RchiOBHm_Chr5g0029731
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000240
Physical Location & Seq
Reverse (-)
23382947 .. 23383394
448 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30909

Sequence Viewer

Length: 321 bp
ATGGGAGGGCCAAAGGGGAAGAAAGAAAAGGTGGGAGGTGCGGCCAAATTGTCTAAACAAATAGATCGGCTTGTTGATGTAGTCGAGAGTAGGAGTACAGCCACCTCTGTTCGTGATAATGGTACCTCACATGGAACTAGTATTCAGGAGGTGATGAAATTTGTAGCAACATTACCAGGAGCGGAAACTGGTACCAAGTTATGGTGGTTTGCAACGGAGCTGTTTTGCTCTCAAGAGAAGCGAGAGATGTTTTCTATTATGACAGATGTTGATCTCAAACTCCAGTTTCTGATTCTTAATCAGAAAAAAGCTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

106

Amino Acids

11.72

Weight (kDa)

9.13

Isoelectric Point (pI)

22.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 122, 191
AccB1I GGYRCC 2 cut(s) 122, 191
AccB7I CCANNNNNTGG 1 cut(s) 201
AccBSI CCGCTC 1 cut(s) 182
AciI CCGC 2 cut(s) 41, 182
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 3 cut(s) 97, 124, 193
AfiI CCNNNNNNNGG 1 cut(s) 201
AhlI ACTAGT 1 cut(s) 137
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 220, 311
AluI AGCT 2 cut(s) 220, 311
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 2 cut(s) 8, 42
ApoI RAATTY 1 cut(s) 158
Asp718I GGTACC 2 cut(s) 122, 191
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 163
BanI GGYRCC 2 cut(s) 122, 191
BciT130I CCWGG 1 cut(s) 177
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 1 cut(s) 138
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 124, 193
BmrFI CCNGG 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 193, 283
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 1 cut(s) 177
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 193, 283
BshFI GGCC 2 cut(s) 10, 44
BshNI GGYRCC 2 cut(s) 122, 191
BslI CCNNNNNNNGG 1 cut(s) 201
BsnI GGCC 2 cut(s) 10, 44
Bsp143I GATC 2 cut(s) 64, 271
BspACI CCGC 2 cut(s) 41, 182
BspANI GGCC 2 cut(s) 10, 44
BspLI GGNNCC 2 cut(s) 124, 193
BspT107I GGYRCC 2 cut(s) 122, 191
BsrBI CCGCTC 1 cut(s) 182
BsrI ACTGG 2 cut(s) 193, 283
BssMI GATC 2 cut(s) 64, 271
Bst2UI CCWGG 1 cut(s) 177
BstKTI GATC 2 cut(s) 67, 274
BstMBI GATC 2 cut(s) 64, 271
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BsuRI GGCC 2 cut(s) 10, 44
CaiI CAGNNNCTG 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 3 cut(s) 96, 123, 192
CviAII CATG 1 cut(s) 131
CviJI RGCY 6 cut(s) 10, 44, 70, 101, 220, 311
CviKI_1 RGCY 6 cut(s) 10, 44, 70, 101, 220, 311
CviQI GTAC 3 cut(s) 96, 123, 192
DpnI GATC 2 cut(s) 66, 273
DpnII GATC 2 cut(s) 64, 271
EaeI YGGCCR 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 134
FaiI YATR 3 cut(s) 132, 202, 260
FatI CATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 138
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 2 cut(s) 10, 44
Hin1II CATG 1 cut(s) 134
HinfI GANTC 1 cut(s) 292
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 2 cut(s) 291, 303
Hpy188III TCNNGA 4 cut(s) 85, 113, 146, 233
HpyCH4V TGCA 1 cut(s) 212
Hsp92II CATG 1 cut(s) 134
KpnI GGTACC 2 cut(s) 126, 195
Kzo9I GATC 2 cut(s) 64, 271
LmnI GCTCC 2 cut(s) 179, 217
LpnPI CCDG 5 cut(s) 131, 162, 174, 189, 296
MaeI CTAG 1 cut(s) 138
MalI GATC 2 cut(s) 66, 273
MbiI CCGCTC 1 cut(s) 182
MboI GATC 2 cut(s) 64, 271
MboII GAAGA 1 cut(s) 31
MluCI AATT 3 cut(s) 47, 158, 316
MnlI CCTC 4 cut(s) 29, 115, 136, 142
MseI TTAA 2 cut(s) 297, 319
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
NdeII GATC 2 cut(s) 64, 271
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 2 cut(s) 124, 193
PfeI GAWTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 124, 193
PspPI GGNCC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 289
RsaI GTAC 3 cut(s) 97, 124, 193
RsaNI GTAC 3 cut(s) 96, 123, 192
SaqAI TTAA 2 cut(s) 297, 319
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 64, 271
Sau96I GGNCC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 177
SetI ASST 7 cut(s) 33, 40, 107, 128, 153, 222, 313
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 3 cut(s) 47, 158, 316
SsiI CCGC 2 cut(s) 41, 182
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 84
TasI AATT 3 cut(s) 47, 158, 316
TatI WGTACW 1 cut(s) 95
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 297, 319
Tru9I TTAA 2 cut(s) 297, 319
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 201
XapI RAATTY 1 cut(s) 158
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.