AT3G11300
MYB Family

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000240
Physical Location & Seq
Reverse (-)
3539347 .. 3540473
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G11300.1

Sequence Viewer

Length: 627 bp
ATGACGAAATCCATGTGGGGACATGAACACCACAAAGTGTTTGTGGACTTATGCAAGGAGCAAAAGATGTTGGGAAACAAACCTTCAGGCAGTGGAAGATATGGTGTAGACTTGTTCAATGCAGTCATATCACATATGAAATGGGATCCTCAGACAAAGACGTTTGGTGCCAGTATTCGAGACTGGGCCAACTATTTACAGGACCTAGAGTTTATCTTTGAAGGTACTTCCGGCAGCAAAAAGAAGCGAAGATGCAATCATCCTGATGAAGATACGCAAAGCGCGTCTAAAGCATATTGGTCATCGTCTTCACATGAGCTGCTTGTTGATTTGTTGTTCCAAGAGTCTTTAAAAGGAAACAGACCTATCAAAACCAGAGATAGAATGGCTAGTTGTTCTAGAATTCTTCTTCTTGTGGCTTCTCTCTCTGCTATATTTGACGAACATTCGTCGCTACAAGTTCAATGCGAAACGCTTTTCTATGGCAGGCTCATATATCGTGGCTTAGAGCAACGGTTTGGGGGTACTATTGTCATTCTTCCGAAACGTTGTGTACCTTACCCGTTTCCTCCGCCTCATACCGAGAAAATCATAGTTTTCGGGGAGATTTTTGAAGCTTTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

208

Amino Acids

23.77

Weight (kDa)

8.77

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 572
AclI AACGTT 1 cut(s) 547
AclWI GGATC 2 cut(s) 140, 153
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 69
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 3 cut(s) 226, 526, 555
AgsI TTSAA 4 cut(s) 118, 221, 464, 614
AluBI AGCT 2 cut(s) 319, 617
AluI AGCT 2 cut(s) 319, 617
Alw26I GTCTC 1 cut(s) 174
AlwI GGATC 2 cut(s) 140, 153
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 234, 319
ApoI RAATTY 1 cut(s) 402
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 186, 202
AvaII GGWCC 1 cut(s) 202
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BamHI GGATCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 246, 306
BcoDI GTCTC 1 cut(s) 174
BfaI CTAG 3 cut(s) 206, 390, 399
BisI GCNGC 2 cut(s) 235, 320
BlsI GCNGC 2 cut(s) 236, 321
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 186, 202
BmiI GGNNCC 2 cut(s) 147, 169
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 242
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 300
Bse1I ACTGG 2 cut(s) 171, 188
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 2 cut(s) 171, 188
BseXI GCAGC 2 cut(s) 246, 306
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 1 cut(s) 572
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 147, 169
BspPI GGATC 2 cut(s) 140, 153
BspT107I GGYRCC 1 cut(s) 167
BsrI ACTGG 2 cut(s) 171, 188
BssMI GATC 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 516
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 2 cut(s) 150, 505
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 284
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 246, 306
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 188
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 488
CfoI GCGC 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 186, 202
CseI GACGC 1 cut(s) 273
Csp6I GTAC 3 cut(s) 225, 525, 554
CviAII CATG 3 cut(s) 13, 23, 314
CviJI RGCY 7 cut(s) 188, 319, 389, 419, 490, 504, 617
CviKI_1 RGCY 7 cut(s) 188, 319, 389, 419, 490, 504, 617
CviQI GTAC 3 cut(s) 225, 525, 554
DdeI CTNAG 2 cut(s) 150, 505
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DraI TTTAAA 1 cut(s) 351
DraIII CACNNNGTG 1 cut(s) 37
EciI GGCGGA 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 402
FaeI CATG 3 cut(s) 16, 26, 317
FaqI GGGAC 1 cut(s) 33
FatI CATG 3 cut(s) 12, 22, 313
FauNDI CATATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 235, 320
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 235, 320
FspBI CTAG 3 cut(s) 206, 390, 399
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 235, 320
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 284
Hin1II CATG 3 cut(s) 16, 26, 317
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 1 cut(s) 344
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 3 cut(s) 46, 109, 554
Hpy188I TCNGA 2 cut(s) 153, 543
Hpy188III TCNNGA 3 cut(s) 179, 263, 399
Hpy8I GTNNAC 3 cut(s) 46, 109, 554
Hpy99I CGWCG 1 cut(s) 454
HpyAV CCTTC 2 cut(s) 93, 215
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4IV ACGT 2 cut(s) 161, 547
HpyCH4V TGCA 3 cut(s) 54, 122, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 150, 505
HpySE526I ACGT 2 cut(s) 161, 547
Hsp92II CATG 3 cut(s) 16, 26, 317
HspAI GCGC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 8 cut(s) 72, 169, 184, 185, 244, 276, 388, 472
Lsp1109I GCAGC 2 cut(s) 246, 306
LweI GCATC 1 cut(s) 242
MaeI CTAG 3 cut(s) 206, 390, 399
MaeII ACGT 2 cut(s) 161, 547
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 7 cut(s) 108, 261, 281, 300, 398, 401, 530
MflI RGATCY 1 cut(s) 145
MluCI AATT 1 cut(s) 402
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 3 cut(s) 159, 579, 585
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 264
MspI CCGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeI CATATG 1 cut(s) 135
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 16, 26, 317
NlaIV GGNNCC 2 cut(s) 147, 169
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PkrI GCNGC 2 cut(s) 236, 321
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 202
Psp1406I AACGTT 1 cut(s) 547
Psp5II RGGWCCY 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 147, 169
PspPI GGNCC 2 cut(s) 186, 202
PspPPI RGGWCCY 1 cut(s) 202
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 3 cut(s) 226, 526, 555
RsaNI GTAC 3 cut(s) 225, 525, 554
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 235, 320
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 2 cut(s) 186, 202
SchI GAGTC 1 cut(s) 353
SetI ASST 9 cut(s) 85, 164, 207, 226, 321, 367, 550, 559, 619
SfaNI GCATC 1 cut(s) 242
SinI GGWCC 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 1 cut(s) 402
SsiI CCGC 1 cut(s) 572
SspMI CTAG 3 cut(s) 206, 390, 399
TaaI ACNGT 1 cut(s) 516
TaiI ACGT 2 cut(s) 164, 550
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 402
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 1 cut(s) 97
TseI GCWGC 2 cut(s) 234, 319
TspDTI ATGAA 3 cut(s) 39, 152, 282
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 402
XbaI TCTAGA 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 3 cut(s) 206, 390, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.