DDE superfamily endonuclease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 81, 389 |
| AccIII | TCCGGA | 1 cut(s) | 890 |
| AciI | CCGC | 2 cut(s) | 743, 782 |
| AclWI | GGATC | 2 cut(s) | 48, 830 |
| AcsI | RAATTY | 2 cut(s) | 578, 847 |
| AcyI | GRCGYC | 1 cut(s) | 49 |
| AfaI | GTAC | 2 cut(s) | 267, 704 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 33, 707, 866 |
| AgeI | ACCGGT | 1 cut(s) | 26 |
| AgsI | TTSAA | 7 cut(s) | 13, 149, 485, 656, 757, 1009, 1139 |
| AjnI | CCWGG | 2 cut(s) | 430, 975 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 899, 931 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 152, 184 |
| AluBI | AGCT | 1 cut(s) | 245 |
| AluI | AGCT | 1 cut(s) | 245 |
| Alw21I | GWGCWC | 1 cut(s) | 350 |
| Alw26I | GTCTC | 3 cut(s) | 17, 556, 1183 |
| AlwI | GGATC | 2 cut(s) | 48, 830 |
| Aor13HI | TCCGGA | 1 cut(s) | 890 |
| AoxI | GGCC | 1 cut(s) | 207 |
| ApeKI | GCWGC | 1 cut(s) | 293 |
| ApoI | RAATTY | 2 cut(s) | 578, 847 |
| AseI | ATTAAT | 1 cut(s) | 315 |
| AsiGI | ACCGGT | 1 cut(s) | 26 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 480 |
| AspLEI | GCGC | 1 cut(s) | 650 |
| AspS9I | GGNCC | 2 cut(s) | 208, 920 |
| AsuHPI | GGTGA | 2 cut(s) | 194, 412 |
| AvaII | GGWCC | 1 cut(s) | 920 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 798, 831 |
| BanI | GGYRCC | 2 cut(s) | 81, 389 |
| BauI | CACGAG | 1 cut(s) | 1054 |
| BbsI | GAAGAC | 1 cut(s) | 156 |
| Bbv12I | GWGCWC | 1 cut(s) | 350 |
| BbvI | GCAGC | 1 cut(s) | 280 |
| BccI | CCATC | 1 cut(s) | 780 |
| BciT130I | CCWGG | 2 cut(s) | 432, 977 |
| BciVI | GTATCC | 1 cut(s) | 887 |
| BclI | TGATCA | 1 cut(s) | 363 |
| BcoDI | GTCTC | 3 cut(s) | 17, 556, 1183 |
| BfaI | CTAG | 6 cut(s) | 507, 527, 545, 866, 951, 1234 |
| BfmI | CTRYAG | 1 cut(s) | 57 |
| BfoI | RGCGCY | 1 cut(s) | 651 |
| BfuI | GTATCC | 1 cut(s) | 887 |
| BisI | GCNGC | 2 cut(s) | 294, 744 |
| BlsI | GCNGC | 2 cut(s) | 295, 745 |
| Bme1390I | CCNGG | 2 cut(s) | 432, 977 |
| Bme18I | GGWCC | 1 cut(s) | 920 |
| BmgT120I | GGNCC | 2 cut(s) | 208, 920 |
| BmiI | GGNNCC | 7 cut(s) | 83, 210, 391, 921, 1029, 1084, 1155 |
| BmrFI | CCNGG | 2 cut(s) | 432, 977 |
| BmsI | GCATC | 3 cut(s) | 52, 74, 651 |
| BpiI | GAAGAC | 1 cut(s) | 156 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1104 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| Bsa29I | ATCGAT | 1 cut(s) | 824 |
| BsaHI | GRCGYC | 1 cut(s) | 49 |
| BsaI | GGTCTC | 2 cut(s) | 17, 556 |
| BsaJI | CCNNGG | 1 cut(s) | 975 |
| BsaWI | WCCGGW | 3 cut(s) | 26, 595, 890 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 33, 707, 866 |
| Bse118I | RCCGGY | 1 cut(s) | 26 |
| Bse1I | ACTGG | 1 cut(s) | 393 |
| Bse3DI | GCAATG | 3 cut(s) | 425, 1096, 1098 |
| BseAI | TCCGGA | 1 cut(s) | 890 |
| BseBI | CCWGG | 2 cut(s) | 432, 977 |
| BseCI | ATCGAT | 1 cut(s) | 824 |
| BseDI | CCNNGG | 1 cut(s) | 975 |
| BseGI | GGATG | 3 cut(s) | 421, 458, 791 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 33, 707, 866 |
| BseMI | GCAATG | 3 cut(s) | 425, 1096, 1098 |
| BseMII | CTCAG | 5 cut(s) | 180, 237, 1008, 1118, 1178 |
| BseNI | ACTGG | 1 cut(s) | 393 |
| BseXI | GCAGC | 1 cut(s) | 280 |
| BsgI | GTGCAG | 1 cut(s) | 1078 |
| BshFI | GGCC | 1 cut(s) | 209 |
| BshNI | GGYRCC | 2 cut(s) | 81, 389 |
| BshTI | ACCGGT | 1 cut(s) | 26 |
| BshVI | ATCGAT | 1 cut(s) | 824 |
| BsiHKAI | GWGCWC | 1 cut(s) | 350 |
| BsiSI | CCGG | 3 cut(s) | 27, 596, 891 |
| BslFI | GGGAC | 2 cut(s) | 459, 933 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 33, 707, 866 |
| BsmAI | GTCTC | 3 cut(s) | 17, 556, 1183 |
| BsmBI | CGTCTC | 1 cut(s) | 1183 |
| BsmFI | GGGAC | 2 cut(s) | 459, 933 |
| BsnI | GGCC | 1 cut(s) | 209 |
| Bso31I | GGTCTC | 2 cut(s) | 17, 556 |
| Bsp1286I | GDGCHC | 1 cut(s) | 350 |
| Bsp13I | TCCGGA | 1 cut(s) | 890 |
| Bsp143I | GATC | 5 cut(s) | 40, 363, 529, 600, 835 |
| BspACI | CCGC | 2 cut(s) | 743, 782 |
| BspANI | GGCC | 1 cut(s) | 209 |
| BspCNI | CTCAG | 5 cut(s) | 181, 238, 1007, 1117, 1177 |
| BspDI | ATCGAT | 1 cut(s) | 824 |
| BspEI | TCCGGA | 1 cut(s) | 890 |
| BspHI | TCATGA | 1 cut(s) | 802 |
| BspLI | GGNNCC | 7 cut(s) | 83, 210, 391, 921, 1029, 1084, 1155 |
| BspPI | GGATC | 2 cut(s) | 48, 830 |
| BspT107I | GGYRCC | 2 cut(s) | 81, 389 |
| BspTNI | GGTCTC | 2 cut(s) | 17, 556 |
| BsrDI | GCAATG | 3 cut(s) | 425, 1096, 1098 |
| BsrFI | RCCGGY | 1 cut(s) | 26 |
| BsrI | ACTGG | 1 cut(s) | 393 |
| BssAI | RCCGGY | 1 cut(s) | 26 |
| BssECI | CCNNGG | 1 cut(s) | 975 |
| BssMI | GATC | 5 cut(s) | 40, 363, 529, 600, 835 |
| BssNI | GRCGYC | 1 cut(s) | 49 |
| BssSI | CACGAG | 1 cut(s) | 1054 |
| Bst2BI | CACGAG | 1 cut(s) | 1054 |
| Bst2UI | CCWGG | 2 cut(s) | 432, 977 |
| Bst4CI | ACNGT | 3 cut(s) | 502, 702, 1226 |
| BstACI | GRCGYC | 1 cut(s) | 49 |
| BstDEI | CTNAG | 5 cut(s) | 189, 246, 994, 1104, 1164 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 864 |
| BstF5I | GGATG | 3 cut(s) | 421, 458, 791 |
| BstH2I | RGCGCY | 1 cut(s) | 651 |
| BstHHI | GCGC | 1 cut(s) | 650 |
| BstKTI | GATC | 5 cut(s) | 43, 366, 532, 603, 838 |
| BstMAI | GTCTC | 3 cut(s) | 17, 556, 1183 |
| BstMBI | GATC | 5 cut(s) | 40, 363, 529, 600, 835 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 302, 977, 1100 |
| BstNI | CCWGG | 2 cut(s) | 432, 977 |
| BstNSI | RCATGY | 2 cut(s) | 625, 750 |
| BstSCI | CCNGG | 2 cut(s) | 430, 975 |
| BstSFI | CTRYAG | 1 cut(s) | 57 |
| BstV1I | GCAGC | 1 cut(s) | 280 |
| BstV2I | GAAGAC | 1 cut(s) | 156 |
| BstX2I | RGATCY | 1 cut(s) | 835 |
| BstYI | RGATCY | 1 cut(s) | 835 |
| Bsu15I | ATCGAT | 1 cut(s) | 824 |
| BsuI | GTATCC | 1 cut(s) | 887 |
| BsuRI | GGCC | 1 cut(s) | 209 |
| BsuTUI | ATCGAT | 1 cut(s) | 824 |
| BtsCI | GGATG | 3 cut(s) | 421, 458, 791 |
| BtsI | GCAGTG | 2 cut(s) | 1066, 1210 |
| BtsIMutI | CAGTG | 2 cut(s) | 1066, 1210 |
| CciI | TCATGA | 1 cut(s) | 802 |
| CfoI | GCGC | 1 cut(s) | 650 |
| Cfr10I | RCCGGY | 1 cut(s) | 26 |
| Cfr13I | GGNCC | 2 cut(s) | 208, 920 |
| ClaI | ATCGAT | 1 cut(s) | 824 |
| CseI | GACGC | 1 cut(s) | 38 |
| Csp6I | GTAC | 2 cut(s) | 266, 703 |
| CspAI | ACCGGT | 1 cut(s) | 26 |
| CviAII | CATG | 7 cut(s) | 172, 361, 406, 533, 622, 747, 803 |
| CviQI | GTAC | 2 cut(s) | 266, 703 |
| DdeI | CTNAG | 5 cut(s) | 189, 246, 994, 1104, 1164 |
| DpnI | GATC | 5 cut(s) | 42, 365, 531, 602, 837 |
| DpnII | GATC | 5 cut(s) | 40, 363, 529, 600, 835 |
| Eco31I | GGTCTC | 2 cut(s) | 17, 556 |
| Eco47I | GGWCC | 1 cut(s) | 920 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 864 |
| EcoO109I | RGGNCCY | 1 cut(s) | 920 |
| EcoRII | CCWGG | 2 cut(s) | 430, 975 |
| EcoT22I | ATGCAT | 2 cut(s) | 67, 1127 |
| Esp3I | CGTCTC | 1 cut(s) | 1183 |
| FaeI | CATG | 7 cut(s) | 175, 364, 409, 536, 625, 750, 806 |
| FaqI | GGGAC | 2 cut(s) | 459, 933 |
| FatI | CATG | 7 cut(s) | 171, 360, 405, 532, 621, 746, 802 |
| FauI | CCCGC | 1 cut(s) | 775 |
| FbaI | TGATCA | 1 cut(s) | 363 |
| Fnu4HI | GCNGC | 2 cut(s) | 294, 744 |
| FokI | GGATG | 3 cut(s) | 428, 465, 798 |
| Fsp4HI | GCNGC | 2 cut(s) | 294, 744 |
| FspBI | CTAG | 6 cut(s) | 507, 527, 545, 866, 951, 1234 |
| GlaI | GCGC | 1 cut(s) | 649 |
| GluI | GCNGC | 2 cut(s) | 294, 744 |
| HaeII | RGCGCY | 1 cut(s) | 651 |
| HaeIII | GGCC | 1 cut(s) | 209 |
| HapII | CCGG | 3 cut(s) | 27, 596, 891 |
| HgaI | GACGC | 1 cut(s) | 38 |
| HhaI | GCGC | 1 cut(s) | 650 |
| Hin1I | GRCGYC | 1 cut(s) | 49 |
| Hin1II | CATG | 7 cut(s) | 175, 364, 409, 536, 625, 750, 806 |
| Hin6I | GCGC | 1 cut(s) | 648 |
| HinP1I | GCGC | 1 cut(s) | 648 |
| HinfI | GANTC | 5 cut(s) | 185, 887, 946, 954, 1139 |
| HpaII | CCGG | 3 cut(s) | 27, 596, 891 |
| HphI | GGTGA | 2 cut(s) | 194, 412 |
| Hpy166II | GTNNAC | 2 cut(s) | 542, 551 |
| Hpy188I | TCNGA | 4 cut(s) | 70, 190, 571, 1144 |
| Hpy188III | TCNNGA | 8 cut(s) | 88, 507, 686, 803, 833, 839, 891, 1031 |
| Hpy8I | GTNNAC | 2 cut(s) | 542, 551 |
| HpyAV | CCTTC | 5 cut(s) | 7, 406, 576, 650, 785 |
| HpyCH4III | ACNGT | 3 cut(s) | 502, 702, 1226 |
| HpyCH4IV | ACGT | 2 cut(s) | 553, 1192 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 302, 977, 1100 |
| HpyF3I | CTNAG | 5 cut(s) | 189, 246, 994, 1104, 1164 |
| HpySE526I | ACGT | 2 cut(s) | 553, 1192 |
| Hsp92I | GRCGYC | 1 cut(s) | 49 |
| Hsp92II | CATG | 7 cut(s) | 175, 364, 409, 536, 625, 750, 806 |
| HspAI | GCGC | 1 cut(s) | 648 |
| Kpn2I | TCCGGA | 1 cut(s) | 890 |
| Ksp22I | TGATCA | 1 cut(s) | 363 |
| Kzo9I | GATC | 5 cut(s) | 40, 363, 529, 600, 835 |
| LmnI | GCTCC | 4 cut(s) | 345, 976, 1088, 1153 |
| Lsp1109I | GCAGC | 1 cut(s) | 280 |
| LweI | GCATC | 3 cut(s) | 52, 74, 651 |
| MaeI | CTAG | 6 cut(s) | 507, 527, 545, 866, 951, 1234 |
| MaeII | ACGT | 2 cut(s) | 553, 1192 |
| MaeIII | GTNAC | 3 cut(s) | 182, 418, 1207 |
| MalI | GATC | 5 cut(s) | 42, 365, 531, 602, 837 |
| MboI | GATC | 5 cut(s) | 40, 363, 529, 600, 835 |
| MboII | GAAGA | 1 cut(s) | 161 |
| MfeI | CAATTG | 1 cut(s) | 333 |
| MflI | RGATCY | 1 cut(s) | 835 |
| MhlI | GDGCHC | 1 cut(s) | 350 |
| MlyI | GAGTC | 3 cut(s) | 179, 940, 948 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| Mph1103I | ATGCAT | 2 cut(s) | 67, 1127 |
| MroI | TCCGGA | 1 cut(s) | 890 |
| MroXI | GAANNNNTTC | 1 cut(s) | 480 |
| MseI | TTAA | 5 cut(s) | 119, 315, 399, 582, 633 |
| MslI | CAYNNNNRTG | 1 cut(s) | 492 |
| MspI | CCGG | 3 cut(s) | 27, 596, 891 |
| MspR9I | CCNGG | 2 cut(s) | 432, 977 |
| MunI | CAATTG | 1 cut(s) | 333 |
| MvaI | CCWGG | 2 cut(s) | 432, 977 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 302, 977, 1100 |
| NdeII | GATC | 5 cut(s) | 40, 363, 529, 600, 835 |
| NlaIII | CATG | 7 cut(s) | 175, 364, 409, 536, 625, 750, 806 |
| NlaIV | GGNNCC | 7 cut(s) | 83, 210, 391, 921, 1029, 1084, 1155 |
| NmuCI | GTSAC | 2 cut(s) | 182, 418 |
| NsiI | ATGCAT | 2 cut(s) | 67, 1127 |
| NspI | RCATGY | 2 cut(s) | 625, 750 |
| PagI | TCATGA | 1 cut(s) | 802 |
| PdmI | GAANNNNTTC | 1 cut(s) | 480 |
| PfeI | GAWTC | 2 cut(s) | 887, 1139 |
| PinAI | ACCGGT | 1 cut(s) | 26 |
| PkrI | GCNGC | 2 cut(s) | 295, 745 |
| PleI | GAGTC | 3 cut(s) | 179, 940, 948 |
| PpsI | GAGTC | 3 cut(s) | 179, 940, 948 |
| PpuMI | RGGWCCY | 1 cut(s) | 920 |
| PshBI | ATTAAT | 1 cut(s) | 315 |
| Psp5II | RGGWCCY | 1 cut(s) | 920 |
| Psp6I | CCWGG | 2 cut(s) | 430, 975 |
| PspGI | CCWGG | 2 cut(s) | 430, 975 |
| PspN4I | GGNNCC | 7 cut(s) | 83, 210, 391, 921, 1029, 1084, 1155 |
| PspPI | GGNCC | 2 cut(s) | 208, 920 |
| PspPPI | RGGWCCY | 1 cut(s) | 920 |
| PsuI | RGATCY | 1 cut(s) | 835 |
| RsaI | GTAC | 2 cut(s) | 267, 704 |
| RsaNI | GTAC | 2 cut(s) | 266, 703 |
| RseI | CAYNNNNRTG | 1 cut(s) | 492 |
| SaqAI | TTAA | 5 cut(s) | 119, 315, 399, 582, 633 |
| SatI | GCNGC | 2 cut(s) | 294, 744 |
| Sau3AI | GATC | 5 cut(s) | 40, 363, 529, 600, 835 |
| Sau96I | GGNCC | 2 cut(s) | 208, 920 |
| SchI | GAGTC | 3 cut(s) | 179, 940, 948 |
| ScrFI | CCNGG | 2 cut(s) | 432, 977 |
| SduI | GDGCHC | 1 cut(s) | 350 |
| SfaNI | GCATC | 3 cut(s) | 52, 74, 651 |
| SfcI | CTRYAG | 1 cut(s) | 57 |
| SinI | GGWCC | 1 cut(s) | 920 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 492 |
| SmlI | CTYRAG | 1 cut(s) | 86 |
| SmoI | CTYRAG | 1 cut(s) | 86 |
| SsiI | CCGC | 2 cut(s) | 743, 782 |
| SspI | AATATT | 4 cut(s) | 875, 1023, 1048, 1078 |
| SspMI | CTAG | 6 cut(s) | 507, 527, 545, 866, 951, 1234 |
| StyD4I | CCNGG | 2 cut(s) | 430, 975 |
| TaaI | ACNGT | 3 cut(s) | 502, 702, 1226 |
| TaiI | ACGT | 2 cut(s) | 556, 1195 |
| TaqI | TCGA | 4 cut(s) | 319, 438, 824, 832 |
| TauI | GCSGC | 1 cut(s) | 746 |
| TfiI | GAWTC | 2 cut(s) | 887, 1139 |
| Tru1I | TTAA | 5 cut(s) | 119, 315, 399, 582, 633 |
| Tru9I | TTAA | 5 cut(s) | 119, 315, 399, 582, 633 |
| TscAI | CASTG | 2 cut(s) | 1066, 1210 |
| TseFI | GTSAC | 2 cut(s) | 182, 418 |
| TseI | GCWGC | 1 cut(s) | 293 |
| Tsp45I | GTSAC | 2 cut(s) | 182, 418 |
| TspDTI | ATGAA | 7 cut(s) | 17, 160, 425, 510, 591, 860, 920 |
| TspRI | CASTG | 2 cut(s) | 1066, 1210 |
| VpaK11BI | GGWCC | 1 cut(s) | 920 |
| VspI | ATTAAT | 1 cut(s) | 315 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 864 |
| XapI | RAATTY | 2 cut(s) | 578, 847 |
| XbaI | TCTAGA | 1 cut(s) | 506 |
| XceI | RCATGY | 2 cut(s) | 625, 750 |
| XmnI | GAANNNNTTC | 1 cut(s) | 480 |
| XspI | CTAG | 6 cut(s) | 507, 527, 545, 866, 951, 1234 |
| Zsp2I | ATGCAT | 2 cut(s) | 67, 1127 |