Prupe.6G155900_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000240
Physical Location & Seq
Reverse (-)
13709130 .. 13709721
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G155900.1

Sequence Viewer

Length: 390 bp
ATGGTGAAGAATAATAATGTGGCTAGTGGATCACAAGTTTCGGCTGTATGGAATAATCAGAATACAACTATAGTTTGTGACATGTGTATCAAGGAAGTGGAGGCAGGCAATCGTCCTGAACAATGGAAAATATGGAAAGAACTAATCGGAAAGGAAACTGGTCTTGGGTGGAATTCCAAACTTAGGACTATTGATTCTTCTGATAAATGGTGGCATAACAAAATTGAGATAAATCCCAAATATGTAAAATTAAATAGAAAGGGTATTAGTCCTAATATGGAAGAGAAGTTTGATAGAATGTTCATGAACACCACCTCTACTGGTGACCATGCTTGGGCACCTTCATCTGGTGTACTTTCAACTCATCTAGTGTACTTCCAAACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

130

Amino Acids

14.79

Weight (kDa)

8.93

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 172
AfaI GTAC 2 cut(s) 354, 374
AfiI CCNNNNNNNGG 3 cut(s) 183, 334, 347
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 1 cut(s) 360
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AlwI GGATC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 16, 335
BaeGI GKGCMC 1 cut(s) 340
BaeI ACNNNNGTAYC 2 cut(s) 70, 103
BanI GGYRCC 1 cut(s) 337
BfaI CTAG 2 cut(s) 24, 368
BfmI CTRYAG 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 339
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 334, 347
Bse1I ACTGG 2 cut(s) 163, 325
BseLI CCNNNNNNNGG 3 cut(s) 183, 334, 347
BseNI ACTGG 2 cut(s) 163, 325
BseSI GKGCMC 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 337
BslI CCNNNNNNNGG 3 cut(s) 183, 334, 347
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 1 cut(s) 29
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 337
BsrI ACTGG 2 cut(s) 163, 325
BssMI GATC 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 182
BstEII GGTNACC 1 cut(s) 323
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 85
BstPI GGTNACC 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 303
Csp6I GTAC 2 cut(s) 353, 373
CviAII CATG 3 cut(s) 82, 304, 329
CviJI RGCY 2 cut(s) 23, 44
CviKI_1 RGCY 2 cut(s) 23, 44
CviQI GTAC 2 cut(s) 353, 373
DdeI CTNAG 1 cut(s) 182
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco91I GGTNACC 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 172
FaeI CATG 3 cut(s) 85, 307, 332
FaiI YATR 9 cut(s) 49, 71, 83, 133, 216, 243, 278, 305, 330
FatI CATG 3 cut(s) 81, 303, 328
FspBI CTAG 2 cut(s) 24, 368
Hin1II CATG 3 cut(s) 85, 307, 332
HinfI GANTC 1 cut(s) 194
HphI GGTGA 2 cut(s) 16, 335
Hpy166II GTNNAC 2 cut(s) 353, 373
Hpy188I TCNGA 3 cut(s) 60, 149, 202
Hpy188III TCNNGA 2 cut(s) 116, 304
Hpy8I GTNNAC 2 cut(s) 353, 373
HpyAV CCTTC 1 cut(s) 351
HpyF3I CTNAG 1 cut(s) 182
Hsp92II CATG 3 cut(s) 85, 307, 332
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 5 cut(s) 90, 129, 144, 306, 333
MaeI CTAG 2 cut(s) 24, 368
MaeIII GTNAC 2 cut(s) 77, 323
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 3 cut(s) 19, 189, 293
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 4 cut(s) 172, 222, 248, 385
MnlI CCTC 2 cut(s) 94, 325
MseI TTAA 1 cut(s) 251
NdeII GATC 1 cut(s) 29
NlaIII CATG 3 cut(s) 85, 307, 332
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 2 cut(s) 77, 323
NspI RCATGY 1 cut(s) 85
PagI TCATGA 1 cut(s) 303
PciI ACATGT 1 cut(s) 81
PfeI GAWTC 1 cut(s) 194
PscI ACATGT 1 cut(s) 81
PspEI GGTNACC 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 339
RsaI GTAC 2 cut(s) 354, 374
RsaNI GTAC 2 cut(s) 353, 373
SaqAI TTAA 1 cut(s) 251
Sau3AI GATC 1 cut(s) 29
SduI GDGCHC 1 cut(s) 340
SetI ASST 2 cut(s) 317, 343
SfcI CTRYAG 1 cut(s) 69
Sse9I AATT 4 cut(s) 172, 222, 248, 385
SspMI CTAG 2 cut(s) 24, 368
TasI AATT 4 cut(s) 172, 222, 248, 385
TatI WGTACW 2 cut(s) 352, 372
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseFI GTSAC 2 cut(s) 77, 323
Tsp45I GTSAC 2 cut(s) 77, 323
TspDTI ATGAA 3 cut(s) 292, 320, 333
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 85
XspI CTAG 2 cut(s) 24, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.