Rmu_sc0008812.1_g000009
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008812.1
OG0000240
Physical Location & Seq
Forward (+)
41871 .. 42155
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008812.1_g000009.1.cds

Sequence Viewer

Length: 285 bp
atgggagggccaaaggggaagaaagaaaagatgggaggtgcagcgaaattgtctaaacaaattgatcatcttgttgaagtagttgagagtaggagtacagcgacatctgtctgtaatactagtacggaacaaggaacgaatattcaggaggtgatgcgagttgttgcaactttaccaggagcagaaactggtaccaagttgtggtggtttgcaacagagttgttttgttctcgagagaagcgagagatgttttctattatgacaaatgctaatctcaagctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

94

Amino Acids

10.32

Weight (kDa)

9.06

Isoelectric Point (pI)

35.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 201
AfaI GTAC 3 cut(s) 97, 124, 193
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 1 cut(s) 77
AhlI ACTAGT 1 cut(s) 119
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 1 cut(s) 280
AluI AGCT 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 231
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 231
BanI GGYRCC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 144
BoxI GACNNNNGTC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 60
BshFI GGCC 1 cut(s) 10
BshNI GGYRCC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 201
BsnI GGCC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 231
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 193
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 177
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 177
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 53
BsuRI GGCC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 3 cut(s) 96, 123, 192
CviJI RGCY 2 cut(s) 10, 280
CviKI_1 RGCY 2 cut(s) 10, 280
CviQI GTAC 3 cut(s) 96, 123, 192
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 175
FaiI YATR 1 cut(s) 260
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 120
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 278
HphI GGTGA 1 cut(s) 163
Hpy188III TCNNGA 3 cut(s) 146, 231, 233
HpyCH4V TGCA 3 cut(s) 41, 167, 212
KpnI GGTACC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 4 cut(s) 131, 162, 174, 189
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 144
MaeI CTAG 1 cut(s) 120
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 31
MluCI AATT 2 cut(s) 47, 60
MnlI CCTC 2 cut(s) 29, 142
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
NdeII GATC 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 193
PaeR7I CTCGAG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 43
PshAI GACNNNNGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 188
RsaI GTAC 3 cut(s) 97, 124, 193
RsaNI GTAC 3 cut(s) 96, 123, 192
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 177
SetI ASST 3 cut(s) 40, 153, 282
SfaNI GCATC 1 cut(s) 144
Sfr274I CTCGAG 1 cut(s) 231
SlaI CTCGAG 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 231, 275
SmoI CTYRAG 2 cut(s) 231, 275
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 2 cut(s) 47, 60
SspI AATATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 232
TasI AATT 2 cut(s) 47, 60
TatI WGTACW 1 cut(s) 95
TseI GCWGC 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 140
Van91I CCANNNNNTGG 1 cut(s) 201
XhoI CTCGAG 1 cut(s) 231
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.