RchiOBHm_Chr4g0406011
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000240
Physical Location & Seq
Reverse (-)
27062719 .. 27062943
225 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37745

Sequence Viewer

Length: 225 bp
ATGGGAAAAGAGTTGGCTATTTGGAATGAGGGTTTAGTAGATGTTTTTTGTGACATATGTATCAAGGAGGTGGATAACAATAATCGTCCACATACTCATTTTAATCCGGAGGGATGGGTGAATATAATCAATAATTTTTCTAAAGAAACGGGCAAAGAATATACTAGAAAACAACTGAAAAATAAATGGGATTCCCTCAAAGATCATTGGAAATTATGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

74

Amino Acids

8.9

Weight (kDa)

7.8

Isoelectric Point (pI)

19.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 8 - 74 3.1e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
Aor13HI TCCGGA 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 130
BaeI ACNNNNGTAYC 2 cut(s) 43, 76
BccI CCATC 1 cut(s) 108
BfaI CTAG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 106
BseAI TCCGGA 1 cut(s) 106
BseGI GGATG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 202
BspEI TCCGGA 1 cut(s) 106
BssMI GATC 1 cut(s) 202
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 119
CviJI RGCY 1 cut(s) 17
CviKI_1 RGCY 1 cut(s) 17
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
FaiI YATR 6 cut(s) 56, 58, 93, 125, 162, 217
FauNDI CATATG 1 cut(s) 56
FokI GGATG 1 cut(s) 126
FspBI CTAG 1 cut(s) 165
HapII CCGG 1 cut(s) 107
HinfI GANTC 1 cut(s) 191
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 1 cut(s) 89
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 1 cut(s) 120
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 50
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MluCI AATT 2 cut(s) 133, 212
MnlI CCTC 4 cut(s) 22, 61, 103, 206
MroI TCCGGA 1 cut(s) 106
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 56
NdeII GATC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 1 cut(s) 202
SetI ASST 1 cut(s) 72
SgeI CNNG 4 cut(s) 76, 119, 162, 177
Sse9I AATT 2 cut(s) 133, 212
SspMI CTAG 1 cut(s) 165
TasI AATT 2 cut(s) 133, 212
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.