Rmu_sc0001597.1_g000012
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001597.1
OG0000240
Physical Location & Seq
Forward (+)
28166 .. 30179
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001597.1_g000012.1.cds

Sequence Viewer

Length: 687 bp
atgctctgggcacccgggaaggttttgacacccaacccaccggtgatcatcaccgccatctcggtgactcatctcccagcagcgactctatatctcggggacttctcctataatgtcatattctcccagcagcatctcctctcgatgactctaatcatggactcacgatggcgagttgcttttaatgtaggacctgaaacacgcctcctctgccgtcaaaactcaaaacacctcagctcatcgatcgatctcttctgtgtcttcaaaacccgatttcgtcgctcctccgccacacgccccaaacccaaagcattcccggaccccagcttcttcaacctccttttgtacttgatgggaaagaagaaatccaccggtactgaaaatgtgggatctggaaaacaaatagccacatggccggatgaggtagtagctatattttgtgatatagctgctaaggaagtggccaagggaaacagacctagtatacattttgagacaaagggatggtcaaatgttatcatggcctttaaggagttaaccggaagggattacgataaaagccaactgaaaaataagtgggattcacttaaaaatgattggaaattgtggagttcacttttgcataaggaaactggtattggatgggatccggctaggaaaactgtcgacgcacctgctgaatggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

228

Amino Acids

25.82

Weight (kDa)

9.66

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 682
Acc36I ACCTGC 1 cut(s) 682
AccB1I GGYRCC 1 cut(s) 10
AccI GTMKAC 2 cut(s) 484, 666
AciI CCGC 2 cut(s) 54, 288
AclWI GGATC 3 cut(s) 397, 641, 654
AcoI YGGCCR 2 cut(s) 413, 462
AfaI GTAC 2 cut(s) 347, 376
AgeI ACCGGT 2 cut(s) 40, 371
AgsI TTSAA 2 cut(s) 265, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 621, 653
AluBI AGCT 4 cut(s) 237, 327, 431, 449
AluI AGCT 4 cut(s) 237, 327, 431, 449
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 3 cut(s) 397, 641, 654
Ama87I CYCGRG 2 cut(s) 14, 95
AoxI GGCC 3 cut(s) 413, 462, 522
ApeKI GCWGC 3 cut(s) 80, 130, 449
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AsiGI ACCGGT 2 cut(s) 40, 371
AspS9I GGNCC 2 cut(s) 191, 319
AsuC2I CCSGG 3 cut(s) 15, 16, 317
AsuHPI GGTGA 3 cut(s) 43, 55, 76
AvaI CYCGRG 2 cut(s) 14, 95
AvaII GGWCC 2 cut(s) 191, 319
BaeGI GKGCMC 1 cut(s) 13
BalI TGGCCA 1 cut(s) 464
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 253
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 92, 142, 436
BccI CCATC 5 cut(s) 65, 162, 346, 498, 636
BceAI ACGGC 1 cut(s) 198
BcgI CGANNNNNNTGC 1 cut(s) 656
BclI TGATCA 1 cut(s) 45
BcnI CCSGG 3 cut(s) 15, 16, 317
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 2 cut(s) 480, 654
BfuAI ACCTGC 1 cut(s) 682
BisI GCNGC 3 cut(s) 81, 131, 450
BlsI GCNGC 3 cut(s) 82, 132, 451
Bme1390I CCNGG 3 cut(s) 15, 16, 317
Bme18I GGWCC 2 cut(s) 191, 319
BmeT110I CYCGRG 2 cut(s) 14, 95
BmgT120I GGNCC 2 cut(s) 191, 319
BmiI GGNNCC 3 cut(s) 12, 321, 648
BmrFI CCNGG 3 cut(s) 15, 16, 317
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 253
Bpu10I CCTNAGC 2 cut(s) 233, 453
BpuMI CCSGG 3 cut(s) 15, 16, 317
Bsa29I ATCGAT 2 cut(s) 242, 246
BsaJI CCNNGG 2 cut(s) 14, 465
BsaWI WCCGGW 3 cut(s) 40, 371, 539
Bse118I RCCGGY 2 cut(s) 40, 371
Bse1I ACTGG 1 cut(s) 637
BseCI ATCGAT 2 cut(s) 242, 246
BseDI CCNNGG 2 cut(s) 14, 465
BseGI GGATG 3 cut(s) 424, 509, 647
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 3 cut(s) 128, 197, 274
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 3 cut(s) 92, 142, 436
BseYI CCCAGC 3 cut(s) 76, 126, 323
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 3 cut(s) 415, 464, 524
BshNI GGYRCC 1 cut(s) 10
BshTI ACCGGT 2 cut(s) 40, 371
BshVI ATCGAT 2 cut(s) 242, 246
BsiEI CGRYCG 1 cut(s) 246
BsiHKCI CYCGRG 2 cut(s) 14, 95
BsiSI CCGG 7 cut(s) 15, 41, 317, 372, 416, 540, 650
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 113
BsmI GAATGC 1 cut(s) 311
BsnI GGCC 3 cut(s) 415, 464, 524
BsoBI CYCGRG 2 cut(s) 14, 95
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 5 cut(s) 45, 243, 247, 389, 646
BspACI CCGC 2 cut(s) 54, 288
BspANI GGCC 3 cut(s) 415, 464, 524
BspCNI CTCAG 1 cut(s) 246
BspDI ATCGAT 2 cut(s) 242, 246
BspLI GGNNCC 3 cut(s) 12, 321, 648
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 3 cut(s) 397, 641, 654
BspT107I GGYRCC 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 40, 371
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 2 cut(s) 40, 371
BssECI CCNNGG 2 cut(s) 14, 465
BssMI GATC 5 cut(s) 45, 243, 247, 389, 646
BssNAI GTATAC 1 cut(s) 485
BssT1I CCWWGG 1 cut(s) 465
Bst1107I GTATAC 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 1 cut(s) 257
BstDEI CTNAG 2 cut(s) 233, 453
BstF5I GGATG 3 cut(s) 424, 509, 647
BstKTI GATC 5 cut(s) 48, 246, 250, 392, 649
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 5 cut(s) 45, 243, 247, 389, 646
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSCI CCNGG 3 cut(s) 13, 14, 315
BstSLI GKGCMC 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 92, 142, 436
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 2 cut(s) 389, 646
BstYI RGATCY 2 cut(s) 389, 646
BstZ17I GTATAC 1 cut(s) 485
Bsu15I ATCGAT 2 cut(s) 242, 246
BsuRI GGCC 3 cut(s) 415, 464, 524
BsuTUI ATCGAT 2 cut(s) 242, 246
BtsCI GGATG 3 cut(s) 424, 509, 647
BveI ACCTGC 1 cut(s) 682
Cfr10I RCCGGY 2 cut(s) 40, 371
Cfr13I GGNCC 2 cut(s) 191, 319
Cfr9I CCCGGG 1 cut(s) 14
ClaI ATCGAT 2 cut(s) 242, 246
CseI GACGC 1 cut(s) 677
Csp6I GTAC 2 cut(s) 346, 375
CspAI ACCGGT 2 cut(s) 40, 371
CviAII CATG 3 cut(s) 157, 411, 520
CviQI GTAC 2 cut(s) 346, 375
DdeI CTNAG 2 cut(s) 233, 453
DpnI GATC 5 cut(s) 47, 245, 249, 391, 648
DpnII GATC 5 cut(s) 45, 243, 247, 389, 646
EaeI YGGCCR 2 cut(s) 413, 462
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 465
Eco47I GGWCC 2 cut(s) 191, 319
Eco88I CYCGRG 2 cut(s) 14, 95
EcoO109I RGGNCCY 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 3 cut(s) 160, 414, 523
FaqI GGGAC 1 cut(s) 113
FatI CATG 3 cut(s) 156, 410, 519
FbaI TGATCA 1 cut(s) 45
FblI GTMKAC 2 cut(s) 484, 666
Fnu4HI GCNGC 3 cut(s) 81, 131, 450
FokI GGATG 3 cut(s) 431, 516, 654
Fsp4HI GCNGC 3 cut(s) 81, 131, 450
FspBI CTAG 2 cut(s) 480, 654
GluI GCNGC 3 cut(s) 81, 131, 450
GsaI CCCAGC 3 cut(s) 80, 130, 327
HaeIII GGCC 3 cut(s) 415, 464, 524
HapII CCGG 7 cut(s) 15, 41, 317, 372, 416, 540, 650
HgaI GACGC 1 cut(s) 677
Hin1II CATG 3 cut(s) 160, 414, 523
HincII GTYRAC 2 cut(s) 537, 667
HindII GTYRAC 2 cut(s) 537, 667
HinfI GANTC 5 cut(s) 67, 85, 148, 161, 581
HpaI GTTAAC 1 cut(s) 537
HpaII CCGG 7 cut(s) 15, 41, 317, 372, 416, 540, 650
HphI GGTGA 3 cut(s) 43, 55, 76
Hpy166II GTNNAC 4 cut(s) 485, 537, 614, 667
Hpy188III TCNNGA 3 cut(s) 142, 165, 393
Hpy8I GTNNAC 4 cut(s) 485, 537, 614, 667
Hpy99I CGWCG 2 cut(s) 282, 671
HpyAV CCTTC 2 cut(s) 13, 537
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4V TGCA 1 cut(s) 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 2 cut(s) 233, 453
Hsp92II CATG 3 cut(s) 160, 414, 523
Ksp22I TGATCA 1 cut(s) 45
KspAI GTTAAC 1 cut(s) 537
Kzo9I GATC 5 cut(s) 45, 243, 247, 389, 646
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 3 cut(s) 92, 142, 436
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 480, 654
MaeIII GTNAC 1 cut(s) 64
MalI GATC 5 cut(s) 47, 245, 249, 391, 648
MboI GATC 5 cut(s) 45, 243, 247, 389, 646
MboII GAAGA 4 cut(s) 244, 253, 322, 373
MflI RGATCY 2 cut(s) 389, 646
MhlI GDGCHC 1 cut(s) 13
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 1 cut(s) 602
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 4 cut(s) 61, 79, 142, 155
MnlI CCTC 7 cut(s) 149, 215, 218, 242, 295, 347, 415
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 4 cut(s) 183, 528, 536, 588
MslI CAYNNNNRTG 1 cut(s) 62
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 7 cut(s) 15, 41, 317, 372, 416, 540, 650
MspR9I CCNGG 3 cut(s) 15, 16, 317
Mva1269I GAATGC 1 cut(s) 311
MwoI GCNNNNNNNGC 1 cut(s) 210
NciI CCSGG 3 cut(s) 15, 16, 317
NdeII GATC 5 cut(s) 45, 243, 247, 389, 646
NlaIII CATG 3 cut(s) 160, 414, 523
NlaIV GGNNCC 3 cut(s) 12, 321, 648
NmuCI GTSAC 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 682
PctI GAATGC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 581
PfoI TCCNGGA 1 cut(s) 315
PinAI ACCGGT 2 cut(s) 40, 371
PkrI GCNGC 3 cut(s) 82, 132, 451
Ple19I CGATCG 1 cut(s) 246
PleI GAGTC 4 cut(s) 61, 79, 142, 155
PpsI GAGTC 4 cut(s) 61, 79, 142, 155
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
PspFI CCCAGC 3 cut(s) 76, 126, 323
PspN4I GGNNCC 3 cut(s) 12, 321, 648
PspPI GGNCC 2 cut(s) 191, 319
PspPPI RGGWCCY 1 cut(s) 191
PsuI RGATCY 2 cut(s) 389, 646
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 2 cut(s) 347, 376
RsaNI GTAC 2 cut(s) 346, 375
RseI CAYNNNNRTG 1 cut(s) 62
SalI GTCGAC 1 cut(s) 665
SaqAI TTAA 4 cut(s) 183, 528, 536, 588
SatI GCNGC 3 cut(s) 81, 131, 450
Sau3AI GATC 5 cut(s) 45, 243, 247, 389, 646
Sau96I GGNCC 2 cut(s) 191, 319
SchI GAGTC 4 cut(s) 61, 79, 142, 155
ScrFI CCNGG 3 cut(s) 15, 16, 317
SduI GDGCHC 1 cut(s) 13
SfaNI GCATC 1 cut(s) 142
SgrAI CRCCGGYG 1 cut(s) 40
SinI GGWCC 2 cut(s) 191, 319
SmaI CCCGGG 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 62
Sse9I AATT 1 cut(s) 602
SsiI CCGC 2 cut(s) 54, 288
SspMI CTAG 2 cut(s) 480, 654
StyD4I CCNGG 3 cut(s) 13, 14, 315
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 664
TaqI TCGA 4 cut(s) 143, 242, 246, 666
TasI AATT 1 cut(s) 602
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 4 cut(s) 183, 528, 536, 588
Tru9I TTAA 4 cut(s) 183, 528, 536, 588
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 80, 130, 449
Tsp45I GTSAC 1 cut(s) 64
TspMI CCCGGG 1 cut(s) 14
VpaK11BI GGWCC 2 cut(s) 191, 319
XmaI CCCGGG 1 cut(s) 14
XmiI GTMKAC 2 cut(s) 484, 666
XspI CTAG 2 cut(s) 480, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.