Rw5G042730
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000240
Physical Location & Seq
Forward (+)
74706132 .. 74709409
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G042730.1

Sequence Viewer

Length: 765 bp
ATGGGAAGGAAGAATACTAATGAAATTGGGGGAAGTGGATCACAAGTTAAAGCTGTATGGAATGATTATAATGTATCCAAATTTTGTGATCTGTGCATCAAGTTGGTGGATGCTGGACGTCGTCCTAATACTCATTTTGACAGAGAAGGATGGGAGAGTTTGTTGTGGAAAGAACTCCTTGGCAAGGAAACTGGTTTAGGGTGGAATCCTAGCAAGGGCACTGTTGATGCACTTGCCGAATGGTGGCATAGTAAGATTCAGGTCAATCCCGAATATGCAAAACTGAGTAAAAAAGGTCTTAATCCTGAATTGGATGAGAAGCTAGATAGAATGTTTTCAAACATTATAGCCATTGGTGAACATGCTTGGGCACCTTCTTGTGGGAGCCTTCCATCTCCAAAATCATACATATGCAAGGATGATGTCATTCCACTTGAAGGGAGTGATGATTCAGTGGATTTTACTCCAATAGAAAGAAGTGGGGGTAAGGAAGGTGTTTCAAGGAGAGGGAAAAAAAGATTGACTGATGAAGCTGAATTACAAGCTAAAGAGGAAAAGAAACCTAAAGGACCCATTGTTCTAGGCAAGCACAAGGTGGGAGGTGTTACAAAGTTATCTCAACAAATAGATCGTTTTATTGATGTAGTTGAGAATAAGAGTGCTGGAACATCAAACTGTGTGAAAAGCGCAGAAAGCTATACTATTGTTGAAGCAATGGAAGCACTTGAGTCTGTCCCTTATTGCGAGCCTGGGAGCACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

254

Amino Acids

27.98

Weight (kDa)

6.16

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AatII GACGTC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 370
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 595
AfiI CCNNNNNNNGG 5 cut(s) 184, 215, 243, 380, 437
AgsI TTSAA 4 cut(s) 339, 437, 501, 710
AjnI CCWGG 1 cut(s) 748
AloI GAACNNNNNNTCC 2 cut(s) 561, 593
AluBI AGCT 5 cut(s) 53, 322, 533, 545, 696
AluI AGCT 5 cut(s) 53, 322, 533, 545, 696
Alw21I GWGCWC 1 cut(s) 758
AlwI GGATC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 569
BaeGI GKGCMC 2 cut(s) 221, 373
BanI GGYRCC 1 cut(s) 370
BarI GAAGNNNNNNTAC 3 cut(s) 30, 522, 554
Bbv12I GWGCWC 1 cut(s) 758
BccI CCATC 2 cut(s) 144, 400
BciT130I CCWGG 1 cut(s) 750
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 3 cut(s) 210, 323, 581
BfuI GTATCC 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 3 cut(s) 372, 386, 571
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 3 cut(s) 100, 105, 217
BpuEI CTTGAG 1 cut(s) 746
BsaHI GRCGYC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 178, 749
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 5 cut(s) 184, 215, 243, 380, 437
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 720
BseBI CCWGG 1 cut(s) 750
BseDI CCNNGG 2 cut(s) 178, 749
BseGI GGATG 4 cut(s) 115, 155, 319, 424
BseLI CCNNNNNNNGG 5 cut(s) 184, 215, 243, 380, 437
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 196
BseSI GKGCMC 2 cut(s) 221, 373
BshNI GGYRCC 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 758
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 5 cut(s) 184, 215, 243, 380, 437
BsmFI GGGAC 1 cut(s) 719
Bsp1286I GDGCHC 3 cut(s) 221, 373, 758
Bsp143I GATC 3 cut(s) 38, 88, 628
BspCNI CTCAG 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 372, 386, 571
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 720
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 2 cut(s) 178, 749
BssMI GATC 3 cut(s) 38, 88, 628
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 223, 677
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 587, 746
BstDEI CTNAG 1 cut(s) 284
BstENI CCTNNNNNAGG 1 cut(s) 182
BstF5I GGATG 4 cut(s) 115, 155, 319, 424
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 3 cut(s) 41, 91, 631
BstMBI GATC 3 cut(s) 38, 88, 628
BstMWI GCNNNNNNNGC 2 cut(s) 693, 719
BstNI CCWGG 1 cut(s) 750
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 748
BstSLI GKGCMC 2 cut(s) 221, 373
BsuI GTATCC 1 cut(s) 85
BtsCI GGATG 4 cut(s) 115, 155, 319, 424
BtsIMutI CAGTG 2 cut(s) 219, 459
Cac8I GCNNGC 2 cut(s) 587, 746
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 1 cut(s) 569
CviAII CATG 1 cut(s) 362
CviJI RGCY 8 cut(s) 53, 322, 350, 387, 533, 545, 696, 748
CviKI_1 RGCY 8 cut(s) 53, 322, 350, 387, 533, 545, 696, 748
DdeI CTNAG 1 cut(s) 284
DpnI GATC 3 cut(s) 40, 90, 630
DpnII GATC 3 cut(s) 38, 88, 628
DraIII CACNNNGTG 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 569
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaeI CATG 1 cut(s) 365
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FaqI GGGAC 1 cut(s) 719
FatI CATG 1 cut(s) 361
FauNDI CATATG 1 cut(s) 410
FokI GGATG 4 cut(s) 122, 162, 326, 431
FspBI CTAG 3 cut(s) 210, 323, 581
GlaI GCGC 1 cut(s) 688
HhaI GCGC 1 cut(s) 689
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 1 cut(s) 365
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HinfI GANTC 4 cut(s) 205, 256, 449, 728
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 359
Hpy188III TCNNGA 2 cut(s) 269, 305
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 5 cut(s) 140, 384, 398, 431, 485
HpyCH4III ACNGT 2 cut(s) 223, 677
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 4 cut(s) 96, 230, 278, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 693, 719
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 1 cut(s) 118
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 1 cut(s) 365
HspAI GCGC 1 cut(s) 687
Kzo9I GATC 3 cut(s) 38, 88, 628
LmnI GCTCC 2 cut(s) 384, 753
LpnPI CCDG 6 cut(s) 99, 177, 245, 318, 648, 735
LweI GCATC 3 cut(s) 100, 105, 217
MaeI CTAG 3 cut(s) 210, 323, 581
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 604
MalI GATC 3 cut(s) 40, 90, 630
MboI GATC 3 cut(s) 38, 88, 628
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 3 cut(s) 221, 373, 758
MluCI AATT 4 cut(s) 24, 80, 308, 536
MlyI GAGTC 1 cut(s) 737
MnlI CCTC 3 cut(s) 500, 544, 593
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 2 cut(s) 48, 300
MslI CAYNNNNRTG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 750
MvaI CCWGG 1 cut(s) 750
MwoI GCNNNNNNNGC 2 cut(s) 693, 719
NdeI CATATG 1 cut(s) 410
NdeII GATC 3 cut(s) 38, 88, 628
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 3 cut(s) 372, 386, 571
NspI RCATGY 1 cut(s) 365
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 205, 256, 449
PflFI GACNNNGTC 1 cut(s) 120
PleI GAGTC 1 cut(s) 736
PpsI GAGTC 1 cut(s) 736
PpuMI RGGWCCY 1 cut(s) 569
PsiI TTATAA 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PspN4I GGNNCC 3 cut(s) 372, 386, 571
PspPI GGNCC 1 cut(s) 569
PspPPI RGGWCCY 1 cut(s) 569
PsyI GACNNNGTC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 409
SaqAI TTAA 2 cut(s) 48, 300
Sau3AI GATC 3 cut(s) 38, 88, 628
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 3 cut(s) 221, 373, 758
SfaNI GCATC 3 cut(s) 100, 105, 217
SinI GGWCC 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 409
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 4 cut(s) 24, 80, 308, 536
SspMI CTAG 3 cut(s) 210, 323, 581
StyD4I CCNGG 1 cut(s) 748
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 2 cut(s) 223, 677
TaiI ACGT 1 cut(s) 121
TasI AATT 4 cut(s) 24, 80, 308, 536
TfiI GAWTC 3 cut(s) 205, 256, 449
Tru1I TTAA 2 cut(s) 48, 300
Tru9I TTAA 2 cut(s) 48, 300
TscAI CASTG 2 cut(s) 226, 459
TspDTI ATGAA 2 cut(s) 36, 543
TspRI CASTG 2 cut(s) 226, 459
Tth111I GACNNNGTC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 569
XagI CCTNNNNNAGG 1 cut(s) 182
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 3 cut(s) 210, 323, 581
ZraI GACGTC 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.