MD15G1314200.v1.1
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000240
Physical Location & Seq
Reverse (-)
31779193 .. 31786723
7531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1314200.v1.1.491

Sequence Viewer

Length: 942 bp
ATGCTGCTTGTTTTTGGGTTGTTGGTATCGATGGCAAAGAAGGGGGCATCTTCATCAAATCCTGTGGCTACATGGAATGCCCACAATATATCTATATTTTGTGATGTTTGCATCAAGGAGGTTGAGGCCGAACATCGTCCGGGTACTCACTTTGACAAAGATGGATATGCAAATATTAGAGCTAACTTCAAGGCAGAGACAGGGCATGATTATGATAGAAAGCAACTGAAAAATAAGTGGGATGCACTTAAAATTGAGTGGAAGTTGTGGAAAGAGCTAATTGGTAAAGAAACTGGCCTAGGGTGGAATTCGAGCAAGGGCACCGTTGATGCCTCTGAGGAGTGGTGGAATAATAAAATTCAGATAAACAAAGAATATGGAAAATTGCGGAAAAAAGGCATTAGTCCTGAGATGGAGGATAAGTTAGATAGGATGTTCTCGAACACAGTTGCTACCGGTGAACATGCTTGGGCACCTTCATCTGGAGTACTACCACCAGAGTCAAGAGATGAATCTATAGGGCAAATTGATTTGGATGATGAGGAAGAAAGTGAGACCATGCAGGATCTAAGGCAAGCTACTAGGAAGGGGAAAAAAAGAGCGACCAACCAAGGAGATTTTCAAAAGAAGAAGGTTGATAAGAAGGGGAAAAAAAAATTGGAGGTGCTGCAAAAACTTTCTGGTCAAATTGACCGTCTTGTTGAAGTTTATGAAAGTAGGAGTTCTGCAAACTCATTGATGAGGCCGCCGCATATAGGCTGTAGTATTGCGGAAGCGATAGCATCTGTTGCACAATTGCCTGGTTGTGAGCCACCTAGCGAGTTATGGTTGTTTGCTACATGTTTATTTTGTAGTACAGAGAAGCGAGAGGTGTTTGCCACTATGACTAATCCTGAAGTGCAGCTGACTTGGTTGAAATATATGTTCAACAAACAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

314

Amino Acids

35.49

Weight (kDa)

8.09

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 24 - 118 1e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 320, 472
AciI CCGC 4 cut(s) 388, 746, 749, 770
AclWI GGATC 1 cut(s) 573
AcsI RAATTY 2 cut(s) 307, 357
AcuI CTGAAG 1 cut(s) 915
AfaI GTAC 3 cut(s) 145, 489, 856
AfiI CCNNNNNNNGG 2 cut(s) 482, 755
AflIII ACRYGT 1 cut(s) 839
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 5 cut(s) 190, 623, 704, 916, 928
AjnI CCWGG 1 cut(s) 799
AjuI GAANNNNNNNTTGG 4 cut(s) 603, 635, 641, 673
AluBI AGCT 4 cut(s) 182, 277, 578, 904
AluI AGCT 4 cut(s) 182, 277, 578, 904
Alw26I GTCTC 2 cut(s) 191, 548
AlwI GGATC 1 cut(s) 573
AoxI GGCC 3 cut(s) 126, 295, 743
ApeKI GCWGC 3 cut(s) 4, 667, 901
ApoI RAATTY 2 cut(s) 307, 357
ArsI GACNNNNNNTTYG 2 cut(s) 679, 711
AsiGI ACCGGT 1 cut(s) 455
AspA2I CCTAGG 1 cut(s) 298
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 470
AvrII CCTAGG 1 cut(s) 298
BaeGI GKGCMC 2 cut(s) 323, 475
BanI GGYRCC 2 cut(s) 320, 472
BbvI GCAGC 2 cut(s) 654, 913
BccI CCATC 3 cut(s) 25, 155, 406
BciT130I CCWGG 1 cut(s) 801
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 191, 548
BfaI CTAG 3 cut(s) 299, 582, 816
BfmI CTRYAG 2 cut(s) 516, 760
BisI GCNGC 5 cut(s) 5, 668, 746, 749, 902
BlnI CCTAGG 1 cut(s) 298
BlsI GCNGC 5 cut(s) 6, 669, 747, 750, 903
BmcAI AGTACT 1 cut(s) 489
Bme1390I CCNGG 2 cut(s) 141, 801
BmiI GGNNCC 2 cut(s) 322, 474
BmrFI CCNGG 2 cut(s) 141, 801
BmsI GCATC 5 cut(s) 56, 120, 232, 319, 791
BpmI CTGGAG 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 298, 610
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 482, 755
Bse118I RCCGGY 1 cut(s) 455
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 801
BseCI ATCGAT 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 298, 610
BseGI GGATG 3 cut(s) 247, 438, 541
BseLI CCNNNNNNNGG 2 cut(s) 482, 755
BseMII CTCAG 2 cut(s) 327, 399
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 353
BseSI GKGCMC 2 cut(s) 323, 475
BseXI GCAGC 2 cut(s) 654, 913
BsgI GTGCAG 1 cut(s) 920
BshFI GGCC 3 cut(s) 128, 297, 745
BshNI GGYRCC 2 cut(s) 320, 472
BshTI ACCGGT 1 cut(s) 455
BshVI ATCGAT 1 cut(s) 29
BsiSI CCGG 2 cut(s) 140, 456
BslI CCNNNNNNNGG 2 cut(s) 482, 755
BsmAI GTCTC 2 cut(s) 191, 548
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 3 cut(s) 128, 297, 745
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 323, 475
Bsp143I GATC 1 cut(s) 565
BspACI CCGC 4 cut(s) 388, 746, 749, 770
BspANI GGCC 3 cut(s) 128, 297, 745
BspCNI CTCAG 2 cut(s) 328, 400
BspDI ATCGAT 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 322, 474
BspPI GGATC 1 cut(s) 573
BspT107I GGYRCC 2 cut(s) 320, 472
BspTNI GGTCTC 1 cut(s) 548
BsrFI RCCGGY 1 cut(s) 455
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 2 cut(s) 298, 610
BssMI GATC 1 cut(s) 565
BssT1I CCWWGG 2 cut(s) 298, 610
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 3 cut(s) 325, 448, 695
BstAPI GCANNNNNTGC 1 cut(s) 788
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 3 cut(s) 336, 408, 569
BstF5I GGATG 3 cut(s) 247, 438, 541
BstKTI GATC 1 cut(s) 568
BstMAI GTCTC 2 cut(s) 191, 548
BstMBI GATC 1 cut(s) 565
BstMWI GCNNNNNNNGC 1 cut(s) 788
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 2 cut(s) 467, 843
BstSCI CCNGG 2 cut(s) 139, 799
BstSFI CTRYAG 2 cut(s) 516, 760
BstSLI GKGCMC 2 cut(s) 323, 475
BstV1I GCAGC 2 cut(s) 654, 913
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
Bsu15I ATCGAT 1 cut(s) 29
BsuRI GGCC 3 cut(s) 128, 297, 745
BsuTUI ATCGAT 1 cut(s) 29
BtsCI GGATG 3 cut(s) 247, 438, 541
Cac8I GCNNGC 1 cut(s) 576
Cfr10I RCCGGY 1 cut(s) 455
ClaI ATCGAT 1 cut(s) 29
Csp6I GTAC 3 cut(s) 144, 488, 855
CspAI ACCGGT 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 5 cut(s) 72, 206, 464, 559, 840
CviQI GTAC 3 cut(s) 144, 488, 855
DdeI CTNAG 3 cut(s) 336, 408, 569
DpnI GATC 1 cut(s) 567
DpnII GATC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 298, 610
Eco31I GGTCTC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 915
EcoRI GAATTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 799
EcoT14I CCWWGG 2 cut(s) 298, 610
ErhI CCWWGG 2 cut(s) 298, 610
FaeI CATG 5 cut(s) 75, 209, 467, 562, 843
FatI CATG 5 cut(s) 71, 205, 463, 558, 839
Fnu4HI GCNGC 5 cut(s) 5, 668, 746, 749, 902
FokI GGATG 3 cut(s) 254, 445, 548
Fsp4HI GCNGC 5 cut(s) 5, 668, 746, 749, 902
FspBI CTAG 3 cut(s) 299, 582, 816
GluI GCNGC 5 cut(s) 5, 668, 746, 749, 902
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 3 cut(s) 128, 297, 745
HapII CCGG 2 cut(s) 140, 456
Hin1II CATG 5 cut(s) 75, 209, 467, 562, 843
HinfI GANTC 2 cut(s) 500, 512
HpaII CCGG 2 cut(s) 140, 456
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 461
Hpy188I TCNGA 2 cut(s) 337, 363
Hpy188III TCNNGA 5 cut(s) 407, 439, 483, 504, 893
Hpy8I GTNNAC 1 cut(s) 461
HpyAV CCTTC 5 cut(s) 34, 486, 580, 625, 637
HpyCH4III ACNGT 3 cut(s) 325, 448, 695
HpyCH4V TGCA 8 cut(s) 111, 170, 245, 562, 670, 728, 791, 901
HpyF10VI GCNNNNNNNGC 1 cut(s) 788
HpyF3I CTNAG 3 cut(s) 336, 408, 569
Hsp92II CATG 5 cut(s) 75, 209, 467, 562, 843
Kzo9I GATC 1 cut(s) 565
Lsp1109I GCAGC 2 cut(s) 654, 913
LweI GCATC 5 cut(s) 56, 120, 232, 319, 791
MaeI CTAG 3 cut(s) 299, 582, 816
MalI GATC 1 cut(s) 567
MboI GATC 1 cut(s) 565
MboII GAAGA 3 cut(s) 42, 557, 640
MfeI CAATTG 1 cut(s) 794
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 2 cut(s) 323, 475
MluCI AATT 9 cut(s) 252, 279, 307, 357, 383, 525, 656, 687, 794
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 9 cut(s) 112, 118, 331, 343, 409, 535, 655, 735, 862
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 904
MspI CCGG 2 cut(s) 140, 456
MspR9I CCNGG 2 cut(s) 141, 801
MunI CAATTG 1 cut(s) 794
Mva1269I GAATGC 1 cut(s) 82
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 1 cut(s) 788
NciI CCSGG 1 cut(s) 141
NdeII GATC 1 cut(s) 565
NlaIII CATG 5 cut(s) 75, 209, 467, 562, 843
NlaIV GGNNCC 2 cut(s) 322, 474
NspI RCATGY 2 cut(s) 467, 843
PciI ACATGT 1 cut(s) 839
PctI GAATGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 512
PinAI ACCGGT 1 cut(s) 455
PkrI GCNGC 5 cut(s) 6, 669, 747, 750, 903
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PscI ACATGT 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 799
PspGI CCWGG 1 cut(s) 799
PspN4I GGNNCC 2 cut(s) 322, 474
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 904
RsaI GTAC 3 cut(s) 145, 489, 856
RsaNI GTAC 3 cut(s) 144, 488, 855
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 5 cut(s) 5, 668, 746, 749, 902
Sau3AI GATC 1 cut(s) 565
ScaI AGTACT 1 cut(s) 489
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 2 cut(s) 141, 801
SduI GDGCHC 2 cut(s) 323, 475
SfaNI GCATC 5 cut(s) 56, 120, 232, 319, 791
SfcI CTRYAG 2 cut(s) 516, 760
SmiMI CAYNNNNRTG 1 cut(s) 210
Sse9I AATT 9 cut(s) 252, 279, 307, 357, 383, 525, 656, 687, 794
SsiI CCGC 4 cut(s) 388, 746, 749, 770
SspI AATATT 1 cut(s) 175
SspMI CTAG 3 cut(s) 299, 582, 816
StyD4I CCNGG 2 cut(s) 139, 799
StyI CCWWGG 2 cut(s) 298, 610
TaaI ACNGT 3 cut(s) 325, 448, 695
TaqI TCGA 3 cut(s) 29, 311, 440
TasI AATT 9 cut(s) 252, 279, 307, 357, 383, 525, 656, 687, 794
TatI WGTACW 2 cut(s) 487, 854
TauI GCSGC 2 cut(s) 748, 751
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 3 cut(s) 4, 667, 901
TspDTI ATGAA 4 cut(s) 42, 468, 525, 726
XapI RAATTY 2 cut(s) 307, 357
XceI RCATGY 2 cut(s) 467, 843
XmaJI CCTAGG 1 cut(s) 298
XspI CTAG 3 cut(s) 299, 582, 816
ZrmI AGTACT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.