pycom03g16230
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000240
Physical Location & Seq
Reverse (-)
17374904 .. 17375431
528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16230.1

Sequence Viewer

Length: 528 bp
ATGGCGGACAAGTTAGATAGGATGTTCTTGAGTACAATTGCTACCCGTGAACATGCCTGGGCACCTTCATCTGGAGTACTACCACCAGAGTCAAGAGAGGAATCTGTAGGACAAATTGATTCATATGATGAGGAAGAAACTGAGACTATGCAGGATCTAAGGCAAGCAAGTAGGAAGGGAAAAAAAAGAGCAGCTAACCAAGAAGAATTGCAAAAGAAGAAGGTTGATAAGAAAGGGAAAAAAATTGGAGGTGCTGCAAAACTTTGTGGTCAAATTGACCGTCTTGTTGAAGCTTATGAAACTAGGAGTTCTGCAAACTCATTGATGAGGTCGCTGCATATAGGTAGTAGTATTCCGGAAGTGTTAGCGATTGTTGCACAATTGCCTGGTTGTGAGCCACCTAGCGAGTTATGGTTGTTTGCTACATGTTTATTTTGTTCTGCAGAGAAGCGAAAGGTGTTTACCACGATACAAGATCCTGAAGTCCAGCTGACTTGGTTGAAATATATGTTCAACAAAGAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

176

Amino Acids

19.71

Weight (kDa)

6.75

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 162, 470
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 2 cut(s) 34, 78
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 3 cut(s) 290, 502, 514
AjnI CCWGG 2 cut(s) 56, 385
AluBI AGCT 3 cut(s) 194, 293, 490
AluI AGCT 3 cut(s) 194, 293, 490
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 2 cut(s) 162, 470
Aor13HI TCCGGA 1 cut(s) 355
ApeKI GCWGC 3 cut(s) 191, 254, 334
ArsI GACNNNNNNTTYG 2 cut(s) 265, 297
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 61
BbvI GCAGC 3 cut(s) 203, 241, 321
BciT130I CCWGG 2 cut(s) 58, 387
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 2 cut(s) 303, 402
BfmI CTRYAG 2 cut(s) 105, 441
BisI GCNGC 3 cut(s) 192, 255, 335
BlsI GCNGC 3 cut(s) 193, 256, 336
BmcAI AGTACT 1 cut(s) 78
Bme1390I CCNGG 2 cut(s) 58, 387
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 58, 387
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 2 cut(s) 58, 387
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 3 cut(s) 203, 241, 321
BshNI GGYRCC 1 cut(s) 61
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 154, 475
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 133
BspEI TCCGGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 445
BspPI GGATC 2 cut(s) 162, 470
BspT107I GGYRCC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 2 cut(s) 154, 475
Bst2UI CCWGG 2 cut(s) 58, 387
Bst4CI ACNGT 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 141, 158
BstF5I GGATG 1 cut(s) 27
BstKTI GATC 2 cut(s) 157, 478
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 2 cut(s) 154, 475
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 2 cut(s) 58, 387
BstNSI RCATGY 2 cut(s) 56, 429
BstSCI CCNGG 2 cut(s) 56, 385
BstSFI CTRYAG 2 cut(s) 105, 441
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 3 cut(s) 203, 241, 321
BstX2I RGATCY 2 cut(s) 154, 475
BstYI RGATCY 2 cut(s) 154, 475
BtsCI GGATG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 165
Csp6I GTAC 2 cut(s) 33, 77
CviAII CATG 2 cut(s) 53, 426
CviJI RGCY 4 cut(s) 194, 293, 397, 490
CviKI_1 RGCY 4 cut(s) 194, 293, 397, 490
CviQI GTAC 2 cut(s) 33, 77
DdeI CTNAG 2 cut(s) 141, 158
DpnI GATC 2 cut(s) 156, 477
DpnII GATC 2 cut(s) 154, 475
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 501
EcoRII CCWGG 2 cut(s) 56, 385
FaeI CATG 2 cut(s) 56, 429
FatI CATG 2 cut(s) 52, 425
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 192, 255, 335
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 3 cut(s) 192, 255, 335
FspBI CTAG 2 cut(s) 303, 402
GluI GCNGC 3 cut(s) 192, 255, 335
GsuI CTGGAG 1 cut(s) 93
HapII CCGG 1 cut(s) 356
Hin1II CATG 2 cut(s) 56, 429
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 3 cut(s) 89, 101, 119
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 50, 462
Hpy188III TCNNGA 5 cut(s) 28, 72, 93, 356, 479
Hpy8I GTNNAC 2 cut(s) 50, 462
HpyAV CCTTC 3 cut(s) 75, 169, 214
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 7 cut(s) 151, 211, 257, 314, 337, 377, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpyF3I CTNAG 2 cut(s) 141, 158
Hsp92II CATG 2 cut(s) 56, 429
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 154, 475
Lsp1109I GCAGC 3 cut(s) 203, 241, 321
MaeI CTAG 2 cut(s) 303, 402
MalI GATC 2 cut(s) 156, 477
MboI GATC 2 cut(s) 154, 475
MboII GAAGA 3 cut(s) 146, 215, 229
MfeI CAATTG 2 cut(s) 36, 380
MflI RGATCY 2 cut(s) 154, 475
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 6 cut(s) 36, 114, 206, 243, 273, 380
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 91, 124, 242, 321
MroI TCCGGA 1 cut(s) 355
MspA1I CMGCKG 1 cut(s) 490
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 58, 387
MunI CAATTG 2 cut(s) 36, 380
MvaI CCWGG 2 cut(s) 58, 387
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeI CATATG 1 cut(s) 124
NdeII GATC 2 cut(s) 154, 475
NlaIII CATG 2 cut(s) 56, 429
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 2 cut(s) 56, 429
PciI ACATGT 1 cut(s) 425
PfeI GAWTC 2 cut(s) 101, 119
PkrI GCNGC 3 cut(s) 193, 256, 336
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PscI ACATGT 1 cut(s) 425
Psp6I CCWGG 2 cut(s) 56, 385
PspGI CCWGG 2 cut(s) 56, 385
PspN4I GGNNCC 1 cut(s) 63
PstI CTGCAG 1 cut(s) 445
PsuI RGATCY 2 cut(s) 154, 475
PvuII CAGCTG 1 cut(s) 490
RsaI GTAC 2 cut(s) 34, 78
RsaNI GTAC 2 cut(s) 33, 77
SatI GCNGC 3 cut(s) 192, 255, 335
Sau3AI GATC 2 cut(s) 154, 475
ScaI AGTACT 1 cut(s) 78
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 58, 387
SduI GDGCHC 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 105, 441
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 6 cut(s) 36, 114, 206, 243, 273, 380
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 303, 402
StyD4I CCNGG 2 cut(s) 56, 385
TaaI ACNGT 1 cut(s) 281
TasI AATT 6 cut(s) 36, 114, 206, 243, 273, 380
TatI WGTACW 2 cut(s) 32, 76
TfiI GAWTC 2 cut(s) 101, 119
TseI GCWGC 3 cut(s) 191, 254, 334
TspDTI ATGAA 3 cut(s) 57, 111, 312
XceI RCATGY 2 cut(s) 56, 429
XspI CTAG 2 cut(s) 303, 402
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.