Rmu_ssc0000164.1_g000007
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000164.1
OG0000240
Physical Location & Seq
Forward (+)
25291 .. 27947
2657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000164.1_g000007.1.cds

Sequence Viewer

Length: 633 bp
atggaggtatttggcttgggattgagatttgatggtaatggcgtttttgaagaaggttttgagcagggtttgcagggagttcatggttttggggttttgcactttttgggttttgattttgggggcatagtggtggcgggtgtagagggcggccataaagaggctgaggaagacgatgaagagcataactccgccaccatcgaactcaccgagatcaatctagagtattgcaaattttgcgacgtgggaattagtcctgacttgatggctgtttatgataacatgttcaagggtagtacaaccctaggtcacaatgtcatgattctctcagctactatagatattgaagaggttgtggaggattctgagcataatttaatttctgaagatgatgaagaggattctgagcaagttgaaagtaggagtacagccacatctgtccgtgataatggtacctcacaaggaaatagtattcaagaagtgatgagagttgttgcaacattaccaggagcagaaactggtaccaagctatggtggtttgcaacggagttgttttgttctcaggagaagcgtgagatgttttctattatgacagatgctgatttgaagctccagtttctgattcttaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

210

Amino Acids

23.17

Weight (kDa)

4.14

Isoelectric Point (pI)

51.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 452, 521
AccB1I GGYRCC 2 cut(s) 452, 521
AccB7I CCANNNNNTGG 1 cut(s) 531
AciI CCGC 3 cut(s) 137, 150, 192
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 4 cut(s) 298, 427, 454, 523
AfiI CCNNNNNNNGG 2 cut(s) 160, 531
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 6 cut(s) 50, 289, 347, 416, 476, 607
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 3 cut(s) 332, 529, 610
AluI AGCT 3 cut(s) 332, 529, 610
AlwNI CAGNNNCTG 3 cut(s) 518, 599, 619
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 233
Asp718I GGTACC 2 cut(s) 452, 521
AspA2I CCTAGG 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 199
AvrII CCTAGG 1 cut(s) 304
BanI GGYRCC 2 cut(s) 452, 521
BbsI GAAGAC 1 cut(s) 177
BbvCI CCTCAGC 1 cut(s) 165
BccI CCATC 3 cut(s) 26, 206, 259
BciT130I CCWGG 1 cut(s) 507
BfaI CTAG 2 cut(s) 221, 305
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 151
BlnI CCTAGG 1 cut(s) 304
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 454, 523
BmrFI CCNGG 1 cut(s) 507
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpmI CTGGAG 1 cut(s) 596
Bpu10I CCTNAGC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 531
Bse1I ACTGG 2 cut(s) 523, 613
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 160, 531
BseMII CTCAG 5 cut(s) 156, 342, 357, 396, 575
BseNI ACTGG 2 cut(s) 523, 613
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 2 cut(s) 452, 521
BslI CCNNNNNNNGG 2 cut(s) 160, 531
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 3 cut(s) 137, 150, 192
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 5 cut(s) 157, 341, 358, 397, 574
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 454, 523
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 2 cut(s) 452, 521
BsrI ACTGG 2 cut(s) 523, 613
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 507
Bst6I CTCTTC 3 cut(s) 174, 342, 390
BstAPI GCANNNNNTGC 2 cut(s) 70, 237
BstDEI CTNAG 5 cut(s) 165, 328, 366, 405, 561
BstKTI GATC 1 cut(s) 216
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 2 cut(s) 70, 237
BstNI CCWGG 1 cut(s) 507
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 153
BtrI CACGTC 1 cut(s) 244
CaiI CAGNNNCTG 3 cut(s) 518, 599, 619
CciI TCATGA 1 cut(s) 318
Csp6I GTAC 4 cut(s) 297, 426, 453, 522
CviAII CATG 3 cut(s) 83, 283, 319
CviJI RGCY 8 cut(s) 15, 153, 164, 269, 332, 431, 529, 610
CviKI_1 RGCY 8 cut(s) 15, 153, 164, 269, 332, 431, 529, 610
CviQI GTAC 4 cut(s) 297, 426, 453, 522
DdeI CTNAG 5 cut(s) 165, 328, 366, 405, 561
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 3 cut(s) 174, 342, 390
EarI CTCTTC 3 cut(s) 174, 342, 390
EciI GGCGGA 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 86, 286, 322
FatI CATG 3 cut(s) 82, 282, 318
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 2 cut(s) 221, 305
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 3 cut(s) 86, 286, 322
HinfI GANTC 4 cut(s) 322, 362, 401, 622
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 4 cut(s) 367, 385, 406, 621
Hpy188III TCNNGA 5 cut(s) 221, 257, 319, 476, 563
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 5 cut(s) 73, 100, 231, 497, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 237
HpyF3I CTNAG 5 cut(s) 165, 328, 366, 405, 561
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 3 cut(s) 86, 286, 322
KpnI GGTACC 2 cut(s) 456, 525
Kzo9I GATC 1 cut(s) 213
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 509, 615
LpnPI CCDG 8 cut(s) 50, 59, 270, 492, 504, 519, 548, 626
LweI GCATC 1 cut(s) 586
MaeI CTAG 2 cut(s) 221, 305
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 6 cut(s) 62, 182, 191, 359, 398, 407
MluCI AATT 5 cut(s) 233, 249, 373, 378, 628
MnlI CCTC 7 cut(s) 139, 154, 160, 343, 352, 391, 466
MseI TTAA 2 cut(s) 377, 627
MslI CAYNNNNRTG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 507
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 2 cut(s) 70, 237
NdeII GATC 1 cut(s) 213
NlaIII CATG 3 cut(s) 86, 286, 322
NlaIV GGNNCC 2 cut(s) 454, 523
NmuCI GTSAC 1 cut(s) 308
NspI RCATGY 1 cut(s) 286
PagI TCATGA 1 cut(s) 318
PciI ACATGT 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 4 cut(s) 322, 362, 401, 622
PflMI CCANNNNNTGG 1 cut(s) 531
PkrI GCNGC 1 cut(s) 152
PscI ACATGT 1 cut(s) 282
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 2 cut(s) 454, 523
PstNI CAGNNNCTG 3 cut(s) 518, 599, 619
RsaI GTAC 4 cut(s) 298, 427, 454, 523
RsaNI GTAC 4 cut(s) 297, 426, 453, 522
RseI CAYNNNNRTG 1 cut(s) 131
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 377, 627
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 507
SetI ASST 9 cut(s) 9, 58, 246, 310, 334, 354, 458, 531, 612
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 5 cut(s) 233, 249, 373, 378, 628
SsiI CCGC 3 cut(s) 137, 150, 192
SspMI CTAG 2 cut(s) 221, 305
StyD4I CCNGG 1 cut(s) 505
StyI CCWWGG 1 cut(s) 304
TaiI ACGT 1 cut(s) 246
TaqI TCGA 1 cut(s) 201
TasI AATT 5 cut(s) 233, 249, 373, 378, 628
TatI WGTACW 2 cut(s) 296, 425
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 4 cut(s) 322, 362, 401, 622
Tru1I TTAA 2 cut(s) 377, 627
Tru9I TTAA 2 cut(s) 377, 627
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 71, 192, 408
TspGWI ACGGA 2 cut(s) 431, 560
Van91I CCANNNNNTGG 1 cut(s) 531
XapI RAATTY 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 220
XceI RCATGY 1 cut(s) 286
XmaJI CCTAGG 1 cut(s) 304
XspI CTAG 2 cut(s) 221, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.