Rorug04G0059600
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000240
Physical Location & Seq
Forward (+)
9289690 .. 9290289
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0059600.1

Sequence Viewer

Length: 600 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAAGCGGAGCAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTGCCAATTCATCTGCACCTGCTTCTGCTTCTTCTGCTAGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

199

Amino Acids

21.82

Weight (kDa)

9.2

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 1.8e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 361
Acc36I ACCTGC 3 cut(s) 78, 160, 361
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 3 cut(s) 82, 516, 595
AclWI GGATC 2 cut(s) 188, 430
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 2 cut(s) 220, 443
AleI CACNNNNGTG 1 cut(s) 525
AluBI AGCT 4 cut(s) 130, 193, 550, 575
AluI AGCT 4 cut(s) 130, 193, 550, 575
Alw21I GWGCWC 1 cut(s) 552
AlwI GGATC 2 cut(s) 188, 430
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 482
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 300
BanII GRGCYC 2 cut(s) 256, 552
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 394, 500
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 361
BisI GCNGC 2 cut(s) 51, 595
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 2 cut(s) 52, 596
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 3 cut(s) 6, 155, 593
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 107, 566
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 588
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 588
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMII CTCAG 1 cut(s) 565
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 552
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 589
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 552
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 5 cut(s) 106, 180, 210, 308, 422
Bsp1720I GCTNAGC 1 cut(s) 551
BspACI CCGC 3 cut(s) 82, 516, 595
BspCNI CTCAG 1 cut(s) 564
BspEI TCCGGA 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 6, 155, 593
BspMI ACCTGC 3 cut(s) 78, 160, 361
BspPI GGATC 2 cut(s) 188, 430
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 106, 180, 210, 308, 422
Bst4CI ACNGT 2 cut(s) 163, 524
BstDEI CTNAG 1 cut(s) 551
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 5 cut(s) 109, 183, 213, 311, 425
BstMBI GATC 5 cut(s) 106, 180, 210, 308, 422
BstMWI GCNNNNNNNGC 3 cut(s) 79, 368, 561
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 180, 422
BstYI RGATCY 2 cut(s) 180, 422
BtsCI GGATG 2 cut(s) 37, 292
BveI ACCTGC 3 cut(s) 78, 160, 361
Cfr13I GGNCC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 202
CviAII CATG 7 cut(s) 70, 293, 301, 433, 463, 467, 490
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 551
DpnI GATC 5 cut(s) 108, 182, 212, 310, 424
DpnII GATC 5 cut(s) 106, 180, 210, 308, 422
Ecl136II GAGCTC 1 cut(s) 550
Eco24I GRGCYC 2 cut(s) 256, 552
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 468
EcoT38I GRGCYC 2 cut(s) 256, 552
FaeI CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 292, 300, 432, 462, 466, 489
Fnu4HI GCNGC 2 cut(s) 51, 595
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 552
Fsp4HI GCNGC 2 cut(s) 51, 595
FspBI CTAG 1 cut(s) 372
GluI GCNGC 2 cut(s) 51, 595
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 54, 589
Hin1II CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 2 cut(s) 94, 117
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 2 cut(s) 54, 589
HphI GGTGA 2 cut(s) 335, 482
Hpy166II GTNNAC 3 cut(s) 244, 279, 391
Hpy188I TCNGA 3 cut(s) 111, 286, 505
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 589
Hpy8I GTNNAC 3 cut(s) 244, 279, 391
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 2 cut(s) 163, 524
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 350, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 368, 561
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
Kpn2I TCCGGA 1 cut(s) 588
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 106, 180, 210, 308, 422
LmnI GCTCC 3 cut(s) 84, 127, 591
LpnPI CCDG 9 cut(s) 29, 67, 73, 155, 203, 297, 366, 561, 574
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 518
MalI GATC 5 cut(s) 108, 182, 212, 310, 424
MboI GATC 5 cut(s) 106, 180, 210, 308, 422
MboII GAAGA 4 cut(s) 280, 283, 357, 505
MflI RGATCY 2 cut(s) 180, 422
MhlI GDGCHC 3 cut(s) 256, 300, 552
MluCI AATT 1 cut(s) 340
MnlI CCTC 8 cut(s) 22, 29, 131, 171, 462, 466, 503, 559
Mph1103I ATGCAT 1 cut(s) 468
MroI TCCGGA 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 1 cut(s) 390
MslI CAYNNNNRTG 1 cut(s) 525
MspA1I CMGCKG 2 cut(s) 193, 597
MspI CCGG 2 cut(s) 54, 589
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 79, 368, 561
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 106, 180, 210, 308, 422
NlaIII CATG 7 cut(s) 73, 296, 304, 436, 466, 470, 493
NlaIV GGNNCC 3 cut(s) 6, 155, 593
NmuCI GTSAC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 525
PaqCI CACCTGC 2 cut(s) 78, 361
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 94, 117
PkrI GCNGC 2 cut(s) 52, 596
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 593
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 422
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 525
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 1 cut(s) 390
SatI GCNGC 2 cut(s) 51, 595
Sau3AI GATC 5 cut(s) 106, 180, 210, 308, 422
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 552
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 2 cut(s) 122, 545
SmoI CTYRAG 2 cut(s) 122, 545
Sse9I AATT 1 cut(s) 340
SsiI CCGC 3 cut(s) 82, 516, 595
SspMI CTAG 1 cut(s) 372
SstI GAGCTC 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 163, 524
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 597
TfiI GAWTC 2 cut(s) 94, 117
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 4 cut(s) 281, 333, 443, 506
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.