Rmu_sc0000117.1_g000008
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000117.1
OG0000240
Physical Location & Seq
Forward (+)
54375 .. 55793
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000117.1_g000008.1.cds

Sequence Viewer

Length: 747 bp
atgggaaagacgaaatccaccggtactgaaaatgaggcatctggaaaaccaaaagccacatggcctgatgaggtagtagctatattttgtgatatagctgttaaggaagtggccaagggaaacagacctggtacacattttgataaaaagggatggtcaaatgttatcaaggcctttaaggagttaacgggaagggattatgataaaaggcaattgaaaaataagtgggattcacttaaaaatgattggaaattgtggagttcactattgcataaggaaactggtattggatgggatccgactaggaagactgtcgatgcacctgctgagtggcaaggtgaaccaagagggaaaaagagaaaaactgtggagtaccaaattgggcctaataaagaaagaaaagataaaggagttatgggagggccaaaggggaagaaagaaaaggtgggaggtgcagctcaattgtctaaacaaattgatagtcttgttgaagtattcgagagtaggagtacagctacatctgtccgtaatactagtacggaacaaggaactagtattcaggaggtgatgagagttgttgcaactttaccaggagcagaaactggagcagaaactggtaccaagctatggtggtttgcaacagagttgttttgctctcaagagaagcgagagatgttttctattatgacagatgatgatctcaagctccagtttctgattcttaatcagaaaaaagctgaaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

248

Amino Acids

27.81

Weight (kDa)

9.36

Isoelectric Point (pI)

24.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
Acc65I GGTACC 1 cut(s) 617
AccB1I GGYRCC 1 cut(s) 617
AccB7I CCANNNNNTGG 1 cut(s) 627
AclWI GGATC 2 cut(s) 290, 303
AcoI YGGCCR 1 cut(s) 111
AfaI GTAC 6 cut(s) 25, 133, 374, 511, 538, 619
AfiI CCNNNNNNNGG 1 cut(s) 627
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 2 cut(s) 217, 491
AhlI ACTAGT 2 cut(s) 533, 551
AjnI CCWGG 2 cut(s) 127, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 7 cut(s) 80, 98, 458, 515, 625, 706, 737
AluI AGCT 7 cut(s) 80, 98, 458, 515, 625, 706, 737
AlwI GGATC 2 cut(s) 290, 303
AlwNI CAGNNNCTG 3 cut(s) 602, 614, 715
AoxI GGCC 5 cut(s) 62, 111, 171, 383, 422
ApeKI GCWGC 1 cut(s) 455
ArsI GACNNNNNNTTYG 2 cut(s) 466, 498
AsiGI ACCGGT 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 617
AspS9I GGNCC 2 cut(s) 383, 422
AsuHPI GGTGA 2 cut(s) 350, 577
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 617
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 467
BccI CCATC 2 cut(s) 147, 285
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 129, 591
BcuI ACTAGT 2 cut(s) 533, 551
BfaI CTAG 3 cut(s) 303, 534, 552
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 129, 591
BmgT120I GGNCC 2 cut(s) 383, 422
BmiI GGNNCC 2 cut(s) 297, 619
BmrFI CCNGG 2 cut(s) 129, 591
BmsI GCATC 2 cut(s) 47, 307
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 2 cut(s) 624, 692
BpuEI CTTGAG 2 cut(s) 642, 686
BsaBI GATNNNNATC 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 20
Bsc4I CCNNNNNNNGG 1 cut(s) 627
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 4 cut(s) 286, 607, 619, 709
Bse8I GATNNNNATC 1 cut(s) 696
BseBI CCWGG 2 cut(s) 129, 591
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 158, 296
BseJI GATNNNNATC 1 cut(s) 696
BseLI CCNNNNNNNGG 1 cut(s) 627
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 4 cut(s) 286, 607, 619, 709
BseXI GCAGC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 5 cut(s) 64, 113, 173, 385, 424
BshNI GGYRCC 1 cut(s) 617
BshTI ACCGGT 1 cut(s) 20
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 627
BsnI GGCC 5 cut(s) 64, 113, 173, 385, 424
Bsp143I GATC 2 cut(s) 295, 697
BspANI GGCC 5 cut(s) 64, 113, 173, 385, 424
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 2 cut(s) 297, 619
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 2 cut(s) 290, 303
BspT107I GGYRCC 1 cut(s) 617
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 4 cut(s) 286, 607, 619, 709
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 295, 697
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 129, 591
Bst4CI ACNGT 2 cut(s) 313, 367
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 158, 296
BstKTI GATC 2 cut(s) 298, 700
BstMBI GATC 2 cut(s) 295, 697
BstNI CCWGG 2 cut(s) 129, 591
BstSCI CCNGG 2 cut(s) 127, 589
BstV1I GCAGC 1 cut(s) 467
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuRI GGCC 5 cut(s) 64, 113, 173, 385, 424
BtsCI GGATG 2 cut(s) 158, 296
BveI ACCTGC 1 cut(s) 331
CaiI CAGNNNCTG 3 cut(s) 602, 614, 715
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 383, 422
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 6 cut(s) 24, 132, 373, 510, 537, 618
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 1 cut(s) 60
CviQI GTAC 6 cut(s) 24, 132, 373, 510, 537, 618
DdeI CTNAG 1 cut(s) 327
DpnI GATC 2 cut(s) 297, 699
DpnII GATC 2 cut(s) 295, 697
EaeI YGGCCR 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 127, 589
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 63
FaiI YATR 8 cut(s) 61, 83, 95, 201, 273, 416, 628, 686
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 2 cut(s) 165, 303
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 3 cut(s) 303, 534, 552
GluI GCNGC 1 cut(s) 456
GsuI CTGGAG 2 cut(s) 624, 692
HaeIII GGCC 5 cut(s) 64, 113, 173, 385, 424
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 63
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 2 cut(s) 230, 718
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 350, 577
Hpy166II GTNNAC 4 cut(s) 134, 186, 263, 341
Hpy188I TCNGA 3 cut(s) 300, 717, 729
Hpy188III TCNNGA 4 cut(s) 42, 499, 560, 659
Hpy8I GTNNAC 4 cut(s) 134, 186, 263, 341
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 313, 367
HpyCH4V TGCA 5 cut(s) 271, 320, 455, 581, 638
HpyF3I CTNAG 1 cut(s) 327
Hsp92II CATG 1 cut(s) 63
KpnI GGTACC 1 cut(s) 621
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 295, 697
LmnI GCTCC 3 cut(s) 593, 605, 711
Lsp1109I GCAGC 1 cut(s) 467
LweI GCATC 2 cut(s) 47, 307
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 3 cut(s) 303, 534, 552
MalI GATC 2 cut(s) 297, 699
MboI GATC 2 cut(s) 295, 697
MboII GAAGA 2 cut(s) 319, 445
MfeI CAATTG 2 cut(s) 212, 461
MflI RGATCY 1 cut(s) 295
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 6 cut(s) 212, 251, 378, 461, 474, 742
MluNI TGGCCA 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 6 cut(s) 28, 64, 341, 413, 443, 556
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 5 cut(s) 102, 177, 185, 237, 723
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 129, 591
MunI CAATTG 2 cut(s) 212, 461
MvaI CCWGG 2 cut(s) 129, 591
NdeII GATC 2 cut(s) 295, 697
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 2 cut(s) 297, 619
PaqCI CACCTGC 1 cut(s) 331
PceI AGGCCT 1 cut(s) 173
PfeI GAWTC 2 cut(s) 230, 718
PflMI CCANNNNNTGG 1 cut(s) 627
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 1 cut(s) 457
Psp6I CCWGG 2 cut(s) 127, 589
PspGI CCWGG 2 cut(s) 127, 589
PspN4I GGNNCC 2 cut(s) 297, 619
PspPI GGNCC 2 cut(s) 383, 422
PstNI CAGNNNCTG 3 cut(s) 602, 614, 715
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 6 cut(s) 25, 133, 374, 511, 538, 619
RsaNI GTAC 6 cut(s) 24, 132, 373, 510, 537, 618
SaqAI TTAA 5 cut(s) 102, 177, 185, 237, 723
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 2 cut(s) 295, 697
Sau96I GGNCC 2 cut(s) 383, 422
ScrFI CCNGG 2 cut(s) 129, 591
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 2 cut(s) 47, 307
SmlI CTYRAG 2 cut(s) 657, 701
SmoI CTYRAG 2 cut(s) 657, 701
SpeI ACTAGT 2 cut(s) 533, 551
Sse9I AATT 6 cut(s) 212, 251, 378, 461, 474, 742
SseBI AGGCCT 1 cut(s) 173
SspMI CTAG 3 cut(s) 303, 534, 552
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 2 cut(s) 127, 589
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 313, 367
TaqI TCGA 2 cut(s) 315, 498
TasI AATT 6 cut(s) 212, 251, 378, 461, 474, 742
TatI WGTACW 1 cut(s) 509
TfiI GAWTC 2 cut(s) 230, 718
Tru1I TTAA 5 cut(s) 102, 177, 185, 237, 723
Tru9I TTAA 5 cut(s) 102, 177, 185, 237, 723
TseI GCWGC 1 cut(s) 455
TspGWI ACGGA 2 cut(s) 515, 554
Van91I CCANNNNNTGG 1 cut(s) 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XspI CTAG 3 cut(s) 303, 534, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.