pycom04g16130
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000240
Physical Location & Seq
Reverse (-)
18889787 .. 18890770
984 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16130.1

Sequence Viewer

Length: 825 bp
ATGGCAAAGAAGGGGGCATCTTCGTCAAATCCTGTAGCTAAATGGAATGCGCACAATATATCAATATTTTGTGATCTTTGCATCAAGGAGGTTGAGGCCGGACATCGTCCGGGCACTCACTTTGACAAAGAAGAATATGCAAATATTAGAGCTAACTTCAAGGCAGAGACAGGGCATGATTATGAAAAAAAGCAACTGAAAAATAAGTGGGATGCACTTAAAAATGAGTGGAAGTTGTGGAAAGAATTAATAAACAAAGAATATGGAAAATTGCGAAAAAAAGGCATTAGTCCTGAGATGGAGGACAAGTTAGATAGGATGTTCTTGAGTACAATTGCTACCGGTGAACATGCCTGGGCACCTTTATCTGGAGTACTATCACCAGAGTCAAGAAAGGAATCTGTAGGACAAATTGATTCATATGATGAGGAAGAAACTGAGACTATGCAGGATCTAAGGCAAGCAAGTAGGAAGGGAAAAAAAAGAGCGGCTAACCAAGGAGAATTGCAAAAGAAGAAGGTTGATAAGAAAGGGAAAAAAATTGGAGGTGCTGCAAAACTTTGTGGTCAAATTGACCGTCTTGTTGAAGCTTATGAAACTAGGAGTTCTGCAAACTCATTGATGAGGTCGCTGCATATAGGTAGTAGTGTTCCGGAAGTGTTAGCGGTTGTTGCACAATTGCCTGGTTGTGAGCCACCTAGCGAGTTATGGTTGTTTGCTACATGTTTATTTTATTCTGCAGAGAAGCGAGAGGTGTTTACTACGATACAAGATCCTGAAGTCCAGCTGACTTGGTTGAAATATATGTTCAACAAAGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

275

Amino Acids

31.11

Weight (kDa)

8.76

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 14 - 86 4.4e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 488
AccIII TCCGGA 1 cut(s) 652
AciI CCGC 2 cut(s) 488, 665
AclWI GGATC 2 cut(s) 459, 767
AcuI CTGAAG 1 cut(s) 798
AfaI GTAC 2 cut(s) 331, 375
AfiI CCNNNNNNNGG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 722
AgeI ACCGGT 1 cut(s) 341
AgsI TTSAA 4 cut(s) 160, 587, 799, 811
AjnI CCWGG 2 cut(s) 353, 682
AluBI AGCT 4 cut(s) 38, 152, 590, 787
AluI AGCT 4 cut(s) 38, 152, 590, 787
Alw26I GTCTC 2 cut(s) 161, 434
AlwI GGATC 2 cut(s) 459, 767
Aor13HI TCCGGA 1 cut(s) 652
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 2 cut(s) 551, 631
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
AseI ATTAAT 1 cut(s) 248
AsiGI ACCGGT 1 cut(s) 341
AspLEI GCGC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 356, 372
BaeGI GKGCMC 2 cut(s) 116, 361
BanI GGYRCC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 538, 618
BccI CCATC 1 cut(s) 292
BciT130I CCWGG 2 cut(s) 355, 684
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 161, 434
BfaI CTAG 2 cut(s) 600, 699
BfmI CTRYAG 3 cut(s) 33, 402, 738
BisI GCNGC 3 cut(s) 489, 552, 632
BlsI GCNGC 3 cut(s) 490, 553, 633
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 3 cut(s) 111, 355, 684
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 3 cut(s) 111, 355, 684
BmsI GCATC 3 cut(s) 26, 90, 202
BpmI CTGGAG 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 354, 496
BsaWI WCCGGW 2 cut(s) 341, 652
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse118I RCCGGY 1 cut(s) 341
BseAI TCCGGA 1 cut(s) 652
BseBI CCWGG 2 cut(s) 355, 684
BseDI CCNNGG 2 cut(s) 354, 496
BseGI GGATG 2 cut(s) 217, 324
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMII CTCAG 2 cut(s) 285, 429
BseSI GKGCMC 2 cut(s) 116, 361
BseXI GCAGC 2 cut(s) 538, 618
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 358
BshTI ACCGGT 1 cut(s) 341
BsiSI CCGG 4 cut(s) 99, 110, 342, 653
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 2 cut(s) 161, 434
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 116, 361
Bsp13I TCCGGA 1 cut(s) 652
Bsp143I GATC 3 cut(s) 73, 451, 772
BspACI CCGC 2 cut(s) 488, 665
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 286, 430
BspEI TCCGGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 360
BspMAI CTGCAG 1 cut(s) 742
BspPI GGATC 2 cut(s) 459, 767
BspT107I GGYRCC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 488
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 354, 496
BssMI GATC 3 cut(s) 73, 451, 772
BssT1I CCWWGG 1 cut(s) 496
Bst2UI CCWGG 2 cut(s) 355, 684
Bst4CI ACNGT 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 294, 438, 455
BstF5I GGATG 2 cut(s) 217, 324
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 3 cut(s) 76, 454, 775
BstMAI GTCTC 2 cut(s) 161, 434
BstMBI GATC 3 cut(s) 73, 451, 772
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstNI CCWGG 2 cut(s) 355, 684
BstNSI RCATGY 2 cut(s) 353, 726
BstSCI CCNGG 3 cut(s) 109, 353, 682
BstSFI CTRYAG 3 cut(s) 33, 402, 738
BstSLI GKGCMC 2 cut(s) 116, 361
BstV1I GCAGC 2 cut(s) 538, 618
BstX2I RGATCY 2 cut(s) 451, 772
BstYI RGATCY 2 cut(s) 451, 772
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 217, 324
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 341
Csp6I GTAC 2 cut(s) 330, 374
CspAI ACCGGT 1 cut(s) 341
CviAII CATG 3 cut(s) 176, 350, 723
CviJI RGCY 7 cut(s) 38, 98, 152, 491, 590, 694, 787
CviKI_1 RGCY 7 cut(s) 38, 98, 152, 491, 590, 694, 787
CviQI GTAC 2 cut(s) 330, 374
DdeI CTNAG 3 cut(s) 294, 438, 455
DpnI GATC 3 cut(s) 75, 453, 774
DpnII GATC 3 cut(s) 73, 451, 772
Eco130I CCWWGG 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 798
EcoRII CCWGG 2 cut(s) 353, 682
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 3 cut(s) 179, 353, 726
FatI CATG 3 cut(s) 175, 349, 722
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 3 cut(s) 489, 552, 632
FokI GGATG 2 cut(s) 224, 331
Fsp4HI GCNGC 3 cut(s) 489, 552, 632
FspAI RTGCGCAY 1 cut(s) 51
FspBI CTAG 2 cut(s) 600, 699
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 1 cut(s) 51
GluI GCNGC 3 cut(s) 489, 552, 632
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 98
HapII CCGG 4 cut(s) 99, 110, 342, 653
HhaI GCGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 179, 353, 726
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 588
HinfI GANTC 3 cut(s) 386, 398, 416
HpaII CCGG 4 cut(s) 99, 110, 342, 653
HphI GGTGA 2 cut(s) 356, 372
Hpy166II GTNNAC 2 cut(s) 347, 759
Hpy188III TCNNGA 6 cut(s) 293, 325, 369, 390, 653, 776
Hpy8I GTNNAC 2 cut(s) 347, 759
HpyAV CCTTC 3 cut(s) 4, 466, 511
HpyCH4III ACNGT 1 cut(s) 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpyF3I CTNAG 3 cut(s) 294, 438, 455
Hsp92II CATG 3 cut(s) 179, 353, 726
HspAI GCGC 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 652
Kzo9I GATC 3 cut(s) 73, 451, 772
Lsp1109I GCAGC 2 cut(s) 538, 618
LweI GCATC 3 cut(s) 26, 90, 202
MaeI CTAG 2 cut(s) 600, 699
MalI GATC 3 cut(s) 75, 453, 774
MbiI CCGCTC 1 cut(s) 488
MboI GATC 3 cut(s) 73, 451, 772
MboII GAAGA 4 cut(s) 12, 143, 443, 526
MfeI CAATTG 2 cut(s) 333, 677
MflI RGATCY 2 cut(s) 451, 772
MhlI GDGCHC 2 cut(s) 116, 361
MluCI AATT 8 cut(s) 245, 269, 333, 411, 503, 540, 570, 677
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 7 cut(s) 82, 88, 295, 421, 539, 618, 745
MroI TCCGGA 1 cut(s) 652
MseI TTAA 2 cut(s) 219, 248
MslI CAYNNNNRTG 1 cut(s) 180
MspA1I CMGCKG 1 cut(s) 787
MspI CCGG 4 cut(s) 99, 110, 342, 653
MspR9I CCNGG 3 cut(s) 111, 355, 684
MunI CAATTG 2 cut(s) 333, 677
Mva1269I GAATGC 1 cut(s) 52
MvaI CCWGG 2 cut(s) 355, 684
MwoI GCNNNNNNNGC 1 cut(s) 671
NciI CCSGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 421
NdeII GATC 3 cut(s) 73, 451, 772
NlaIII CATG 3 cut(s) 179, 353, 726
NlaIV GGNNCC 1 cut(s) 360
NsbI TGCGCA 1 cut(s) 51
NspI RCATGY 2 cut(s) 353, 726
PciI ACATGT 1 cut(s) 722
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 398, 416
PflFI GACNNNGTC 1 cut(s) 105
PinAI ACCGGT 1 cut(s) 341
PkrI GCNGC 3 cut(s) 490, 553, 633
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PscI ACATGT 1 cut(s) 722
PshBI ATTAAT 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 353, 682
PspGI CCWGG 2 cut(s) 353, 682
PspN4I GGNNCC 1 cut(s) 360
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 2 cut(s) 451, 772
PsyI GACNNNGTC 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 787
RsaI GTAC 2 cut(s) 331, 375
RsaNI GTAC 2 cut(s) 330, 374
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 2 cut(s) 219, 248
SatI GCNGC 3 cut(s) 489, 552, 632
Sau3AI GATC 3 cut(s) 73, 451, 772
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 3 cut(s) 111, 355, 684
SduI GDGCHC 2 cut(s) 116, 361
SfaNI GCATC 3 cut(s) 26, 90, 202
SfcI CTRYAG 3 cut(s) 33, 402, 738
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 8 cut(s) 245, 269, 333, 411, 503, 540, 570, 677
SsiI CCGC 2 cut(s) 488, 665
SspI AATATT 2 cut(s) 66, 145
SspMI CTAG 2 cut(s) 600, 699
StyD4I CCNGG 3 cut(s) 109, 353, 682
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 1 cut(s) 578
TasI AATT 8 cut(s) 245, 269, 333, 411, 503, 540, 570, 677
TatI WGTACW 2 cut(s) 329, 373
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 2 cut(s) 398, 416
Tru1I TTAA 2 cut(s) 219, 248
Tru9I TTAA 2 cut(s) 219, 248
TseI GCWGC 2 cut(s) 551, 631
TspDTI ATGAA 3 cut(s) 198, 408, 609
Tth111I GACNNNGTC 1 cut(s) 105
VspI ATTAAT 1 cut(s) 248
XceI RCATGY 2 cut(s) 353, 726
XspI CTAG 2 cut(s) 600, 699
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.