Rw1G014470
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000240
Physical Location & Seq
Forward (+)
32260006 .. 32261051
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014470.1

Sequence Viewer

Length: 963 bp
ATGGGAAGGAAGAATACTAATGAAATTGGGGGAAGTGGATCACAAGTTAAAGCTGTATGGAATGATTATAATGTATCCAAATTTTGTGATCTGTGCATCAAGTTGGTGGATGCTGGACGTCGTCCTAATACTCATTTTGACAGAGAAGGATGGGAGAGTTTGGTAGTAAACTTCAGTAAAGAAACTGGCAATAACTATGATAAAACTCAATTGAAGAATAAGTGGGATTCACTTAAAATTGAATGGAAGTTGTGGAAAGAACTCGTTGGCAAGGAAACTGGTTTAGGGTGGAATCCTAGCAAGGGCACTGTTGATGCACCTGCCGAATGGTGGCATAGTAAGATTCAGGTCAATCCCGAATATGCAAAACTGCGTAAAAAAGGTCTTAATCCTGAATTGGAGGAGAAGCTAGATAGAATGTTTTCAAACATTATAGCCACTGGTGAACATGCTTGGGCACCTTCTTGTGGGAACCTTCCATCTCCAAAATCAGACATATGCAAGGATGATGTCATTCCACTTGAAGGCAGTGATGATTCGGTGGATTTTACTCCAATAGAAAGAAGTGGGGGTAAGGAAGGTGTTTCAAGGAGAGGGAAAAAAAGATTGATTGATGAAGCTGAATTACAAGCTACAGCGGAAAAGAAACCTAAAGGACCCATTGTTTTAGGCAAGCAGAAGGTGGGAGGTGCTACAAAGTTATCTCAACAAATAGATCGTTTTATTAATGTAGTTGAGAATAAGAGTGCTGGAACATCAAACAGTGTGAAAAGTGCAGAAAGCTATACTATTGCTGAAGCAATGAAAGCACTTGAGTCTGTCCCTTATTGCGAGCTTGGGAGTACTTTGTGGTTGTTTGCAACTCGACTTTTTTTGAATAAAGAAAAGAGAGAGATGTTTGCCACCATGAAAGATGATGTAATTAAGCTTCAATGGCTTCAGTATGAATATGCTGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

320

Amino Acids

36.05

Weight (kDa)

8.59

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 20 - 112 1.6e-20 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AarI CACCTGC 1 cut(s) 328
AatII GACGTC 1 cut(s) 121
Acc36I ACCTGC 1 cut(s) 328
AccB1I GGYRCC 1 cut(s) 457
AciI CCGC 1 cut(s) 638
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 80
AcuI CTGAAG 3 cut(s) 157, 816, 923
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 1 cut(s) 844
AfiI CCNNNNNNNGG 4 cut(s) 302, 330, 467, 524
AgsI TTSAA 7 cut(s) 214, 242, 426, 524, 588, 877, 932
AluBI AGCT 7 cut(s) 53, 409, 620, 632, 783, 835, 928
AluI AGCT 7 cut(s) 53, 409, 620, 632, 783, 835, 928
AlwI GGATC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 80
AseI ATTAAT 1 cut(s) 726
Asp700I GAANNNNTTC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 656
BaeGI GKGCMC 2 cut(s) 308, 460
BanI GGYRCC 1 cut(s) 457
BarI GAAGNNNNNNTAC 5 cut(s) 30, 609, 641, 912, 944
BccI CCATC 2 cut(s) 144, 487
BciVI GTATCC 1 cut(s) 85
BfaI CTAG 2 cut(s) 297, 410
BfmI CTRYAG 1 cut(s) 633
BfuAI ACCTGC 1 cut(s) 328
BfuI GTATCC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 844
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 3 cut(s) 459, 473, 658
BmsI GCATC 3 cut(s) 100, 105, 304
BpuEI CTTGAG 1 cut(s) 833
BsaHI GRCGYC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 330, 467, 524
Bse1I ACTGG 3 cut(s) 190, 283, 445
Bse3DI GCAATG 1 cut(s) 807
BseGI GGATG 3 cut(s) 115, 155, 511
BseLI CCNNNNNNNGG 4 cut(s) 302, 330, 467, 524
BseMI GCAATG 1 cut(s) 807
BseNI ACTGG 3 cut(s) 190, 283, 445
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 2 cut(s) 308, 460
BsgI GTGCAG 1 cut(s) 795
BshNI GGYRCC 1 cut(s) 457
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 4 cut(s) 302, 330, 467, 524
BsmFI GGGAC 1 cut(s) 806
Bsp1286I GDGCHC 2 cut(s) 308, 460
Bsp143I GATC 3 cut(s) 38, 88, 715
BspACI CCGC 1 cut(s) 638
BspLI GGNNCC 3 cut(s) 459, 473, 658
BspMI ACCTGC 1 cut(s) 328
BspPI GGATC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 807
BsrI ACTGG 3 cut(s) 190, 283, 445
BssMI GATC 3 cut(s) 38, 88, 715
BssNI GRCGYC 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 310, 764
BstACI GRCGYC 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 674, 833
BstF5I GGATG 3 cut(s) 115, 155, 511
BstKTI GATC 3 cut(s) 41, 91, 718
BstMBI GATC 3 cut(s) 38, 88, 715
BstMWI GCNNNNNNNGC 2 cut(s) 806, 934
BstNSI RCATGY 1 cut(s) 452
BstSFI CTRYAG 1 cut(s) 633
BstSLI GKGCMC 2 cut(s) 308, 460
BsuI GTATCC 1 cut(s) 85
BtsCI GGATG 3 cut(s) 115, 155, 511
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 4 cut(s) 306, 438, 535, 769
BveI ACCTGC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 674, 833
Cfr13I GGNCC 1 cut(s) 656
Csp6I GTAC 1 cut(s) 843
CviAII CATG 2 cut(s) 449, 907
CviJI RGCY 9 cut(s) 53, 409, 437, 620, 632, 783, 835, 928, 937
CviKI_1 RGCY 9 cut(s) 53, 409, 437, 620, 632, 783, 835, 928, 937
CviQI GTAC 1 cut(s) 843
DpnI GATC 3 cut(s) 40, 90, 717
DpnII GATC 3 cut(s) 38, 88, 715
Eco47I GGWCC 1 cut(s) 656
Eco57I CTGAAG 3 cut(s) 157, 816, 923
EcoO109I RGGNCCY 1 cut(s) 656
FaeI CATG 2 cut(s) 452, 910
FaqI GGGAC 1 cut(s) 806
FatI CATG 2 cut(s) 448, 906
FauNDI CATATG 1 cut(s) 497
FokI GGATG 3 cut(s) 122, 162, 518
FspBI CTAG 2 cut(s) 297, 410
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 2 cut(s) 452, 910
HindIII AAGCTT 1 cut(s) 926
HinfI GANTC 5 cut(s) 227, 292, 343, 536, 815
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 169, 446
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 2 cut(s) 356, 392
Hpy8I GTNNAC 2 cut(s) 169, 446
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 6 cut(s) 140, 471, 485, 518, 572, 673
HpyCH4III ACNGT 2 cut(s) 310, 764
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 6 cut(s) 96, 317, 365, 501, 776, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 806, 934
HpySE526I ACGT 1 cut(s) 118
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 2 cut(s) 452, 910
Kzo9I GATC 3 cut(s) 38, 88, 715
LpnPI CCDG 8 cut(s) 99, 171, 264, 332, 333, 405, 426, 735
LweI GCATC 3 cut(s) 100, 105, 304
MaeI CTAG 2 cut(s) 297, 410
MaeII ACGT 1 cut(s) 118
MalI GATC 3 cut(s) 40, 90, 717
MboI GATC 3 cut(s) 38, 88, 715
MboII GAAGA 2 cut(s) 22, 226
MfeI CAATTG 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 308, 460
MluCI AATT 7 cut(s) 24, 80, 209, 237, 395, 623, 921
MlyI GAGTC 1 cut(s) 824
MnlI CCTC 3 cut(s) 394, 587, 680
MroXI GAANNNNTTC 1 cut(s) 421
MseI TTAA 5 cut(s) 48, 234, 387, 726, 924
MspA1I CMGCKG 1 cut(s) 638
MunI CAATTG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 806, 934
NdeI CATATG 1 cut(s) 497
NdeII GATC 3 cut(s) 38, 88, 715
NlaIII CATG 2 cut(s) 452, 910
NlaIV GGNNCC 3 cut(s) 459, 473, 658
NspI RCATGY 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 4 cut(s) 227, 292, 343, 536
PflFI GACNNNGTC 1 cut(s) 120
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 656
PshBI ATTAAT 1 cut(s) 726
PsiI TTATAA 1 cut(s) 69
Psp5II RGGWCCY 1 cut(s) 656
PspN4I GGNNCC 3 cut(s) 459, 473, 658
PspPI GGNCC 1 cut(s) 656
PspPPI RGGWCCY 1 cut(s) 656
PsyI GACNNNGTC 1 cut(s) 120
RsaI GTAC 1 cut(s) 844
RsaNI GTAC 1 cut(s) 843
SaqAI TTAA 5 cut(s) 48, 234, 387, 726, 924
Sau3AI GATC 3 cut(s) 38, 88, 715
Sau96I GGNCC 1 cut(s) 656
ScaI AGTACT 1 cut(s) 844
SchI GAGTC 1 cut(s) 824
SduI GDGCHC 2 cut(s) 308, 460
SfaNI GCATC 3 cut(s) 100, 105, 304
SfcI CTRYAG 1 cut(s) 633
SinI GGWCC 1 cut(s) 656
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
Sse9I AATT 7 cut(s) 24, 80, 209, 237, 395, 623, 921
SsiI CCGC 1 cut(s) 638
SspMI CTAG 2 cut(s) 297, 410
TaaI ACNGT 2 cut(s) 310, 764
TaiI ACGT 1 cut(s) 121
TaqI TCGA 1 cut(s) 865
TasI AATT 7 cut(s) 24, 80, 209, 237, 395, 623, 921
TatI WGTACW 1 cut(s) 842
TfiI GAWTC 4 cut(s) 227, 292, 343, 536
Tru1I TTAA 5 cut(s) 48, 234, 387, 726, 924
Tru9I TTAA 5 cut(s) 48, 234, 387, 726, 924
TscAI CASTG 4 cut(s) 313, 445, 535, 769
TspDTI ATGAA 5 cut(s) 36, 630, 818, 923, 960
TspRI CASTG 4 cut(s) 313, 445, 535, 769
Tth111I GACNNNGTC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 656
VspI ATTAAT 1 cut(s) 726
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 421
XspI CTAG 2 cut(s) 297, 410
ZraI GACGTC 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.