FvH4_7g08972
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000240
Physical Location & Seq
Forward (+)
8781894 .. 8782851
958 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08972.t1

Sequence Viewer

Length: 870 bp
ATGGCAAAAGCGTCGGCTGTTTGGAGCGAACAATTAGTACAAATATTTTGTGACTTGTGTATGAAGGAGGTGGACAATAATAACCGTCCAAACACTCATCTTAGTAAAGAGGGATATGAGAATGTGATACGTAATTTTGAAAAAGAAACGGGTAAACTATACACCAAAAAACAAATGAAAAACAAGTGGGATAACCTTAAAGAGCAGTGGAAACTATGGAAAGACTTGAAGGGTAAACAGACCGGTCTTGGTTGGGATCACAGGCTCCAGACTATAGATGCATCCGAAGATTGGTGGCGTGAGAAAATCAAGGAGAACAAGGAGTATGCTAAGTTACAGAAAAAAGGAATTACACCTGAGTTTGAAGACAAGTTGGATAAGTTATTTTCAGGAGTTGTAGCTACCGGTAGGTATGCTTGTACACCAGGTTCTTCACTACCTCAACCAACAAGTCCGGTTCACTGTGACAATGAACAAGACCTTGAAGAAAGTGGTGATTCATACGATATTCAGCCTACATCTACCCAAGGTATAAGAAAAAGAAGTGAGAGAATTGAAAAAGGTAAGGGAGTGGCTGCAAAAAAAGGGAAGGTGGGAGGTGCTGCTCTTCTGGCTACCAAAATTGATAGAATGTGTGAGGCAATTGAGAGCAGAAGTACCGCAACTTCAATTGCTAAGGGAGGCGCTAGCATCAAAGATGTGATGAAGGATGTTACTTCGTTGCCGGGTGGCGAGCCTTGTTCTCCATTGTGGTTCTTTGCCACGGATTTGTTTGTGTGCCAAGAGAAAAGAGAGATGTTTAGCACTATGGAAGATACTAACACGAGGTTGGCGTGGCTGCAATATGAGATGAGCAAATTAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

290

Amino Acids

32.83

Weight (kDa)

8.66

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 8 - 101 2.7e-21 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 660
AclWI GGATC 1 cut(s) 264
AfaI GTAC 3 cut(s) 39, 421, 658
AfiI CCNNNNNNNGG 1 cut(s) 291
AgeI ACCGGT 2 cut(s) 242, 404
AgsI TTSAA 6 cut(s) 140, 229, 365, 485, 557, 669
AjnI CCWGG 1 cut(s) 424
AluBI AGCT 1 cut(s) 401
AluI AGCT 1 cut(s) 401
AlwI GGATC 1 cut(s) 264
ApeKI GCWGC 3 cut(s) 575, 602, 838
AsiGI ACCGGT 2 cut(s) 242, 404
AspLEI GCGC 1 cut(s) 686
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 1 cut(s) 506
AsuNHI GCTAGC 1 cut(s) 686
BarI GAAGNNNNNNTAC 2 cut(s) 649, 681
BauI CACGAG 1 cut(s) 823
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 3 cut(s) 562, 589, 825
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 426
BcnI CCSGG 1 cut(s) 726
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 687
BisI GCNGC 3 cut(s) 576, 603, 839
BlsI GCNGC 3 cut(s) 577, 604, 840
Bme1390I CCNGG 2 cut(s) 426, 726
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 426, 726
BmsI GCATC 3 cut(s) 268, 290, 699
BmtI GCTAGC 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 675
BpuMI CCSGG 1 cut(s) 726
BsaAI YACGTR 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 526, 762
BsaWI WCCGGW 3 cut(s) 242, 404, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 2 cut(s) 242, 404
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 526, 762
BseGI GGATG 2 cut(s) 281, 715
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 348
BseXI GCAGC 3 cut(s) 562, 589, 825
BshTI ACCGGT 2 cut(s) 242, 404
BsiSI CCGG 4 cut(s) 243, 405, 455, 725
BslI CCNNNNNNNGG 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 419
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 1 cut(s) 660
BspCNI CTCAG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 266
BspOI GCTAGC 1 cut(s) 690
BspPI GGATC 1 cut(s) 264
BspQI GCTCTTC 1 cut(s) 612
BsrFI RCCGGY 2 cut(s) 242, 404
BsrGI TGTACA 1 cut(s) 419
BssAI RCCGGY 2 cut(s) 242, 404
BssECI CCNNGG 2 cut(s) 526, 762
BssMI GATC 1 cut(s) 256
BssSI CACGAG 1 cut(s) 823
BssT1I CCWWGG 1 cut(s) 526
Bst2BI CACGAG 1 cut(s) 823
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 86, 464
Bst6I CTCTTC 1 cut(s) 612
BstAUI TGTACA 1 cut(s) 419
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 688, 734
BstDEI CTNAG 4 cut(s) 101, 330, 357, 675
BstDSI CCRYGG 1 cut(s) 762
BstF5I GGATG 2 cut(s) 281, 715
BstH2I RGCGCY 1 cut(s) 687
BstHHI GCGC 1 cut(s) 686
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 611
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 2 cut(s) 424, 724
BstSFI CTRYAG 1 cut(s) 273
BstSNI TACGTA 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 562, 589, 825
BstV2I GAAGAC 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 762
BtsCI GGATG 2 cut(s) 281, 715
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 2 cut(s) 212, 460
Cac8I GCNNGC 2 cut(s) 688, 734
CfoI GCGC 1 cut(s) 686
Cfr10I RCCGGY 2 cut(s) 242, 404
CsiI ACCWGGT 1 cut(s) 424
Csp6I GTAC 3 cut(s) 38, 420, 657
CspAI ACCGGT 2 cut(s) 242, 404
CviJI RGCY 8 cut(s) 17, 265, 401, 514, 575, 614, 736, 838
CviKI_1 RGCY 8 cut(s) 17, 265, 401, 514, 575, 614, 736, 838
CviQI GTAC 3 cut(s) 38, 420, 657
DdeI CTNAG 4 cut(s) 101, 330, 357, 675
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco105I TACGTA 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 526
EcoT22I ATGCAT 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 526
Fnu4HI GCNGC 3 cut(s) 576, 603, 839
FokI GGATG 2 cut(s) 268, 722
Fsp4HI GCNGC 3 cut(s) 576, 603, 839
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 685
GluI GCNGC 3 cut(s) 576, 603, 839
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 687
HapII CCGG 4 cut(s) 243, 405, 455, 725
HhaI GCGC 1 cut(s) 686
Hin6I GCGC 1 cut(s) 684
HinP1I GCGC 1 cut(s) 684
HinfI GANTC 1 cut(s) 497
HpaII CCGG 4 cut(s) 243, 405, 455, 725
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 5 cut(s) 73, 155, 236, 422, 460
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 2 cut(s) 268, 390
Hpy8I GTNNAC 5 cut(s) 73, 155, 236, 422, 460
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 58, 223, 583, 700
HpyCH4III ACNGT 2 cut(s) 86, 464
HpyCH4IV ACGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 281, 578, 841
HpyF10VI GCNNNNNNNGC 1 cut(s) 611
HpyF3I CTNAG 4 cut(s) 101, 330, 357, 675
HpySE526I ACGT 1 cut(s) 130
HspAI GCGC 1 cut(s) 684
Kzo9I GATC 1 cut(s) 256
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 2 cut(s) 24, 270
Lsp1109I GCAGC 3 cut(s) 562, 589, 825
LweI GCATC 3 cut(s) 268, 290, 699
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 1 cut(s) 687
MaeII ACGT 1 cut(s) 130
MaeIII GTNAC 4 cut(s) 50, 333, 464, 712
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 6 cut(s) 299, 377, 423, 497, 599, 824
MfeI CAATTG 2 cut(s) 642, 669
MluCI AATT 8 cut(s) 32, 133, 348, 552, 621, 642, 669, 857
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 7 cut(s) 61, 103, 450, 590, 631, 674, 819
Mph1103I ATGCAT 1 cut(s) 283
MseI TTAA 2 cut(s) 198, 860
MspI CCGG 4 cut(s) 243, 405, 455, 725
MspR9I CCNGG 2 cut(s) 426, 726
MunI CAATTG 2 cut(s) 642, 669
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 611
NciI CCSGG 1 cut(s) 726
NdeII GATC 1 cut(s) 256
NheI GCTAGC 1 cut(s) 686
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 2 cut(s) 50, 464
NsiI ATGCAT 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 830
PfeI GAWTC 1 cut(s) 497
PinAI ACCGGT 2 cut(s) 242, 404
PkrI GCNGC 3 cut(s) 577, 604, 840
Ppu21I YACGTR 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 266
PsrI GAACNNNNNNTAC 4 cut(s) 21, 53, 412, 444
RsaI GTAC 3 cut(s) 39, 421, 658
RsaNI GTAC 3 cut(s) 38, 420, 657
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 198, 860
SatI GCNGC 3 cut(s) 576, 603, 839
Sau3AI GATC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 426, 726
SexAI ACCWGGT 1 cut(s) 424
SfaNI GCATC 3 cut(s) 268, 290, 699
SfcI CTRYAG 1 cut(s) 273
SnaBI TACGTA 1 cut(s) 131
Sse9I AATT 8 cut(s) 32, 133, 348, 552, 621, 642, 669, 857
SsiI CCGC 1 cut(s) 660
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 2 cut(s) 424, 724
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 2 cut(s) 86, 464
TaiI ACGT 1 cut(s) 133
TasI AATT 8 cut(s) 32, 133, 348, 552, 621, 642, 669, 857
TatI WGTACW 2 cut(s) 37, 419
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 2 cut(s) 198, 860
Tru9I TTAA 2 cut(s) 198, 860
TscAI CASTG 2 cut(s) 212, 467
TseFI GTSAC 2 cut(s) 50, 464
TseI GCWGC 3 cut(s) 575, 602, 838
Tsp45I GTSAC 2 cut(s) 50, 464
TspDTI ATGAA 5 cut(s) 77, 191, 486, 489, 719
TspGWI ACGGA 1 cut(s) 779
TspRI CASTG 2 cut(s) 212, 467
XspI CTAG 1 cut(s) 687
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.