Rh6AG057500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000240
Physical Location & Seq
Reverse (-)
8375800 .. 8393037
17238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG057500.1

Sequence Viewer

Length: 504 bp
ATGTCAAGCTCTCTCTCTCTTTGGGTTTGGCCACGGTCCGGCTTTGGATCTCCCACCGGTGGCTTCGACGGCTTGTGGGTGGTCAACAGCTGGGCACGGTGGCTCTACTCAACATGGCTGCATGTCATCACTAGTGGAGATCGGGCGGCTGGTCTGGGTGCCCCTGAGGATTCTTTCAGGGGTCTGGGCCTGGTTTCTGGGTTAAGTTCTAGGTGCCCTGAGGAATTCTTCAGGGGCTTGGAATTGGGCCTGTGCTGTGTTGAGTATCGCAAATTTCGCGAAGTGGGAGTTAGTCCTGACATGATGGCTGTCTATGATAACATGTTCAAGGGTAGCACAGCCCTAGGTCACAATGTCATGATTCCCTCAGAAACTATAGATATTGAAGAGGTTGTGGAGGATTCTGAGCATAATATTATTTCTGGAGATGATGAAGAGGATTATGAGCAAGGTAATGAATGTAGAGGGAAAAAGAGAACAAGTGGAGCGCCAAACAGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.41

Weight (kDa)

4.71

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 158, 213
AccII CGCG 1 cut(s) 279
AciI CCGC 1 cut(s) 146
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 2 cut(s) 224, 272
AcuI CTGAAG 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 38, 59, 497
AflIII ACRYGT 1 cut(s) 321
AgeI ACCGGT 1 cut(s) 56
AgsI TTSAA 2 cut(s) 328, 386
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 9, 90
AluI AGCT 2 cut(s) 9, 90
AlwI GGATC 1 cut(s) 55
AlwNI CAGNNNCTG 1 cut(s) 501
AoxI GGCC 3 cut(s) 29, 187, 247
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 2 cut(s) 224, 272
AsiGI ACCGGT 1 cut(s) 56
AspA2I CCTAGG 1 cut(s) 343
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 3 cut(s) 36, 187, 247
AvaII GGWCC 1 cut(s) 36
AvrII CCTAGG 1 cut(s) 343
AxyI CCTNAGG 2 cut(s) 165, 219
BaeGI GKGCMC 3 cut(s) 97, 163, 218
BalI TGGCCA 1 cut(s) 31
BanI GGYRCC 2 cut(s) 158, 213
BbvI GCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 298
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 3 cut(s) 132, 210, 344
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 491
BisI GCNGC 2 cut(s) 119, 147
BlnI CCTAGG 1 cut(s) 343
BlsI GCNGC 2 cut(s) 120, 148
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 3 cut(s) 36, 187, 247
BmiI GGNNCC 2 cut(s) 160, 215
BmrFI CCNGG 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 32, 343
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 59, 497
Bse118I RCCGGY 1 cut(s) 56
Bse21I CCTNAGG 2 cut(s) 165, 219
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 32, 343
BseLI CCNNNNNNNGG 3 cut(s) 38, 59, 497
BseMII CTCAG 4 cut(s) 156, 210, 381, 396
BseSI GKGCMC 3 cut(s) 97, 163, 218
BseXI GCAGC 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 3 cut(s) 31, 189, 249
BshNI GGYRCC 2 cut(s) 158, 213
BshTI ACCGGT 1 cut(s) 56
BsiSI CCGG 2 cut(s) 39, 57
BslI CCNNNNNNNGG 3 cut(s) 38, 59, 497
BsnI GGCC 3 cut(s) 31, 189, 249
Bsp1286I GDGCHC 3 cut(s) 97, 163, 218
Bsp143I GATC 2 cut(s) 47, 139
Bsp68I TCGCGA 1 cut(s) 279
BspACI CCGC 1 cut(s) 146
BspANI GGCC 3 cut(s) 31, 189, 249
BspCNI CTCAG 4 cut(s) 157, 211, 380, 397
BspFNI CGCG 1 cut(s) 279
BspHI TCATGA 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 160, 215
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 2 cut(s) 158, 213
BsrFI RCCGGY 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 32, 343
BssMI GATC 2 cut(s) 47, 139
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 2 cut(s) 36, 99
Bst6I CTCTTC 2 cut(s) 381, 429
BstDEI CTNAG 4 cut(s) 165, 219, 367, 405
BstDSI CCRYGG 1 cut(s) 32
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 2 cut(s) 50, 142
BstMBI GATC 2 cut(s) 47, 139
BstMWI GCNNNNNNNGC 2 cut(s) 69, 276
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 125, 325
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 3 cut(s) 97, 163, 218
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
Bsu36I CCTNAGG 2 cut(s) 165, 219
BsuRI GGCC 3 cut(s) 31, 189, 249
BtgI CCRYGG 1 cut(s) 32
BtuMI TCGCGA 1 cut(s) 279
CaiI CAGNNNCTG 1 cut(s) 501
CciI TCATGA 1 cut(s) 357
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 36, 187, 247
CpoI CGGWCCG 1 cut(s) 36
CspAI ACCGGT 1 cut(s) 56
CspI CGGWCCG 1 cut(s) 36
CviAII CATG 5 cut(s) 114, 122, 301, 322, 358
DdeI CTNAG 4 cut(s) 165, 219, 367, 405
DpnI GATC 2 cut(s) 49, 141
DpnII GATC 2 cut(s) 47, 139
EaeI YGGCCR 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 381, 429
EarI CTCTTC 2 cut(s) 381, 429
Eco130I CCWWGG 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 214
Eco81I CCTNAGG 2 cut(s) 165, 219
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 5 cut(s) 117, 125, 304, 325, 361
FaiI YATR 9 cut(s) 115, 123, 302, 315, 323, 359, 377, 411, 444
FatI CATG 5 cut(s) 113, 121, 300, 321, 357
Fnu4HI GCNGC 2 cut(s) 119, 147
Fsp4HI GCNGC 2 cut(s) 119, 147
FspBI CTAG 3 cut(s) 132, 210, 344
GlaI GCGC 1 cut(s) 489
GluI GCNGC 2 cut(s) 119, 147
GsaI CCCAGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 3 cut(s) 31, 189, 249
HapII CCGG 2 cut(s) 39, 57
HhaI GCGC 1 cut(s) 490
Hin1II CATG 5 cut(s) 117, 125, 304, 325, 361
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 3 cut(s) 170, 361, 401
HpaII CCGG 2 cut(s) 39, 57
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 370, 406
Hpy188III TCNNGA 4 cut(s) 278, 296, 358, 423
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 36, 99
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 276
HpyF3I CTNAG 4 cut(s) 165, 219, 367, 405
Hsp92II CATG 5 cut(s) 117, 125, 304, 325, 361
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 2 cut(s) 47, 139
LmnI GCTCC 1 cut(s) 485
Lsp1109I GCAGC 1 cut(s) 105
MaeI CTAG 3 cut(s) 132, 210, 344
MaeIII GTNAC 1 cut(s) 347
MalI GATC 2 cut(s) 49, 141
MboI GATC 2 cut(s) 47, 139
MboII GAAGA 3 cut(s) 220, 398, 446
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 3 cut(s) 97, 163, 218
MlsI TGGCCA 1 cut(s) 31
MluCI AATT 3 cut(s) 224, 242, 272
MluNI TGGCCA 1 cut(s) 31
MnlI CCTC 8 cut(s) 160, 214, 376, 382, 391, 430, 458, 491
Mox20I TGGCCA 1 cut(s) 31
MscI TGGCCA 1 cut(s) 31
MseI TTAA 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 31
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 2 cut(s) 39, 57
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 69, 276
NdeII GATC 2 cut(s) 47, 139
NlaIII CATG 5 cut(s) 117, 125, 304, 325, 361
NlaIV GGNNCC 2 cut(s) 160, 215
NmuCI GTSAC 1 cut(s) 347
NruI TCGCGA 1 cut(s) 279
NspI RCATGY 2 cut(s) 125, 325
PagI TCATGA 1 cut(s) 357
PciI ACATGT 1 cut(s) 321
PfeI GAWTC 3 cut(s) 170, 361, 401
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 2 cut(s) 120, 148
PscI ACATGT 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 160, 215
PspPI GGNCC 3 cut(s) 36, 187, 247
PstNI CAGNNNCTG 1 cut(s) 501
PsuI RGATCY 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 90
RruI TCGCGA 1 cut(s) 279
Rsr2I CGGWCCG 1 cut(s) 36
RsrII CGGWCCG 1 cut(s) 36
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 2 cut(s) 119, 147
Sau3AI GATC 2 cut(s) 47, 139
Sau96I GGNCC 3 cut(s) 36, 187, 247
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 3 cut(s) 97, 163, 218
SetI ASST 6 cut(s) 11, 92, 215, 349, 393, 454
SfcI CTRYAG 1 cut(s) 375
SgrAI CRCCGGYG 1 cut(s) 56
SinI GGWCC 1 cut(s) 36
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 3 cut(s) 224, 242, 272
SsiI CCGC 1 cut(s) 146
SspI AATATT 1 cut(s) 415
SspMI CTAG 3 cut(s) 132, 210, 344
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 36, 99
TaqI TCGA 1 cut(s) 66
TasI AATT 3 cut(s) 224, 242, 272
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 3 cut(s) 170, 361, 401
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 2 cut(s) 447, 471
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 2 cut(s) 224, 272
XceI RCATGY 2 cut(s) 125, 325
XmaJI CCTAGG 1 cut(s) 343
XspI CTAG 3 cut(s) 132, 210, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.