 378, 866
BstSFI CTRYAG 3 cut(s) 497, 658, 731
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 5 cut(s) 106, 688, 802, 958, 1027
BstX2I RGATCY 3 cut(s) 130, 654, 727
BstYI RGATCY 3 cut(s) 130, 654, 727
Bsu36I CCTNAGG 1 cut(s) 855
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 862
Cac8I GCNNGC 4 cut(s) 51, 517, 975, 999
CciI TCATGA 1 cut(s) 937
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 2 cut(s) 10, 72
Csp6I GTAC 2 cut(s) 538, 632
CviAII CATG 5 cut(s) 334, 367, 520, 598, 938
CviQI GTAC 2 cut(s) 538, 632
DdeI CTNAG 4 cut(s) 78, 683, 767, 855
DpnI GATC 6 cut(s) 100, 116, 132, 246, 656, 729
DpnII GATC 6 cut(s) 98, 114, 130, 244, 654, 727
Eam1104I CTCTTC 4 cut(s) 198, 537, 561, 600
EarI CTCTTC 4 cut(s) 198, 537, 561, 600
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 92
Eco81I CCTNAGG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 2 cut(s) 712, 740
EcoRII CCWGG 2 cut(s) 378, 866
EcoT38I GRGCYC 1 cut(s) 239
FaeI CATG 5 cut(s) 337, 370, 523, 601, 941
FaqI GGGAC 3 cut(s) 225, 648, 890
FatI CATG 5 cut(s) 333, 366, 519, 597, 937
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 6 cut(s) 60, 95, 702, 816, 947, 1016
FokI GGATG 1 cut(s) 849
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 6 cut(s) 60, 95, 702, 816, 947, 1016
GlaI GCGC 1 cut(s) 35
GluI GCNGC 6 cut(s) 60, 95, 702, 816, 947, 1016
GsaI CCCAGC 1 cut(s) 877
GsuI CTGGAG 1 cut(s) 889
HaeIII GGCC 1 cut(s) 68
HapII CCGG 3 cut(s) 128, 182, 248
HgaI GACGC 2 cut(s) 10, 72
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 5 cut(s) 337, 370, 523, 601, 941
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 5 cut(s) 176, 213, 687, 795, 1022
HpaII CCGG 3 cut(s) 128, 182, 248
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 25, 632, 843
Hpy188I TCNGA 7 cut(s) 147, 361, 427, 686, 727, 910, 1027
Hpy188III TCNNGA 4 cut(s) 217, 643, 707, 938
Hpy8I GTNNAC 3 cut(s) 25, 632, 843
Hpy99I CGWCG 2 cut(s) 11, 43
HpyAV CCTTC 7 cut(s) 5, 67, 187, 279, 334, 944, 1000
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 2 cut(s) 477, 559
HpyCH4V TGCA 8 cut(s) 346, 519, 695, 733, 818, 883, 946, 997
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 701, 821
HpyF3I CTNAG 4 cut(s) 78, 683, 767, 855
HpySE526I ACGT 2 cut(s) 477, 559
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 5 cut(s) 337, 370, 523, 601, 941
HspAI GCGC 1 cut(s) 34
Kzo9I GATC 6 cut(s) 98, 114, 130, 244, 654, 727
LmnI GCTCC 1 cut(s) 870
Lsp1109I GCAGC 5 cut(s) 106, 688, 802, 958, 1027
LweI GCATC 2 cut(s) 292, 827
MaeII ACGT 2 cut(s) 477, 559
MaeIII GTNAC 1 cut(s) 329
MalI GATC 6 cut(s) 100, 116, 132, 246, 656, 729
MboI GATC 6 cut(s) 98, 114, 130, 244, 654, 727
MflI RGATCY 3 cut(s) 130, 654, 727
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 9 cut(s) 171, 293, 349, 589, 638, 676, 712, 740, 967
MlyI GAGTC 2 cut(s) 185, 207
MmeI TCCRAC 1 cut(s) 594
MspA1I CMGCKG 2 cut(s) 824, 949
MspI CCGG 3 cut(s) 128, 182, 248
MspR9I CCNGG 2 cut(s) 380, 868
MvaI CCWGG 2 cut(s) 380, 868
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 59, 65, 74, 701, 821
NdeII GATC 6 cut(s) 98, 114, 130, 244, 654, 727
NlaIII CATG 5 cut(s) 337, 370, 523, 601, 941
NlaIV GGNNCC 2 cut(s) 144, 156
NmeAIII GCCGAG 1 cut(s) 35
NspI RCATGY 2 cut(s) 370, 523
PagI TCATGA 1 cut(s) 937
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PfeI GAWTC 3 cut(s) 687, 795, 1022
PkrI GCNGC 6 cut(s) 61, 96, 703, 817, 948, 1017
PleI GAGTC 2 cut(s) 184, 207
PpsI GAGTC 2 cut(s) 184, 207
Ppu21I YACGTR 1 cut(s) 560
PsiI TTATAA 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 239
Psp6I CCWGG 2 cut(s) 378, 866
PspFI CCCAGC 1 cut(s) 873
PspGI CCWGG 2 cut(s) 378, 866
PspN4I GGNNCC 2 cut(s) 144, 156
PspPI GGNCC 1 cut(s) 67
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 3 cut(s) 130, 654, 727
PvuII CAGCTG 1 cut(s) 949
RsaI GTAC 2 cut(s) 539, 633
RsaNI GTAC 2 cut(s) 538, 632
SacI GAGCTC 1 cut(s) 239
SatI GCNGC 6 cut(s) 60, 95, 702, 816, 947, 1016
Sau3AI GATC 6 cut(s) 98, 114, 130, 244, 654, 727
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 2 cut(s) 185, 207
ScrFI CCNGG 2 cut(s) 380, 868
SduI GDGCHC 1 cut(s) 239
SfaNI GCATC 2 cut(s) 292, 827
SfcI CTRYAG 3 cut(s) 497, 658, 731
SmlI CTYRAG 2 cut(s) 215, 705
SmoI CTYRAG 2 cut(s) 215, 705
Sse9I AATT 9 cut(s) 171, 293, 349, 589, 638, 676, 712, 740, 967
SsiI CCGC 5 cut(s) 59, 62, 404, 761, 824
SstI GAGCTC 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 378, 866
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 2 cut(s) 480, 562
TaqI TCGA 5 cut(s) 38, 239, 456, 533, 793
TasI AATT 9 cut(s) 171, 293, 349, 589, 638, 676, 712, 740, 967
TatI WGTACW 1 cut(s) 631
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 3 cut(s) 687, 795, 1022
TseI GCWGC 5 cut(s) 94, 701, 815, 946, 1015
TspDTI ATGAA 3 cut(s) 278, 851, 926
TspGWI ACGGA 2 cut(s) 91, 236
XapI RAATTY 4 cut(s) 638, 676, 712, 740
XceI RCATGY 2 cut(s) 370, 523
XmiI GTMKAC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.