Rh4CG114400
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000240
Physical Location & Seq
Reverse (-)
21745641 .. 21749563
3923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG114400.1

Sequence Viewer

Length: 405 bp
ATGATGGCTATTTATGTCAACATGTTCAGGGGTAGCATAGCCCTAGGTCATTTTGTCATGATTCCCTCAACTACTATAGATATTGAAGAGGTTGTGGAGGATTCAGGGCATAATTTAATTTATGGAGATGATGAAGAGGATTCTGACCAAGATAATGAACATAGAGGCAAAAAGAGAACAAATTTGGAACGCCAAACAAAGGCAGATAAAGAAAAAAAAGGAAAAGGAGTTTTGGGAGGGCCAAAGGGGAAGAAAGAAAAGGTGGGAGGTGCGGCGAAATTGTCTAAACAAATCGATCGTCTTGTTGATGTAGTCGAGAGTAGGAGTACAGCCACATCTGTACATGACAATGGCACCTCACAAGGAACTAGTATTCAAGAGGTGATGAGAGTTGTTGTAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

134

Amino Acids

14.67

Weight (kDa)

6.09

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AciI CCGC 1 cut(s) 272
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 2 cut(s) 328, 342
AfiI CCNNNNNNNGG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 2 cut(s) 86, 377
AhlI ACTAGT 1 cut(s) 368
AoxI GGCC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 181
ArsI GACNNNNNNTTYG 2 cut(s) 283, 315
AspA2I CCTAGG 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 394
AvrII CCTAGG 1 cut(s) 43
BanI GGYRCC 1 cut(s) 353
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 2 cut(s) 44, 369
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 43
BlsI GCNGC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 355
Bsa29I ATCGAT 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 199
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 241
BshNI GGYRCC 1 cut(s) 353
BshVI ATCGAT 1 cut(s) 294
BsiEI CGRYCG 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 199
BsnI GGCC 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 1 cut(s) 272
BspANI GGCC 1 cut(s) 241
BspDI ATCGAT 1 cut(s) 294
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 353
BsrGI TGTACA 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 81, 129
BstAUI TGTACA 1 cut(s) 340
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMCI CGRYCG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 75
Bsu15I ATCGAT 1 cut(s) 294
BsuRI GGCC 1 cut(s) 241
BsuTUI ATCGAT 1 cut(s) 294
CciI TCATGA 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 294
Csp6I GTAC 2 cut(s) 327, 341
CviAII CATG 3 cut(s) 22, 58, 344
CviJI RGCY 4 cut(s) 8, 41, 241, 332
CviKI_1 RGCY 4 cut(s) 8, 41, 241, 332
CviQI GTAC 2 cut(s) 327, 341
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 81, 129
EarI CTCTTC 2 cut(s) 81, 129
Eco130I CCWWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 3 cut(s) 25, 61, 347
FatI CATG 3 cut(s) 21, 57, 343
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 2 cut(s) 44, 369
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 3 cut(s) 25, 61, 347
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 3 cut(s) 61, 101, 140
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 58, 316, 377
Hpy8I GTNNAC 1 cut(s) 19
Hsp92II CATG 3 cut(s) 25, 61, 347
Kzo9I GATC 1 cut(s) 295
LpnPI CCDG 2 cut(s) 13, 90
MaeI CTAG 2 cut(s) 44, 369
MaeIII GTNAC 1 cut(s) 397
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 3 cut(s) 98, 146, 262
MluCI AATT 4 cut(s) 112, 117, 181, 278
MnlI CCTC 9 cut(s) 76, 82, 91, 130, 158, 230, 260, 367, 373
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 348
NdeII GATC 1 cut(s) 295
NlaIII CATG 3 cut(s) 25, 61, 347
NlaIV GGNNCC 1 cut(s) 355
NspI RCATGY 1 cut(s) 25
PagI TCATGA 1 cut(s) 57
PciI ACATGT 1 cut(s) 21
PfeI GAWTC 3 cut(s) 61, 101, 140
PkrI GCNGC 1 cut(s) 274
Ple19I CGATCG 1 cut(s) 298
PscI ACATGT 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 239
PvuI CGATCG 1 cut(s) 298
RsaI GTAC 2 cut(s) 328, 342
RsaNI GTAC 2 cut(s) 327, 341
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 1 cut(s) 239
SetI ASST 6 cut(s) 49, 93, 264, 271, 359, 384
SfcI CTRYAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 348
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 4 cut(s) 112, 117, 181, 278
SsiI CCGC 1 cut(s) 272
SspMI CTAG 2 cut(s) 44, 369
StyI CCWWGG 1 cut(s) 43
TaqI TCGA 2 cut(s) 294, 315
TasI AATT 4 cut(s) 112, 117, 181, 278
TatI WGTACW 2 cut(s) 326, 340
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 3 cut(s) 61, 101, 140
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 147, 171
XapI RAATTY 1 cut(s) 181
XceI RCATGY 1 cut(s) 25
XmaJI CCTAGG 1 cut(s) 43
XspI CTAG 2 cut(s) 44, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.