Rorug03G0068700

Domain of unknown function (DUF3453)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
5278474 .. 5278737
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0068700.1

Sequence Viewer

Length: 264 bp
ATGAACGACGAGCTCTGCAACCCCCTACTCTGGTCCACCAATTCCTCTGCCGCCGTTGTTGCTACCACCACAAACGGACATTCTTCACTCTCAAACGGCGTCGTTCATAGCGATTCGTCTTCTTCTGACAACACTAATACCCAAAATCACGAAGACTCAAGCGGCGGTGGTGGTCCTGGGAATGGCGGAGCTCTTGAGGAGGCTCGGTTTCGGAATAAGAACTCCCGTGACGGCGCTCCGGGCTGTTCTGGCAGAAATTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

8.81

Weight (kDa)

5.04

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 51, 162, 165, 186
AcsI RAATTY 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 2 cut(s) 30, 182
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 13, 191
AluI AGCT 2 cut(s) 13, 191
Alw21I GWGCWC 2 cut(s) 15, 193
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 33, 173
AsuC2I CCSGG 1 cut(s) 240
AvaII GGWCC 2 cut(s) 33, 173
BanII GRGCYC 2 cut(s) 15, 193
BbsI GAAGAC 2 cut(s) 111, 159
Bbv12I GWGCWC 2 cut(s) 15, 193
BceAI ACGGC 3 cut(s) 38, 112, 247
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 237
BisI GCNGC 2 cut(s) 51, 163
BlsI GCNGC 2 cut(s) 52, 164
Bme1390I CCNGG 2 cut(s) 177, 240
Bme18I GGWCC 2 cut(s) 33, 173
BmgT120I GGNCC 2 cut(s) 33, 173
BmrFI CCNGG 2 cut(s) 177, 240
BpiI GAAGAC 2 cut(s) 111, 159
BpuEI CTTGAG 2 cut(s) 142, 215
BpuMI CCSGG 1 cut(s) 240
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 182
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 30, 182
BseRI GAGGAG 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 15, 193
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 30, 182
Bsp1286I GDGCHC 2 cut(s) 15, 193
BspACI CCGC 4 cut(s) 51, 162, 165, 186
BssECI CCNNGG 1 cut(s) 176
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstMWI GCNNNNNNNGC 3 cut(s) 59, 240, 249
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 175, 238
BstV2I GAAGAC 2 cut(s) 111, 159
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 33, 173
CseI GACGC 1 cut(s) 88
CviJI RGCY 4 cut(s) 13, 191, 203, 243
CviKI_1 RGCY 4 cut(s) 13, 191, 203, 243
EciI GGCGGA 1 cut(s) 201
Ecl136II GAGCTC 2 cut(s) 13, 191
Eco24I GRGCYC 2 cut(s) 15, 193
Eco47I GGWCC 2 cut(s) 33, 173
Eco53kI GAGCTC 2 cut(s) 13, 191
EcoICRI GAGCTC 2 cut(s) 13, 191
EcoRII CCWGG 1 cut(s) 175
EcoT38I GRGCYC 2 cut(s) 15, 193
FaiI YATR 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 51, 163
FriOI GRGCYC 2 cut(s) 15, 193
Fsp4HI GCNGC 2 cut(s) 51, 163
GlaI GCGC 1 cut(s) 235
GluI GCNGC 2 cut(s) 51, 163
HaeII RGCGCY 1 cut(s) 237
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 99
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 2 cut(s) 113, 155
HpaII CCGG 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 2 cut(s) 127, 213
Hpy188III TCNNGA 2 cut(s) 149, 194
Hpy8I GTNNAC 1 cut(s) 36
Hpy99I CGWCG 2 cut(s) 11, 104
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 240, 249
Hsp92I GRCGYC 1 cut(s) 99
HspAI GCGC 1 cut(s) 234
LmnI GCTCC 2 cut(s) 188, 241
LpnPI CCDG 5 cut(s) 16, 162, 189, 234, 252
MaeIII GTNAC 1 cut(s) 227
MboII GAAGA 4 cut(s) 75, 111, 114, 164
MhlI GDGCHC 2 cut(s) 15, 193
MluCI AATT 2 cut(s) 40, 256
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 55, 190, 193
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 177, 240
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 59, 240, 249
NciI CCSGG 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 52, 164
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp124BI GAGCTC 2 cut(s) 15, 193
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspPI GGNCC 2 cut(s) 33, 173
SacI GAGCTC 2 cut(s) 15, 193
SatI GCNGC 2 cut(s) 51, 163
Sau96I GGNCC 2 cut(s) 33, 173
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 177, 240
SduI GDGCHC 2 cut(s) 15, 193
SetI ASST 2 cut(s) 15, 193
SinI GGWCC 2 cut(s) 33, 173
SmlI CTYRAG 2 cut(s) 157, 194
SmoI CTYRAG 2 cut(s) 157, 194
Sse9I AATT 2 cut(s) 40, 256
SsiI CCGC 4 cut(s) 51, 162, 165, 186
SstI GAGCTC 2 cut(s) 15, 193
StyD4I CCNGG 2 cut(s) 175, 238
TasI AATT 2 cut(s) 40, 256
TauI GCSGC 2 cut(s) 53, 165
TfiI GAWTC 1 cut(s) 113
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 17, 95
TspGWI ACGGA 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 33, 173
XapI RAATTY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.