Rmu_sc0000151.1_g000009
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000151.1
OG0000240
Physical Location & Seq
Reverse (-)
26112 .. 29417
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000151.1_g000009.1.cds

Sequence Viewer

Length: 1005 bp
atgggaaagaagaaatccacttgtactgaaagtgagggatctggaaaacaaaaggccacatggccggatgaggtagtagctatattttgtgatatagttgttaaggaagtggccaaaggaaacaaacctggtactcattttgataaaaatggatggtcaaatgttatcaaggcctttaaggagttaaccggaagggattatgataaaaggcaattgaaaaataagtgggattcacttaaaaatgattggaaattgtggagttcactattgcatagggaaactggtattagatgggatccggctaggaagactgtcgatgcacctgctgagtggtgggaatccaaaattcagattaatccagagtatcgcaaatttcgtgacgttggaattagtccggaaatgatggctgtttatgataacatgtttaggggtagcacagccctaggtcactctgtcatgattccctcagctactatagatattgaagaggtggtggaggattctgagcataatgacatttctggagatgatgaggagatggaccagcaaggtcaaaccaataggaatacacaagagcgttttcaacgttctggtgagacggttagtagatattttgatataatgctcaagattttctataatatggcgaaagtgctcataaagccagaggatcccgaatttacgagcatcccaaatgaaattttaaatgactcaagatacatgcctcattttaaggattgtattggcgctattgatggtgttcatgttcaagcttcgatttctccatttgaccaagtgccatacattggccgaaaaggaacactatgcaaaggggccgacctatttgacatgattcctgaggagtacacgtttaaggagattattggaaagatgggacctattcctagatcttattcagcagttcatcttcctgcatatttgctgaacaatgctgagaagtacaagtacctgctgcctggaaactgcaagagggaaaatggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

334

Amino Acids

38.22

Weight (kDa)

5.9

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 2 cut(s) 331, 978
AccB7I CCANNNNNTGG 1 cut(s) 806
AccIII TCCGGA 1 cut(s) 394
AclI AACGTT 1 cut(s) 586
AclWI GGATC 5 cut(s) 46, 290, 303, 665, 678
AcoI YGGCCR 3 cut(s) 62, 111, 808
AcsI RAATTY 4 cut(s) 345, 371, 677, 699
AfaI GTAC 5 cut(s) 25, 133, 866, 962, 968
AfiI CCNNNNNNNGG 1 cut(s) 806
AflIII ACRYGT 2 cut(s) 420, 867
AgsI TTSAA 4 cut(s) 217, 485, 584, 770
AjnI CCWGG 2 cut(s) 127, 976
AluBI AGCT 3 cut(s) 80, 470, 773
AluI AGCT 3 cut(s) 80, 470, 773
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 1 cut(s) 590
AlwI GGATC 5 cut(s) 46, 290, 303, 665, 678
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 6 cut(s) 54, 62, 111, 171, 808, 834
ApeKI GCWGC 1 cut(s) 973
ApoI RAATTY 4 cut(s) 345, 371, 677, 699
AseI ATTAAT 1 cut(s) 354
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 3 cut(s) 541, 834, 896
AsuHPI GGTGA 1 cut(s) 605
AvaII GGWCC 2 cut(s) 541, 896
AvrII CCTAGG 1 cut(s) 442
AxyI CCTNAGG 1 cut(s) 858
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 2 cut(s) 295, 670
BarI GAAGNNNNNNTAC 2 cut(s) 950, 982
BbsI GAAGAC 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 657
BbvCI CCTCAGC 1 cut(s) 466
BbvI GCAGC 1 cut(s) 960
BccI CCATC 6 cut(s) 147, 285, 397, 532, 749, 886
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 129, 978
BcoDI GTCTC 1 cut(s) 590
BfaI CTAG 3 cut(s) 303, 443, 906
BfmI CTRYAG 1 cut(s) 474
BfoI RGCGCY 1 cut(s) 750
BfuAI ACCTGC 2 cut(s) 331, 978
BglII AGATCT 1 cut(s) 908
BisI GCNGC 1 cut(s) 974
BlnI CCTAGG 1 cut(s) 442
BlsI GCNGC 1 cut(s) 975
Bme1390I CCNGG 2 cut(s) 129, 978
Bme18I GGWCC 2 cut(s) 541, 896
BmgT120I GGNCC 3 cut(s) 541, 834, 896
BmiI GGNNCC 4 cut(s) 297, 672, 835, 897
BmrFI CCNGG 2 cut(s) 129, 978
BmsI GCATC 2 cut(s) 307, 696
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 466
BpuEI CTTGAG 2 cut(s) 611, 697
BsaJI CCNNGG 1 cut(s) 442
BsaWI WCCGGW 2 cut(s) 188, 394
BsaXI ACNNNNNCTCC 2 cut(s) 854, 884
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse1I ACTGG 1 cut(s) 286
Bse21I CCTNAGG 1 cut(s) 858
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 129, 978
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 3 cut(s) 73, 158, 687
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMII CTCAG 5 cut(s) 318, 480, 495, 849, 945
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 548, 875
BseXI GCAGC 1 cut(s) 960
BshFI GGCC 6 cut(s) 56, 64, 113, 173, 810, 836
BsiHKAI GWGCWC 1 cut(s) 657
BsiSI CCGG 4 cut(s) 65, 189, 299, 395
BslFI GGGAC 1 cut(s) 909
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 1 cut(s) 590
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 1 cut(s) 909
BsnI GGCC 6 cut(s) 56, 64, 113, 173, 810, 836
Bsp1286I GDGCHC 1 cut(s) 657
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 4 cut(s) 38, 295, 670, 908
BspANI GGCC 6 cut(s) 56, 64, 113, 173, 810, 836
BspCNI CTCAG 5 cut(s) 319, 479, 496, 850, 946
BspEI TCCGGA 1 cut(s) 394
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 4 cut(s) 297, 672, 835, 897
BspMI ACCTGC 2 cut(s) 331, 978
BspPI GGATC 5 cut(s) 46, 290, 303, 665, 678
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 4 cut(s) 38, 295, 670, 908
BssT1I CCWWGG 1 cut(s) 442
Bst2UI CCWGG 2 cut(s) 129, 978
Bst4CI ACNGT 2 cut(s) 313, 601
Bst6I CTCTTC 1 cut(s) 480
BstDEI CTNAG 5 cut(s) 327, 466, 504, 858, 954
BstF5I GGATG 3 cut(s) 73, 158, 687
BstH2I RGCGCY 1 cut(s) 750
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 4 cut(s) 41, 298, 673, 911
BstMAI GTCTC 1 cut(s) 590
BstMBI GATC 4 cut(s) 38, 295, 670, 908
BstMWI GCNNNNNNNGC 1 cut(s) 661
BstNI CCWGG 2 cut(s) 129, 978
BstNSI RCATGY 2 cut(s) 424, 724
BstSCI CCNGG 2 cut(s) 127, 976
BstSFI CTRYAG 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 960
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 4 cut(s) 38, 295, 670, 908
BstYI RGATCY 4 cut(s) 38, 295, 670, 908
Bsu36I CCTNAGG 1 cut(s) 858
BsuRI GGCC 6 cut(s) 56, 64, 113, 173, 810, 836
BtsCI GGATG 3 cut(s) 73, 158, 687
BveI ACCTGC 2 cut(s) 331, 978
CciI TCATGA 1 cut(s) 456
CfoI GCGC 1 cut(s) 749
Cfr13I GGNCC 3 cut(s) 541, 834, 896
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 5 cut(s) 24, 132, 865, 961, 967
CviAII CATG 6 cut(s) 60, 421, 457, 721, 764, 850
CviQI GTAC 5 cut(s) 24, 132, 865, 961, 967
DdeI CTNAG 5 cut(s) 327, 466, 504, 858, 954
DpnI GATC 4 cut(s) 40, 297, 672, 910
DpnII GATC 4 cut(s) 38, 295, 670, 908
DraI TTTAAA 1 cut(s) 705
EaeI YGGCCR 3 cut(s) 62, 111, 808
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 442
Eco147I AGGCCT 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 541, 896
Eco81I CCTNAGG 1 cut(s) 858
EcoO109I RGGNCCY 1 cut(s) 896
EcoRII CCWGG 2 cut(s) 127, 976
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 590
FaeI CATG 6 cut(s) 63, 424, 460, 724, 767, 853
FaqI GGGAC 1 cut(s) 909
FatI CATG 6 cut(s) 59, 420, 456, 720, 763, 849
Fnu4HI GCNGC 1 cut(s) 974
FokI GGATG 3 cut(s) 80, 165, 674
Fsp4HI GCNGC 1 cut(s) 974
FspBI CTAG 3 cut(s) 303, 443, 906
GlaI GCGC 1 cut(s) 748
GluI GCNGC 1 cut(s) 974
GsuI CTGGAG 1 cut(s) 543
HaeII RGCGCY 1 cut(s) 750
HaeIII GGCC 6 cut(s) 56, 64, 113, 173, 810, 836
HapII CCGG 4 cut(s) 65, 189, 299, 395
HhaI GCGC 1 cut(s) 749
Hin1II CATG 6 cut(s) 63, 424, 460, 724, 767, 853
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 771
HinfI GANTC 6 cut(s) 230, 338, 460, 500, 710, 853
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 4 cut(s) 65, 189, 299, 395
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 3 cut(s) 186, 263, 867
Hpy188I TCNGA 2 cut(s) 351, 505
Hpy8I GTNNAC 3 cut(s) 186, 263, 867
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 313, 601
HpyCH4IV ACGT 3 cut(s) 381, 586, 869
HpyCH4V TGCA 5 cut(s) 271, 320, 828, 935, 987
HpyF10VI GCNNNNNNNGC 1 cut(s) 661
HpyF3I CTNAG 5 cut(s) 327, 466, 504, 858, 954
HpySE526I ACGT 3 cut(s) 381, 586, 869
Hsp92II CATG 6 cut(s) 63, 424, 460, 724, 767, 853
HspAI GCGC 1 cut(s) 747
Kpn2I TCCGGA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 4 cut(s) 38, 295, 670, 908
Lsp1109I GCAGC 1 cut(s) 960
LweI GCATC 2 cut(s) 307, 696
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 3 cut(s) 303, 443, 906
MaeII ACGT 3 cut(s) 381, 586, 869
MaeIII GTNAC 2 cut(s) 377, 446
MalI GATC 4 cut(s) 40, 297, 672, 910
MboI GATC 4 cut(s) 38, 295, 670, 908
MboII GAAGA 4 cut(s) 22, 319, 497, 920
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 4 cut(s) 38, 295, 670, 908
MhlI GDGCHC 1 cut(s) 657
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 7 cut(s) 212, 251, 345, 371, 387, 677, 699
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 364
Mox20I TGGCCA 1 cut(s) 113
MroI TCCGGA 1 cut(s) 394
MscI TGGCCA 1 cut(s) 113
MseI TTAA 8 cut(s) 102, 177, 185, 237, 354, 704, 732, 873
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 4 cut(s) 65, 189, 299, 395
MspR9I CCNGG 2 cut(s) 129, 978
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 2 cut(s) 129, 978
MwoI GCNNNNNNNGC 1 cut(s) 661
NdeII GATC 4 cut(s) 38, 295, 670, 908
NlaIII CATG 6 cut(s) 63, 424, 460, 724, 767, 853
NlaIV GGNNCC 4 cut(s) 297, 672, 835, 897
NmuCI GTSAC 2 cut(s) 377, 446
NspI RCATGY 2 cut(s) 424, 724
PagI TCATGA 1 cut(s) 456
PaqCI CACCTGC 1 cut(s) 331
PceI AGGCCT 1 cut(s) 173
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 373
PfeI GAWTC 5 cut(s) 230, 338, 460, 500, 853
PflMI CCANNNNNTGG 1 cut(s) 806
PkrI GCNGC 1 cut(s) 975
PleI GAGTC 1 cut(s) 704
PpsI GAGTC 1 cut(s) 704
PpuMI RGGWCCY 1 cut(s) 896
PscI ACATGT 1 cut(s) 420
PshBI ATTAAT 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 586
Psp5II RGGWCCY 1 cut(s) 896
Psp6I CCWGG 2 cut(s) 127, 976
PspGI CCWGG 2 cut(s) 127, 976
PspN4I GGNNCC 4 cut(s) 297, 672, 835, 897
PspPI GGNCC 3 cut(s) 541, 834, 896
PspPPI RGGWCCY 1 cut(s) 896
PsuI RGATCY 4 cut(s) 38, 295, 670, 908
RsaI GTAC 5 cut(s) 25, 133, 866, 962, 968
RsaNI GTAC 5 cut(s) 24, 132, 865, 961, 967
SaqAI TTAA 8 cut(s) 102, 177, 185, 237, 354, 704, 732, 873
SatI GCNGC 1 cut(s) 974
Sau3AI GATC 4 cut(s) 38, 295, 670, 908
Sau96I GGNCC 3 cut(s) 541, 834, 896
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 2 cut(s) 129, 978
SduI GDGCHC 1 cut(s) 657
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 2 cut(s) 307, 696
SfcI CTRYAG 1 cut(s) 474
SinI GGWCC 2 cut(s) 541, 896
SmlI CTYRAG 2 cut(s) 626, 712
SmoI CTYRAG 2 cut(s) 626, 712
Sse9I AATT 7 cut(s) 212, 251, 345, 371, 387, 677, 699
SseBI AGGCCT 1 cut(s) 173
SspMI CTAG 3 cut(s) 303, 443, 906
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 2 cut(s) 127, 976
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 2 cut(s) 313, 601
TaiI ACGT 3 cut(s) 384, 589, 872
TaqI TCGA 2 cut(s) 315, 776
TasI AATT 7 cut(s) 212, 251, 345, 371, 387, 677, 699
TatI WGTACW 3 cut(s) 23, 864, 960
TfiI GAWTC 5 cut(s) 230, 338, 460, 500, 853
Tru1I TTAA 8 cut(s) 102, 177, 185, 237, 354, 704, 732, 873
Tru9I TTAA 8 cut(s) 102, 177, 185, 237, 354, 704, 732, 873
TseFI GTSAC 2 cut(s) 377, 446
TseI GCWGC 1 cut(s) 973
Tsp45I GTSAC 2 cut(s) 377, 446
TspDTI ATGAA 3 cut(s) 711, 752, 914
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 541, 896
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 4 cut(s) 345, 371, 677, 699
XceI RCATGY 2 cut(s) 424, 724
XmaJI CCTAGG 1 cut(s) 442
XspI CTAG 3 cut(s) 303, 443, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.