Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 900 |
| AccB1I | GGYRCC | 1 cut(s) | 154 |
| AccI | GTMKAC | 1 cut(s) | 24 |
| AccII | CGCG | 1 cut(s) | 34 |
| AciI | CCGC | 5 cut(s) | 59, 62, 404, 761, 824 |
| AclWI | GGATC | 4 cut(s) | 93, 138, 239, 735 |
| AcsI | RAATTY | 4 cut(s) | 638, 676, 712, 740 |
| AcuI | CTGAAG | 1 cut(s) | 92 |
| AcyI | GRCGYC | 1 cut(s) | 83 |
| AfaI | GTAC | 2 cut(s) | 539, 633 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 326, 856, 873 |
| AflIII | ACRYGT | 1 cut(s) | 475 |
| AgsI | TTSAA | 3 cut(s) | 566, 646, 740 |
| AjnI | CCWGG | 2 cut(s) | 378, 866 |
| AluBI | AGCT | 6 cut(s) | 237, 496, 502, 701, 873, 949 |
| AluI | AGCT | 6 cut(s) | 237, 496, 502, 701, 873, 949 |
| Alw21I | GWGCWC | 1 cut(s) | 239 |
| AlwI | GGATC | 4 cut(s) | 93, 138, 239, 735 |
| AoxI | GGCC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 5 cut(s) | 94, 701, 815, 946, 1015 |
| ApoI | RAATTY | 4 cut(s) | 638, 676, 712, 740 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 161, 193 |
| AspLEI | GCGC | 1 cut(s) | 36 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| AxyI | CCTNAGG | 1 cut(s) | 855 |
| BanI | GGYRCC | 1 cut(s) | 154 |
| BanII | GRGCYC | 1 cut(s) | 239 |
| Bbv12I | GWGCWC | 1 cut(s) | 239 |
| BbvI | GCAGC | 5 cut(s) | 106, 688, 802, 958, 1027 |
| BccI | CCATC | 2 cut(s) | 811, 913 |
| BciT130I | CCWGG | 2 cut(s) | 380, 868 |
| BfmI | CTRYAG | 3 cut(s) | 497, 658, 731 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 59, 74 |
| BglII | AGATCT | 1 cut(s) | 654 |
| BisI | GCNGC | 6 cut(s) | 60, 95, 702, 816, 947, 1016 |
| BlsI | GCNGC | 6 cut(s) | 61, 96, 703, 817, 948, 1017 |
| Bme1390I | CCNGG | 2 cut(s) | 380, 868 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 2 cut(s) | 144, 156 |
| BmrFI | CCNGG | 2 cut(s) | 380, 868 |
| BmsI | GCATC | 2 cut(s) | 292, 827 |
| BpmI | CTGGAG | 1 cut(s) | 889 |
| Bpu10I | CCTNAGC | 1 cut(s) | 78 |
| BpuEI | CTTGAG | 2 cut(s) | 200, 690 |
| BsaAI | YACGTR | 1 cut(s) | 560 |
| BsaHI | GRCGYC | 1 cut(s) | 83 |
| BsaJI | CCNNGG | 2 cut(s) | 54, 866 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 326, 856, 873 |
| Bse21I | CCTNAGG | 1 cut(s) | 855 |
| Bse3DI | GCAATG | 1 cut(s) | 890 |
| BseBI | CCWGG | 2 cut(s) | 380, 868 |
| BseDI | CCNNGG | 2 cut(s) | 54, 866 |
| BseGI | GGATG | 1 cut(s) | 862 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 326, 856, 873 |
| BseMI | GCAATG | 1 cut(s) | 890 |
| BseMII | CTCAG | 3 cut(s) | 92, 697, 846 |
| BseRI | GAGGAG | 2 cut(s) | 200, 221 |
| BseXI | GCAGC | 5 cut(s) | 106, 688, 802, 958, 1027 |
| BseYI | CCCAGC | 1 cut(s) | 873 |
| BsgI | GTGCAG | 1 cut(s) | 365 |
| Bsh1236I | CGCG | 1 cut(s) | 34 |
| BshFI | GGCC | 1 cut(s) | 68 |
| BshNI | GGYRCC | 1 cut(s) | 154 |
| BsiHKAI | GWGCWC | 1 cut(s) | 239 |
| BsiSI | CCGG | 3 cut(s) | 128, 182, 248 |
| BslFI | GGGAC | 3 cut(s) | 225, 648, 890 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 326, 856, 873 |
| BsmFI | GGGAC | 3 cut(s) | 225, 648, 890 |
| BsnI | GGCC | 1 cut(s) | 68 |
| Bsp1286I | GDGCHC | 1 cut(s) | 239 |
| Bsp143I | GATC | 6 cut(s) | 98, 114, 130, 244, 654, 727 |
| BspACI | CCGC | 5 cut(s) | 59, 62, 404, 761, 824 |
| BspANI | GGCC | 1 cut(s) | 68 |
| BspCNI | CTCAG | 3 cut(s) | 91, 696, 847 |
| BspFNI | CGCG | 1 cut(s) | 34 |
| BspHI | TCATGA | 1 cut(s) | 937 |
| BspLI | GGNNCC | 2 cut(s) | 144, 156 |
| BspMAI | CTGCAG | 1 cut(s) | 735 |
| BspPI | GGATC | 4 cut(s) | 93, 138, 239, 735 |
| BspT107I | GGYRCC | 1 cut(s) | 154 |
| BsrDI | GCAATG | 1 cut(s) | 890 |
| BssECI | CCNNGG | 2 cut(s) | 54, 866 |
| BssMI | GATC | 6 cut(s) | 98, 114, 130, 244, 654, 727 |
| BssNI | GRCGYC | 1 cut(s) | 83 |
| Bst2UI | CCWGG | 2 cut(s) | 380, 868 |
| Bst4CI | ACNGT | 1 cut(s) | 445 |
| Bst6I | CTCTTC | 4 cut(s) | 198, 537, 561, 600 |
| BstACI | GRCGYC | 1 cut(s) | 83 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 701 |
| BstBAI | YACGTR | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 4 cut(s) | 51, 517, 975, 999 |
| BstDEI | CTNAG | 4 cut(s) | 78, 683, 767, 855 |
| BstF5I | GGATG | 1 cut(s) | 862 |
| BstFNI | CGCG | 1 cut(s) | 34 |
| BstHHI | GCGC | 1 cut(s) | 36 |
| BstKTI | GATC | 6 cut(s) | 101, 117, 133, 247, 657, 730 |
| BstMBI | GATC | 6 cut(s) | 98, 114, 130, 244, 654, 727 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 59, 65, 74, 701, 821 |
| BstNI | CCWGG | 2 cut(s) | 380, 868 |
| BstNSI | RCATGY | 2 cut(s) | 370, 523 |
| BstSCI | CCNGG | 2 cut(s) | 378, 866 |
| BstSFI | CTRYAG | 3 cut(s) | 497, 658, 731 |
| BstUI | CGCG | 1 cut(s) | 34 |
| BstV1I | GCAGC | 5 cut(s) | 106, 688, 802, 958, 1027 |
| BstX2I | RGATCY | 3 cut(s) | 130, 654, 727 |
| BstYI | RGATCY | 3 cut(s) | 130, 654, 727 |
| Bsu36I | CCTNAGG | 1 cut(s) | 855 |
| BsuRI | GGCC | 1 cut(s) | 68 |
| BtsCI | GGATG | 1 cut(s) | 862 |
| Cac8I | GCNNGC | 4 cut(s) | 51, 517, 975, 999 |
| CciI | TCATGA | 1 cut(s) | 937 |
| CfoI | GCGC | 1 cut(s) | 36 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 2 cut(s) | 10, 72 |
| Csp6I | GTAC | 2 cut(s) | 538, 632 |
| CviAII | CATG | 5 cut(s) | 334, 367, 520, 598, 938 |
| CviQI | GTAC | 2 cut(s) | 538, 632 |
| DdeI | CTNAG | 4 cut(s) | 78, 683, 767, 855 |
| DpnI | GATC | 6 cut(s) | 100, 116, 132, 246, 656, 729 |
| DpnII | GATC | 6 cut(s) | 98, 114, 130, 244, 654, 727 |
| Eam1104I | CTCTTC | 4 cut(s) | 198, 537, 561, 600 |
| EarI | CTCTTC | 4 cut(s) | 198, 537, 561, 600 |
| EciI | GGCGGA | 1 cut(s) | 77 |
| Ecl136II | GAGCTC | 1 cut(s) | 237 |
| Eco24I | GRGCYC | 1 cut(s) | 239 |
| Eco53kI | GAGCTC | 1 cut(s) | 237 |
| Eco57I | CTGAAG | 1 cut(s) | 92 |
| Eco81I | CCTNAGG | 1 cut(s) | 855 |
| EcoICRI | GAGCTC | 1 cut(s) | 237 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRI | GAATTC | 2 cut(s) | 712, 740 |
| EcoRII | CCWGG | 2 cut(s) | 378, 866 |
| EcoT38I | GRGCYC | 1 cut(s) | 239 |
| FaeI | CATG | 5 cut(s) | 337, 370, 523, 601, 941 |
| FaqI | GGGAC | 3 cut(s) | 225, 648, 890 |
| FatI | CATG | 5 cut(s) | 333, 366, 519, 597, 937 |
| FblI | GTMKAC | 1 cut(s) | 24 |
| Fnu4HI | GCNGC | 6 cut(s) | 60, 95, 702, 816, 947, 1016 |
| FokI | GGATG | 1 cut(s) | 849 |
| FriOI | GRGCYC | 1 cut(s) | 239 |
| Fsp4HI | GCNGC | 6 cut(s) | 60, 95, 702, 816, 947, 1016 |
| GlaI | GCGC | 1 cut(s) | 35 |
| GluI | GCNGC | 6 cut(s) | 60, 95, 702, 816, 947, 1016 |
| GsaI | CCCAGC | 1 cut(s) | 877 |
| GsuI | CTGGAG | 1 cut(s) | 889 |
| HaeIII | GGCC | 1 cut(s) | 68 |
| HapII | CCGG | 3 cut(s) | 128, 182, 248 |
| HgaI | GACGC | 2 cut(s) | 10, 72 |
| HhaI | GCGC | 1 cut(s) | 36 |
| Hin1I | GRCGYC | 1 cut(s) | 83 |
| Hin1II | CATG | 5 cut(s) | 337, 370, 523, 601, 941 |
| Hin6I | GCGC | 1 cut(s) | 34 |
| HinP1I | GCGC | 1 cut(s) | 34 |
| HinfI | GANTC | 5 cut(s) | 176, 213, 687, 795, 1022 |
| HpaII | CCGG | 3 cut(s) | 128, 182, 248 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 3 cut(s) | 25, 632, 843 |
| Hpy188I | TCNGA | 7 cut(s) | 147, 361, 427, 686, 727, 910, 1027 |
| Hpy188III | TCNNGA | 4 cut(s) | 217, 643, 707, 938 |
| Hpy8I | GTNNAC | 3 cut(s) | 25, 632, 843 |
| Hpy99I | CGWCG | 2 cut(s) | 11, 43 |
| HpyAV | CCTTC | 7 cut(s) | 5, 67, 187, 279, 334, 944, 1000 |
| HpyCH4III | ACNGT | 1 cut(s) | 445 |
| HpyCH4IV | ACGT | 2 cut(s) | 477, 559 |
| HpyCH4V | TGCA | 8 cut(s) | 346, 519, 695, 733, 818, 883, 946, 997 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 59, 65, 74, 701, 821 |
| HpyF3I | CTNAG | 4 cut(s) | 78, 683, 767, 855 |
| HpySE526I | ACGT | 2 cut(s) | 477, 559 |
| Hsp92I | GRCGYC | 1 cut(s) | 83 |
| Hsp92II | CATG | 5 cut(s) | 337, 370, 523, 601, 941 |
| HspAI | GCGC | 1 cut(s) | 34 |
| Kzo9I | GATC | 6 cut(s) | 98, 114, 130, 244, 654, 727 |
| LmnI | GCTCC | 1 cut(s) | 870 |
| Lsp1109I | GCAGC | 5 cut(s) | 106, 688, 802, 958, 1027 |
| LweI | GCATC | 2 cut(s) | 292, 827 |
| MaeII | ACGT | 2 cut(s) | 477, 559 |
| MaeIII | GTNAC | 1 cut(s) | 329 |
| MalI | GATC | 6 cut(s) | 100, 116, 132, 246, 656, 729 |
| MboI | GATC | 6 cut(s) | 98, 114, 130, 244, 654, 727 |
| MflI | RGATCY | 3 cut(s) | 130, 654, 727 |
| MhlI | GDGCHC | 1 cut(s) | 239 |
| MluCI | AATT | 9 cut(s) | 171, 293, 349, 589, 638, 676, 712, 740, 967 |
| MlyI | GAGTC | 2 cut(s) | 185, 207 |
| MmeI | TCCRAC | 1 cut(s) | 594 |
| MspA1I | CMGCKG | 2 cut(s) | 824, 949 |
| MspI | CCGG | 3 cut(s) | 128, 182, 248 |
| MspR9I | CCNGG | 2 cut(s) | 380, 868 |
| MvaI | CCWGG | 2 cut(s) | 380, 868 |
| MvnI | CGCG | 1 cut(s) | 34 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 59, 65, 74, 701, 821 |
| NdeII | GATC | 6 cut(s) | 98, 114, 130, 244, 654, 727 |
| NlaIII | CATG | 5 cut(s) | 337, 370, 523, 601, 941 |
| NlaIV | GGNNCC | 2 cut(s) | 144, 156 |
| NmeAIII | GCCGAG | 1 cut(s) | 35 |
| NspI | RCATGY | 2 cut(s) | 370, 523 |
| PagI | TCATGA | 1 cut(s) | 937 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 38 |
| PfeI | GAWTC | 3 cut(s) | 687, 795, 1022 |
| PkrI | GCNGC | 6 cut(s) | 61, 96, 703, 817, 948, 1017 |
| PleI | GAGTC | 2 cut(s) | 184, 207 |
| PpsI | GAGTC | 2 cut(s) | 184, 207 |
| Ppu21I | YACGTR | 1 cut(s) | 560 |
| PsiI | TTATAA | 1 cut(s) | 900 |
| Psp124BI | GAGCTC | 1 cut(s) | 239 |
| Psp6I | CCWGG | 2 cut(s) | 378, 866 |
| PspFI | CCCAGC | 1 cut(s) | 873 |
| PspGI | CCWGG | 2 cut(s) | 378, 866 |
| PspN4I | GGNNCC | 2 cut(s) | 144, 156 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PstI | CTGCAG | 1 cut(s) | 735 |
| PsuI | RGATCY | 3 cut(s) | 130, 654, 727 |
| PvuII | CAGCTG | 1 cut(s) | 949 |
| RsaI | GTAC | 2 cut(s) | 539, 633 |
| RsaNI | GTAC | 2 cut(s) | 538, 632 |
| SacI | GAGCTC | 1 cut(s) | 239 |
| SatI | GCNGC | 6 cut(s) | 60, 95, 702, 816, 947, 1016 |
| Sau3AI | GATC | 6 cut(s) | 98, 114, 130, 244, 654, 727 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 2 cut(s) | 185, 207 |
| ScrFI | CCNGG | 2 cut(s) | 380, 868 |
| SduI | GDGCHC | 1 cut(s) | 239 |
| SfaNI | GCATC | 2 cut(s) | 292, 827 |
| SfcI | CTRYAG | 3 cut(s) | 497, 658, 731 |
| SmlI | CTYRAG | 2 cut(s) | 215, 705 |
| SmoI | CTYRAG | 2 cut(s) | 215, 705 |
| Sse9I | AATT | 9 cut(s) | 171, 293, 349, 589, 638, 676, 712, 740, 967 |
| SsiI | CCGC | 5 cut(s) | 59, 62, 404, 761, 824 |
| SstI | GAGCTC | 1 cut(s) | 239 |
| StyD4I | CCNGG | 2 cut(s) | 378, 866 |
| TaaI | ACNGT | 1 cut(s) | 445 |
| TaiI | ACGT | 2 cut(s) | 480, 562 |
| TaqI | TCGA | 5 cut(s) | 38, 239, 456, 533, 793 |
| TasI | AATT | 9 cut(s) | 171, 293, 349, 589, 638, 676, 712, 740, 967 |
| TatI | WGTACW | 1 cut(s) | 631 |
| TauI | GCSGC | 1 cut(s) | 62 |
| TfiI | GAWTC | 3 cut(s) | 687, 795, 1022 |
| TseI | GCWGC | 5 cut(s) | 94, 701, 815, 946, 1015 |
| TspDTI | ATGAA | 3 cut(s) | 278, 851, 926 |
| TspGWI | ACGGA | 2 cut(s) | 91, 236 |
| XapI | RAATTY | 4 cut(s) | 638, 676, 712, 740 |
| XceI | RCATGY | 2 cut(s) | 370, 523 |
| XmiI | GTMKAC | 1 cut(s) | 24 |