Rw6G034450
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000240
Physical Location & Seq
Reverse (-)
59038366 .. 59041285
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034450.1

Sequence Viewer

Length: 1800 bp
ATGGGAAGGAAGAATACTAATGAAATTGGGGGAAGTGGATCACAAGTTAAAGCTGTATGGAATGATTATAATGTATCCAAATTTTGTGATCTGTGCATCAAGTTGGTGGATGCTGGACGTCGTCCTAATACTCATTTTGACAGAGAAGGATGGGAGAGTTTGGTAGTAAACTTCAGTAAAGAAACTGGCAATAACTATGATAAAACTCAATTGAAGAATAAGTGGGATTCACTTAAAATTGAATGGAAGTTGTGGAAAGAACTCGTTGGCAAGGAAACTGGTTTAGGGTGGAATCCTAGCAAGGGCACTGTTGATGCACCTGCCGAATGGTGGCATAGTAAGATTCAGGTCAATCCCGAATATGCAAAACTGCGTAAAAAAGGTCTTAATCCTGAATTGGAGGAGAAGCTAGATAGAATGTTTTCAAACATTATAGCCACTGGTGAACATGCTTGGGCACCTTCTTGTGGGAACCTTCCATCTCCAAAATCAGACATATGCAAGGATGATGAAGGTGTTTCAAGGAGAGGGAAAAAAAGATTGATTGATGAAGCTGAATTACAAGCTACAGCGGAAAAGAAACCTAAAGGACCCATTGTTTTAGGCAAGCAGAAGGTGGGAGGTGCTACAAAGTTATCTCAACAAATAGATCGTTTTATTAATGTAGTTGAGAATAAGAGTGCTGGAACATCAAACAGTGTGAAAAGTGCAGAAAGCTATACTATTGATGAAGCAATGAAAGCACTTGAGTCTGTCCCTTATTGCGAGCCTGGGAGTACTTTGTGGTTGTTTGCAACTCGACTTTTTTTGAATAAAGAAAAGAGAGAGATGTTTGCCACCATGAAAGATGATGTAATTAAGCTTCAATGGCTTCATGCTTTTGAGATATTAGGAATGTTCTTACACATTTTAGGACATGGGGTAGTAAATAGATTAGCACAAGAACGATTTCAACACTCTGGTGAGACTGTGAGTAGATATTTCACTTATGTTTTGGATATGGTGTGTAACTTGGCTATAGAAGTCATACAACCAGAGGATCGTGAGTTCAAGAATACTGCACCACAGATATTGAGGGATTCTAGATATATGCCTCATTTTAAGGATTGTATCGGTGCCATAGACGGTGTACATGTTCGTGCTTCAATTCGTCCTGCAGATCAAATACCCTATATTGGAAGAAAAGGGATGCCGACTCAAAACATAATGGCTGCATGTAACTTTGATATGCAATTCATATTTGCATGTGCAGGTTGGGAAGGTACTGCACATGATACAAGGATTTTCTTATCTGCCATACGGAATCCTAAGTGGAATTTTCCCAAGCCTCCTAGTGGAAAATATTATTTAGTTGATGCAGGATACCCCCAAATGAAAGGGTACCTGGGACCATATAAAAATAACACATATCATCTTCCAGATTTTCGTAGGGGTGGTGGCCCGACAGGCCCTAAGGAGGTATTCAACTACGTGCACTCTTCTCTCAGAAGCGTCATTGAACGCACTTTTGGAGTCTGGAAGAAAAAGTGGAAGATTTTAAGGGACATGCCTAACTATCCGTTTGACAAGCAAGTGAAGATAATCATTGCAACCATGGCACTTCATAACTACATAAGGAGACATGCTGAAAACGATAAACATTTTGATAAACATGGGAGCGAGAATAGCACTGAAGCTTATAAGACCACTGATATAGAGGATGATACACAAGGAGATCATCGTAGTCGTCATGATGTCGGTGCACAAGAAATGGAAGTATTAAGAAATAATATAGCCACAAGTTTAATGAATGCAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

599

Amino Acids

68.26

Weight (kDa)

9.0

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 20 - 112 4.7e-20 Myb/SANT-like DNA-binding domain
DUF8040 PF26138 291 - 336 2.2e-14 Domain of unknown function (DUF8040)
DDE_Tnp_1 PF01609 367 - 534 1.6e-09 Transposase DDE domain
DDE_Tnp_4 PF13359 374 - 536 1.6e-20 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 69, 1680
AarI CACCTGC 1 cut(s) 328
AatII GACGTC 1 cut(s) 121
Acc36I ACCTGC 2 cut(s) 328, 1241
Acc65I GGTACC 1 cut(s) 1380
AccB1I GGYRCC 3 cut(s) 457, 1115, 1380
AciI CCGC 1 cut(s) 572
AclWI GGATC 2 cut(s) 46, 1047
AcsI RAATTY 2 cut(s) 80, 1315
AcuI CTGAAG 2 cut(s) 157, 1692
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 4 cut(s) 778, 1131, 1264, 1382
AfiI CCNNNNNNNGG 6 cut(s) 302, 330, 467, 1175, 1334, 1456
AflIII ACRYGT 1 cut(s) 1132
AjnI CCWGG 2 cut(s) 769, 1383
AjuI GAANNNNNNNTTGG 2 cut(s) 1491, 1523
AleI CACNNNNGTG 1 cut(s) 960
AloI GAACNNNNNNTCC 2 cut(s) 1031, 1063
AluBI AGCT 7 cut(s) 53, 409, 554, 566, 717, 862, 1676
AluI AGCT 7 cut(s) 53, 409, 554, 566, 717, 862, 1676
Alw21I GWGCWC 2 cut(s) 1476, 1744
Alw26I GTCTC 2 cut(s) 959, 1612
Alw44I GTGCAC 2 cut(s) 1472, 1740
AlwI GGATC 2 cut(s) 46, 1047
AoxI GGCC 2 cut(s) 1438, 1447
ApaLI GTGCAC 2 cut(s) 1472, 1740
ApeKI GCWGC 1 cut(s) 1211
ApoI RAATTY 2 cut(s) 80, 1315
AseI ATTAAT 1 cut(s) 660
Asp700I GAANNNNTTC 2 cut(s) 421, 948
Asp718I GGTACC 1 cut(s) 1380
AspS9I GGNCC 4 cut(s) 590, 1388, 1439, 1448
AsuHPI GGTGA 2 cut(s) 455, 974
AvaII GGWCC 2 cut(s) 590, 1388
AxyI CCTNAGG 1 cut(s) 1452
BaeGI GKGCMC 4 cut(s) 308, 460, 1476, 1744
BanI GGYRCC 3 cut(s) 457, 1115, 1380
BarI GAAGNNNNNNTAC 5 cut(s) 30, 543, 575, 846, 878
Bbv12I GWGCWC 2 cut(s) 1476, 1744
BbvI GCAGC 1 cut(s) 1198
BccI CCATC 2 cut(s) 144, 487
BciT130I CCWGG 2 cut(s) 771, 1385
BciVI GTATCC 2 cut(s) 85, 1355
BcoDI GTCTC 2 cut(s) 959, 1612
BfaI CTAG 4 cut(s) 297, 410, 1083, 1332
BfmI CTRYAG 3 cut(s) 567, 1017, 1155
BfuAI ACCTGC 2 cut(s) 328, 1241
BfuI GTATCC 2 cut(s) 85, 1355
BglI GCCNNNNNGGC 1 cut(s) 1446
BisI GCNGC 1 cut(s) 1212
BlsI GCNGC 1 cut(s) 1213
BmcAI AGTACT 1 cut(s) 778
Bme1390I CCNGG 2 cut(s) 771, 1385
Bme18I GGWCC 2 cut(s) 590, 1388
BmgT120I GGNCC 4 cut(s) 590, 1388, 1439, 1448
BmiI GGNNCC 6 cut(s) 459, 473, 592, 1117, 1382, 1389
BmrFI CCNGG 2 cut(s) 771, 1385
BmsI GCATC 5 cut(s) 100, 105, 304, 1179, 1345
BpuEI CTTGAG 1 cut(s) 767
BsaAI YACGTR 1 cut(s) 1471
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 770, 1384, 1593
Bsc4I CCNNNNNNNGG 6 cut(s) 302, 330, 467, 1175, 1334, 1456
Bse1I ACTGG 3 cut(s) 190, 283, 445
Bse21I CCTNAGG 1 cut(s) 1452
Bse3DI GCAATG 3 cut(s) 741, 1584, 1800
BseBI CCWGG 2 cut(s) 771, 1385
BseDI CCNNGG 3 cut(s) 770, 1384, 1593
BseGI GGATG 5 cut(s) 115, 155, 511, 1194, 1705
BseLI CCNNNNNNNGG 6 cut(s) 302, 330, 467, 1175, 1334, 1456
BseMI GCAATG 3 cut(s) 741, 1584, 1800
BseMII CTCAG 1 cut(s) 1498
BseNI ACTGG 3 cut(s) 190, 283, 445
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 4 cut(s) 308, 460, 1476, 1744
BseXI GCAGC 1 cut(s) 1198
BsgI GTGCAG 4 cut(s) 729, 1044, 1251, 1269
BshFI GGCC 2 cut(s) 1440, 1449
BshNI GGYRCC 3 cut(s) 457, 1115, 1380
BsiHKAI GWGCWC 2 cut(s) 1476, 1744
BslFI GGGAC 3 cut(s) 740, 1401, 1556
BslI CCNNNNNNNGG 6 cut(s) 302, 330, 467, 1175, 1334, 1456
BsmAI GTCTC 2 cut(s) 959, 1612
BsmFI GGGAC 3 cut(s) 740, 1401, 1556
BsmI GAATGC 1 cut(s) 1795
BsnI GGCC 2 cut(s) 1440, 1449
Bsp1286I GDGCHC 4 cut(s) 308, 460, 1476, 1744
Bsp1407I TGTACA 1 cut(s) 1129
Bsp143I GATC 6 cut(s) 38, 88, 649, 1039, 1159, 1714
Bsp19I CCATGG 1 cut(s) 1593
BspACI CCGC 1 cut(s) 572
BspANI GGCC 2 cut(s) 1440, 1449
BspCNI CTCAG 1 cut(s) 1497
BspHI TCATGA 1 cut(s) 1729
BspLI GGNNCC 6 cut(s) 459, 473, 592, 1117, 1382, 1389
BspMAI CTGCAG 1 cut(s) 1159
BspMI ACCTGC 2 cut(s) 328, 1241
BspPI GGATC 2 cut(s) 46, 1047
BspT107I GGYRCC 3 cut(s) 457, 1115, 1380
BsrDI GCAATG 3 cut(s) 741, 1584, 1800
BsrGI TGTACA 1 cut(s) 1129
BsrI ACTGG 3 cut(s) 190, 283, 445
BssECI CCNNGG 3 cut(s) 770, 1384, 1593
BssMI GATC 6 cut(s) 38, 88, 649, 1039, 1159, 1714
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 1593
Bst2UI CCWGG 2 cut(s) 771, 1385
Bst4CI ACNGT 4 cut(s) 310, 698, 970, 1127
Bst6I CTCTTC 1 cut(s) 1483
BstACI GRCGYC 1 cut(s) 118
BstAUI TGTACA 1 cut(s) 1129
BstBAI YACGTR 1 cut(s) 1471
BstC8I GCNNGC 2 cut(s) 608, 767
BstDEI CTNAG 3 cut(s) 1308, 1452, 1484
BstDSI CCRYGG 1 cut(s) 1593
BstF5I GGATG 5 cut(s) 115, 155, 511, 1194, 1705
BstKTI GATC 6 cut(s) 41, 91, 652, 1042, 1162, 1717
BstMAI GTCTC 2 cut(s) 959, 1612
BstMBI GATC 6 cut(s) 38, 88, 649, 1039, 1159, 1714
BstMWI GCNNNNNNNGC 5 cut(s) 740, 868, 1446, 1595, 1665
BstNI CCWGG 2 cut(s) 771, 1385
BstNSI RCATGY 6 cut(s) 452, 1136, 1218, 1248, 1549, 1625
BstSCI CCNGG 2 cut(s) 769, 1383
BstSFI CTRYAG 3 cut(s) 567, 1017, 1155
BstSLI GKGCMC 4 cut(s) 308, 460, 1476, 1744
BstV1I GCAGC 1 cut(s) 1198
Bsu36I CCTNAGG 1 cut(s) 1452
BsuI GTATCC 2 cut(s) 85, 1355
BsuRI GGCC 2 cut(s) 1440, 1449
BtgI CCRYGG 1 cut(s) 1593
BtsCI GGATG 5 cut(s) 115, 155, 511, 1194, 1705
BtsIMutI CAGTG 5 cut(s) 306, 438, 703, 1668, 1686
BveI ACCTGC 2 cut(s) 328, 1241
Cac8I GCNNGC 2 cut(s) 608, 767
CciI TCATGA 1 cut(s) 1729
Cfr13I GGNCC 4 cut(s) 590, 1388, 1439, 1448
CseI GACGC 1 cut(s) 1480
Csp6I GTAC 4 cut(s) 777, 1130, 1263, 1381
CspCI CAANNNNNGTGG 2 cut(s) 1053, 1088
CviQI GTAC 4 cut(s) 777, 1130, 1263, 1381
DdeI CTNAG 3 cut(s) 1308, 1452, 1484
DpnI GATC 6 cut(s) 40, 90, 651, 1041, 1161, 1716
DpnII GATC 6 cut(s) 38, 88, 649, 1039, 1159, 1714
Eam1104I CTCTTC 1 cut(s) 1483
EarI CTCTTC 1 cut(s) 1483
Eco130I CCWWGG 1 cut(s) 1593
Eco47I GGWCC 2 cut(s) 590, 1388
Eco57I CTGAAG 2 cut(s) 157, 1692
Eco81I CCTNAGG 1 cut(s) 1452
EcoO109I RGGNCCY 2 cut(s) 590, 1448
EcoRII CCWGG 2 cut(s) 769, 1383
EcoT14I CCWWGG 1 cut(s) 1593
ErhI CCWWGG 1 cut(s) 1593
FaqI GGGAC 3 cut(s) 740, 1401, 1556
FauNDI CATATG 1 cut(s) 497
Fnu4HI GCNGC 1 cut(s) 1212
FokI GGATG 5 cut(s) 122, 162, 518, 1201, 1712
Fsp4HI GCNGC 1 cut(s) 1212
FspBI CTAG 4 cut(s) 297, 410, 1083, 1332
GluI GCNGC 1 cut(s) 1212
HaeIII GGCC 2 cut(s) 1440, 1449
HgaI GACGC 1 cut(s) 1480
Hin1I GRCGYC 1 cut(s) 118
HindIII AAGCTT 2 cut(s) 860, 1674
HinfI GANTC 8 cut(s) 227, 292, 343, 749, 1079, 1195, 1303, 1512
HphI GGTGA 2 cut(s) 455, 974
Hpy166II GTNNAC 5 cut(s) 169, 446, 1130, 1474, 1742
Hpy188I TCNGA 2 cut(s) 493, 1487
Hpy188III TCNNGA 8 cut(s) 356, 392, 1043, 1051, 1083, 1418, 1516, 1730
Hpy8I GTNNAC 5 cut(s) 169, 446, 1130, 1474, 1742
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 6 cut(s) 140, 471, 485, 506, 607, 1253
HpyCH4III ACNGT 4 cut(s) 310, 698, 970, 1127
HpyCH4IV ACGT 2 cut(s) 118, 1470
HpyF10VI GCNNNNNNNGC 5 cut(s) 740, 868, 1446, 1595, 1665
HpyF3I CTNAG 3 cut(s) 1308, 1452, 1484
HpySE526I ACGT 2 cut(s) 118, 1470
Hsp92I GRCGYC 1 cut(s) 118
KpnI GGTACC 1 cut(s) 1384
Kzo9I GATC 6 cut(s) 38, 88, 649, 1039, 1159, 1714
LmnI GCTCC 1 cut(s) 1656
Lsp1109I GCAGC 1 cut(s) 1198
LweI GCATC 5 cut(s) 100, 105, 304, 1179, 1345
MaeI CTAG 4 cut(s) 297, 410, 1083, 1332
MaeII ACGT 2 cut(s) 118, 1470
MaeIII GTNAC 2 cut(s) 1007, 1217
MalI GATC 6 cut(s) 40, 90, 651, 1041, 1161, 1716
MboI GATC 6 cut(s) 38, 88, 649, 1039, 1159, 1714
MboII GAAGA 8 cut(s) 22, 226, 1191, 1406, 1470, 1531, 1543, 1588
MfeI CAATTG 1 cut(s) 209
MhlI GDGCHC 4 cut(s) 308, 460, 1476, 1744
MlyI GAGTC 3 cut(s) 758, 1189, 1521
MnlI CCTC 9 cut(s) 394, 521, 614, 1030, 1068, 1104, 1338, 1450, 1690
MroXI GAANNNNTTC 2 cut(s) 421, 948
MseI TTAA 9 cut(s) 48, 234, 387, 660, 858, 1101, 1538, 1760, 1784
MslI CAYNNNNRTG 2 cut(s) 960, 1137
MspA1I CMGCKG 1 cut(s) 572
MspR9I CCNGG 2 cut(s) 771, 1385
MunI CAATTG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 1795
MvaI CCWGG 2 cut(s) 771, 1385
MwoI GCNNNNNNNGC 5 cut(s) 740, 868, 1446, 1595, 1665
NcoI CCATGG 1 cut(s) 1593
NdeI CATATG 1 cut(s) 497
NdeII GATC 6 cut(s) 38, 88, 649, 1039, 1159, 1714
NlaIV GGNNCC 6 cut(s) 459, 473, 592, 1117, 1382, 1389
NspI RCATGY 6 cut(s) 452, 1136, 1218, 1248, 1549, 1625
OliI CACNNNNGTG 1 cut(s) 960
PagI TCATGA 1 cut(s) 1729
PaqCI CACCTGC 1 cut(s) 328
PciI ACATGT 1 cut(s) 1132
PctI GAATGC 1 cut(s) 1795
PdmI GAANNNNTTC 2 cut(s) 421, 948
PfeI GAWTC 5 cut(s) 227, 292, 343, 1079, 1303
PflFI GACNNNGTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 1213
PleI GAGTC 3 cut(s) 757, 1189, 1520
PpsI GAGTC 3 cut(s) 757, 1189, 1520
Ppu21I YACGTR 1 cut(s) 1471
PpuMI RGGWCCY 1 cut(s) 590
PscI ACATGT 1 cut(s) 1132
PshBI ATTAAT 1 cut(s) 660
PsiI TTATAA 2 cut(s) 69, 1680
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 2 cut(s) 769, 1383
PspGI CCWGG 2 cut(s) 769, 1383
PspN4I GGNNCC 6 cut(s) 459, 473, 592, 1117, 1382, 1389
PspPI GGNCC 4 cut(s) 590, 1388, 1439, 1448
PspPPI RGGWCCY 1 cut(s) 590
PstI CTGCAG 1 cut(s) 1159
PsyI GACNNNGTC 1 cut(s) 120
RsaI GTAC 4 cut(s) 778, 1131, 1264, 1382
RsaNI GTAC 4 cut(s) 777, 1130, 1263, 1381
RseI CAYNNNNRTG 2 cut(s) 960, 1137
SaqAI TTAA 9 cut(s) 48, 234, 387, 660, 858, 1101, 1538, 1760, 1784
SatI GCNGC 1 cut(s) 1212
Sau3AI GATC 6 cut(s) 38, 88, 649, 1039, 1159, 1714
Sau96I GGNCC 4 cut(s) 590, 1388, 1439, 1448
ScaI AGTACT 1 cut(s) 778
SchI GAGTC 3 cut(s) 758, 1189, 1521
ScrFI CCNGG 2 cut(s) 771, 1385
SduI GDGCHC 4 cut(s) 308, 460, 1476, 1744
SfaNI GCATC 5 cut(s) 100, 105, 304, 1179, 1345
SfcI CTRYAG 3 cut(s) 567, 1017, 1155
SfiI GGCCNNNNNGGCC 1 cut(s) 1446
SinI GGWCC 2 cut(s) 590, 1388
SmiMI CAYNNNNRTG 2 cut(s) 960, 1137
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SsiI CCGC 1 cut(s) 572
SspI AATATT 1 cut(s) 1343
SspMI CTAG 4 cut(s) 297, 410, 1083, 1332
StyD4I CCNGG 2 cut(s) 769, 1383
StyI CCWWGG 1 cut(s) 1593
TaaI ACNGT 4 cut(s) 310, 698, 970, 1127
TaiI ACGT 2 cut(s) 121, 1473
TaqI TCGA 1 cut(s) 799
TatI WGTACW 2 cut(s) 776, 1129
TfiI GAWTC 5 cut(s) 227, 292, 343, 1079, 1303
Tru1I TTAA 9 cut(s) 48, 234, 387, 660, 858, 1101, 1538, 1760, 1784
Tru9I TTAA 9 cut(s) 48, 234, 387, 660, 858, 1101, 1538, 1760, 1784
TscAI CASTG 5 cut(s) 313, 445, 703, 1675, 1693
TseI GCWGC 1 cut(s) 1211
TspGWI ACGGA 2 cut(s) 1315, 1548
TspRI CASTG 5 cut(s) 313, 445, 703, 1675, 1693
Tth111I GACNNNGTC 1 cut(s) 120
VneI GTGCAC 2 cut(s) 1472, 1740
VpaK11BI GGWCC 2 cut(s) 590, 1388
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 2 cut(s) 80, 1315
XbaI TCTAGA 1 cut(s) 1082
XceI RCATGY 6 cut(s) 452, 1136, 1218, 1248, 1549, 1625
XmnI GAANNNNTTC 2 cut(s) 421, 948
XspI CTAG 4 cut(s) 297, 410, 1083, 1332
ZraI GACGTC 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.