FvH4_3g29921
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000240
Physical Location & Seq
Reverse (-)
23024255 .. 23025125
871 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29921.t1

Sequence Viewer

Length: 405 bp
ATGTTGGTGCATATACTTTATAATTCTTTAGTAAACATGGGAAGAAAGAAGATTACTGGTGACAATTGCATTGAGATGATCAACCTTGAAAATGGGCAAAGTGGAACTAAATCAGCTACCTGGAATCCTCAAACCGTAGCTATATTTTGCAACTTATGTATCAAAGAAGTTGGGAAAGGACAAAGGCCTGAATGGAAATTATGGAAAGATCTGATTGGGAAGGAAACTGGCCTTGGTTGGAATCCCACTAAAAATACTGTTGATGCATCAGATGAATGGTGGAGGAATAAAATCCAGATAAATCCACAATATGCGAAATTGCGTGTTCGAGGCATCAATCCTGATATGGAGGCGAAGTTGGATATGATGTTTAATGGCGCTGTAGCTACCGGTAAATATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

135

Amino Acids

15.17

Weight (kDa)

9.2

Isoelectric Point (pI)

17.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 21
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 3 cut(s) 116, 140, 386
AluI AGCT 3 cut(s) 116, 140, 386
AoxI GGCC 2 cut(s) 185, 229
AsiGI ACCGGT 1 cut(s) 389
AspLEI GCGC 1 cut(s) 380
AsuHPI GGTGA 1 cut(s) 71
BaeI ACNNNNGTAYC 2 cut(s) 142, 175
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 381
BglII AGATCT 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 3 cut(s) 253, 275, 342
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 2 cut(s) 61, 232
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 232
BseNI ACTGG 2 cut(s) 61, 232
BshFI GGCC 2 cut(s) 187, 231
BshTI ACCGGT 1 cut(s) 389
BsiSI CCGG 1 cut(s) 390
BsnI GGCC 2 cut(s) 187, 231
Bsp143I GATC 2 cut(s) 78, 208
BspANI GGCC 2 cut(s) 187, 231
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 2 cut(s) 61, 232
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 2 cut(s) 78, 208
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 136, 259
BstDEI CTNAG 1 cut(s) 402
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 2 cut(s) 81, 211
BstMBI GATC 2 cut(s) 78, 208
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstSFI CTRYAG 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuRI GGCC 2 cut(s) 187, 231
CfoI GCGC 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 389
CspAI ACCGGT 1 cut(s) 389
CviAII CATG 1 cut(s) 37
CviJI RGCY 5 cut(s) 116, 140, 187, 231, 386
CviKI_1 RGCY 5 cut(s) 116, 140, 187, 231, 386
DdeI CTNAG 1 cut(s) 402
DpnI GATC 2 cut(s) 80, 210
DpnII GATC 2 cut(s) 78, 208
Eco130I CCWWGG 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 187
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 232
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 40
FatI CATG 1 cut(s) 36
FbaI TGATCA 1 cut(s) 78
GlaI GCGC 1 cut(s) 379
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 2 cut(s) 187, 231
HapII CCGG 1 cut(s) 390
HhaI GCGC 1 cut(s) 380
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HinfI GANTC 2 cut(s) 124, 241
HpaII CCGG 1 cut(s) 390
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 213, 271
Hpy188III TCNNGA 2 cut(s) 295, 341
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 2 cut(s) 136, 259
HpyCH4V TGCA 4 cut(s) 10, 69, 150, 266
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 78, 208
LpnPI CCDG 7 cut(s) 42, 106, 133, 201, 213, 308, 354
LweI GCATC 3 cut(s) 253, 275, 342
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 80, 210
MboI GATC 2 cut(s) 78, 208
MboII GAAGA 2 cut(s) 54, 61
MfeI CAATTG 1 cut(s) 64
MflI RGATCY 1 cut(s) 208
MluCI AATT 4 cut(s) 22, 64, 197, 317
MmeI TCCRAC 2 cut(s) 218, 339
MnlI CCTC 4 cut(s) 138, 276, 323, 343
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 121
MunI CAATTG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 121
NdeII GATC 2 cut(s) 78, 208
NlaIII CATG 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 268
PceI AGGCCT 1 cut(s) 187
PfeI GAWTC 2 cut(s) 124, 241
PinAI ACCGGT 1 cut(s) 389
PsiI TTATAA 1 cut(s) 21
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 372
Sau3AI GATC 2 cut(s) 78, 208
ScrFI CCNGG 1 cut(s) 121
SetI ASST 5 cut(s) 87, 118, 122, 142, 388
SfaNI GCATC 3 cut(s) 253, 275, 342
SfcI CTRYAG 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 4 cut(s) 22, 64, 197, 317
SseBI AGGCCT 1 cut(s) 187
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 136, 259
TaqI TCGA 1 cut(s) 328
TasI AATT 4 cut(s) 22, 64, 197, 317
TfiI GAWTC 2 cut(s) 124, 241
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.