Prupe.5G207000_v2.0.a1
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000240
Physical Location & Seq
Forward (+)
16520774 .. 16523606
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G207000.1

Sequence Viewer

Length: 864 bp
CTGCTCTTCTCACTATTCTTCTTCTTCCTCCCCCTGCATCTCAAAATTCCATCTCAATCAAGGACGTTAATTGCCAACAACAATCAGCTACTCATCAAGCTTTCCCTTTCTTTGGGCAAACTGACTTTGGATACAAAGAAGACCAAGCAGCGGCTGTCATACCTGTGGGATGCACTCAAAATTGAGTGGAAATTGTGGAAAGAACGCGTAGGCAAAGAAACTGGTCTAGGGTGGAATTCGAGCAAAGGTACTGTTGATGCATCTGATGAGTGGTGGAATAATAAAATTCAGATAAATGCTGAATATGCAAAGTTACGTAAAAAAGGCATTAATCCTGAGATGGAGGAGAAGCTAGATAGGATGTTCATGAATACCACGGCCACTGGTGAACATGCTTGGGCACCTTCATGTGGTATACTCCCATCAGAAACTGAAGAGGCAACCATGGGTGATGTTATTCCACTCGAAGGAAGTGATGACTCAGATGAAATAATTCAAGCTATCAAAAATGCTACAAAGAAAGGGAAAAGGAGAGCACCTGAACAATTGAATAAAAAACAGCAAGATAAGAAAGGAAGAAAAGTTGGAGGTGCTGAAAAACTAGCTGGCCAAATTGACCGCCTTGTTGGTGTAGTTGAGAGTAGGAGCACAGCAACATCATTGATGATGAAAATGCAACTGGGCAGTAGTATTCCTGAAGTGATGGAAGTTGTATCATCTCTACCTGGATGTGAACCTACTAGCACTTTGTGGATGTTTGCGACTCGATTATTTTTGAATCAAGAGAAGCGAGAGATGTTCTCTACCATGAAGACTCCTAATGTCAAGCTTGCATGGCTAACTTATGAATTTAACAACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

288

Amino Acids

32.55

Weight (kDa)

9.31

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AccI GTMKAC 1 cut(s) 415
AccII CGCG 1 cut(s) 207
AciI CCGC 2 cut(s) 151, 619
AcoI YGGCCR 2 cut(s) 378, 607
AcsI RAATTY 4 cut(s) 45, 235, 285, 848
AcuI CTGAAG 2 cut(s) 453, 717
AdeI CACNNNGTG 1 cut(s) 750
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 4 cut(s) 112, 150, 410, 467
AflIII ACRYGT 1 cut(s) 205
AgsI TTSAA 3 cut(s) 497, 550, 778
AjnI CCWGG 1 cut(s) 724
AluBI AGCT 6 cut(s) 88, 100, 352, 500, 605, 829
AluI AGCT 6 cut(s) 88, 100, 352, 500, 605, 829
Alw21I GWGCWC 2 cut(s) 538, 650
AlwNI CAGNNNCTG 2 cut(s) 154, 431
AoxI GGCC 2 cut(s) 378, 607
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 4 cut(s) 45, 235, 285, 848
AseI ATTAAT 1 cut(s) 330
Asp700I GAANNNNTTC 1 cut(s) 492
AsuHPI GGTGA 2 cut(s) 398, 461
BaeGI GKGCMC 1 cut(s) 403
BalI TGGCCA 1 cut(s) 609
BanI GGYRCC 1 cut(s) 400
BbsI GAAGAC 2 cut(s) 146, 818
Bbv12I GWGCWC 2 cut(s) 538, 650
BbvI GCAGC 1 cut(s) 160
BccI CCATC 4 cut(s) 58, 334, 430, 697
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 1 cut(s) 726
BciVI GTATCC 1 cut(s) 124
BfaI CTAG 4 cut(s) 227, 353, 602, 741
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 2 cut(s) 149, 152
BlsI GCNGC 2 cut(s) 150, 153
Bme1390I CCNGG 1 cut(s) 726
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 1 cut(s) 726
BmrI ACTGGG 1 cut(s) 689
BmsI GCATC 4 cut(s) 46, 160, 247, 269
BmuI ACTGGG 1 cut(s) 689
BpiI GAAGAC 2 cut(s) 146, 818
BplI GAGNNNNNCTC 2 cut(s) 785, 817
BsaAI YACGTR 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 375, 444
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 150, 410, 467
Bse1I ACTGG 3 cut(s) 226, 388, 684
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 2 cut(s) 375, 444
BseGI GGATG 4 cut(s) 175, 366, 734, 759
BseLI CCNNNNNNNGG 4 cut(s) 112, 150, 410, 467
BseMII CTCAG 2 cut(s) 327, 495
BseNI ACTGG 3 cut(s) 226, 388, 684
BseRI GAGGAG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 380, 609
BshNI GGYRCC 1 cut(s) 400
BsiHKAI GWGCWC 2 cut(s) 538, 650
BslI CCNNNNNNNGG 4 cut(s) 112, 150, 410, 467
BsnI GGCC 2 cut(s) 380, 609
Bsp1286I GDGCHC 3 cut(s) 403, 538, 650
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 151, 619
BspANI GGCC 2 cut(s) 380, 609
BspCNI CTCAG 2 cut(s) 328, 494
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 400
BsrI ACTGG 3 cut(s) 226, 388, 684
BssECI CCNNGG 2 cut(s) 375, 444
BssNAI GTATAC 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 444
Bst1107I GTATAC 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 2 cut(s) 11, 429
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 607, 831
BstDEI CTNAG 2 cut(s) 336, 481
BstDSI CCRYGG 2 cut(s) 375, 444
BstF5I GGATG 4 cut(s) 175, 366, 734, 759
BstFNI CGCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 305, 835
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 1 cut(s) 395
BstSCI CCNGG 1 cut(s) 724
BstSLI GKGCMC 1 cut(s) 403
BstSNI TACGTA 1 cut(s) 317
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 2 cut(s) 146, 818
BstZ17I GTATAC 1 cut(s) 416
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 380, 609
BtgI CCRYGG 2 cut(s) 375, 444
BtsCI GGATG 4 cut(s) 175, 366, 734, 759
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 607, 831
CaiI CAGNNNCTG 2 cut(s) 154, 431
CciI TCATGA 1 cut(s) 366
Csp6I GTAC 1 cut(s) 249
CviAII CATG 6 cut(s) 367, 392, 408, 445, 808, 834
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 2 cut(s) 336, 481
DraIII CACNNNGTG 1 cut(s) 750
EaeI YGGCCR 2 cut(s) 378, 607
Eam1104I CTCTTC 2 cut(s) 11, 429
EarI CTCTTC 2 cut(s) 11, 429
Eco105I TACGTA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 453, 717
EcoRI GAATTC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 6 cut(s) 370, 395, 411, 448, 811, 837
FatI CATG 6 cut(s) 366, 391, 407, 444, 807, 833
FblI GTMKAC 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 149, 152
FokI GGATG 4 cut(s) 182, 373, 741, 766
Fsp4HI GCNGC 2 cut(s) 149, 152
FspBI CTAG 4 cut(s) 227, 353, 602, 741
GluI GCNGC 2 cut(s) 149, 152
HaeIII GGCC 2 cut(s) 380, 609
Hin1II CATG 6 cut(s) 370, 395, 411, 448, 811, 837
HindIII AAGCTT 2 cut(s) 98, 827
HinfI GANTC 4 cut(s) 479, 763, 778, 814
HphI GGTGA 2 cut(s) 398, 461
Hpy166II GTNNAC 3 cut(s) 389, 416, 734
Hpy188I TCNGA 4 cut(s) 265, 291, 427, 484
Hpy188III TCNNGA 4 cut(s) 335, 367, 695, 782
Hpy8I GTNNAC 3 cut(s) 389, 416, 734
HpyAV CCTTC 2 cut(s) 414, 461
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 65, 316
HpyCH4V TGCA 6 cut(s) 37, 173, 260, 308, 676, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 835
HpyF3I CTNAG 2 cut(s) 336, 481
HpySE526I ACGT 2 cut(s) 65, 316
Hsp92II CATG 6 cut(s) 370, 395, 411, 448, 811, 837
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 645
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 4 cut(s) 46, 160, 247, 269
MaeI CTAG 4 cut(s) 227, 353, 602, 741
MaeII ACGT 2 cut(s) 65, 316
MaeIII GTNAC 1 cut(s) 312
MboII GAAGA 7 cut(s) 10, 13, 16, 151, 446, 588, 823
MfeI CAATTG 1 cut(s) 545
MhlI GDGCHC 3 cut(s) 403, 538, 650
MlsI TGGCCA 1 cut(s) 609
MluI ACGCGT 1 cut(s) 205
MluNI TGGCCA 1 cut(s) 609
MlyI GAGTC 3 cut(s) 473, 757, 808
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 4 cut(s) 38, 337, 430, 581
Mox20I TGGCCA 1 cut(s) 609
Mph1103I ATGCAT 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 492
MscI TGGCCA 1 cut(s) 609
MseI TTAA 3 cut(s) 68, 330, 852
MslI CAYNNNNRTG 2 cut(s) 163, 406
Msp20I TGGCCA 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 726
MunI CAATTG 1 cut(s) 545
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 305, 835
NcoI CCATGG 1 cut(s) 444
NlaIII CATG 6 cut(s) 370, 395, 411, 448, 811, 837
NlaIV GGNNCC 1 cut(s) 402
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 1 cut(s) 395
PagI TCATGA 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 1 cut(s) 778
PkrI GCNGC 2 cut(s) 150, 153
PleI GAGTC 3 cut(s) 473, 757, 808
PpsI GAGTC 3 cut(s) 473, 757, 808
Ppu21I YACGTR 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 1 cut(s) 402
PstNI CAGNNNCTG 2 cut(s) 154, 431
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 2 cut(s) 163, 406
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 3 cut(s) 68, 330, 852
SatI GCNGC 2 cut(s) 149, 152
SchI GAGTC 3 cut(s) 473, 757, 808
ScrFI CCNGG 1 cut(s) 726
SduI GDGCHC 3 cut(s) 403, 538, 650
SfaNI GCATC 4 cut(s) 46, 160, 247, 269
SmiMI CAYNNNNRTG 2 cut(s) 163, 406
SnaBI TACGTA 1 cut(s) 317
SsiI CCGC 2 cut(s) 151, 619
SspMI CTAG 4 cut(s) 227, 353, 602, 741
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 68, 319
TaqI TCGA 3 cut(s) 239, 465, 766
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 1 cut(s) 778
Tru1I TTAA 3 cut(s) 68, 330, 852
Tru9I TTAA 3 cut(s) 68, 330, 852
TscAI CASTG 1 cut(s) 388
TseI GCWGC 1 cut(s) 148
TspDTI ATGAA 7 cut(s) 355, 383, 396, 501, 683, 824, 861
TspRI CASTG 1 cut(s) 388
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 4 cut(s) 45, 235, 285, 848
XceI RCATGY 1 cut(s) 395
XmiI GTMKAC 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 4 cut(s) 227, 353, 602, 741
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.