Rw6G022960
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000240
Physical Location & Seq
Reverse (-)
45174707 .. 45175682
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022960.1

Sequence Viewer

Length: 876 bp
ATGGCAAAAGAATCAGCCGTTTGGAATGAGGGTTTATTAGATCTTTTTTGTGACCTGTGTATGAAGGAGGTGGATAATGATAATCGTCCACACACTCATTTTAATCCGGAGGGATGGGCGAATATAATCAGTAATTTTTCAAAAGAAACAGGAAAAGTATATACCAAAAAACAACTGAAAAATAAATGGGATTCCCTTAAAGACCATTGGAAATTATGGAAAGAATTGAAGGGGAAAGAGACCGGTCTTGGGTGGGATCACAAGAAAAGGACTATTGCTGCATCCGAGGAGTGGTGGCGTGGCAAAATTGAGAAAAACAAGGATTATGCAAAGTTCAAGAAAAAGGGGATCACACCCGATTTTGAAGTGAAGTTGGATAAGATGTTCATGGGTATTGCAGCCACCGGAAAGCATGCATATGCACCATCTTCTACACTGCCCATTCCTAGAAGTCCAGAGCAAGATGGCAACCTTGAAGGTAGTGGTGACTCTGAGGACAATGATGAACCTAAAACCACTCTGCCTAAAAGAAAAAGAAATGAGAGAGCTGAGAAAGGTAAAGGAGAAAAACCAAAAAAGGAAAAGGTGGGGGGTGCTGCTCACTTGGCTAAACAAATTGACCGAATGTGTGAGGCAATTGAGAGTAGAAGTGCATCAACTTCAATTATGTATAAAGGTGTGCAGGATGGTGGAGGGACTAGTATTAAGGAAGTGATGAAGGATGTCACTTCATTGCCTGGAGCTGAGCAGGGTAGTAGGTTGTGGTTTTTTGGCACCCGGTTGTTTTTAAGTTCAGAGAAGAGAGAGATGTATTGCACTATGGACGATCCTAACATGAAGTTGGAGTGGCTGAAATATGAGATGAATGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

291

Amino Acids

33.26

Weight (kDa)

8.97

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 8 - 100 7e-23 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 773
AccIII TCCGGA 1 cut(s) 106
AclWI GGATC 3 cut(s) 264, 356, 821
AfiI CCNNNNNNNGG 2 cut(s) 249, 291
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 6 cut(s) 141, 229, 337, 365, 476, 663
AhlI ACTAGT 1 cut(s) 698
AjnI CCWGG 1 cut(s) 736
AloI GAACNNNNNNTCC 2 cut(s) 368, 400
AluBI AGCT 2 cut(s) 548, 743
AluI AGCT 2 cut(s) 548, 743
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 3 cut(s) 264, 356, 821
Aor13HI TCCGGA 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 278, 398, 596
AsiGI ACCGGT 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 778
AsuHPI GGTGA 1 cut(s) 497
BanI GGYRCC 1 cut(s) 773
BbvI GCAGC 3 cut(s) 265, 410, 583
BccI CCATC 4 cut(s) 108, 433, 458, 680
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 738
BcnI CCSGG 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 233
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 2 cut(s) 447, 699
BglII AGATCT 1 cut(s) 40
BisI GCNGC 3 cut(s) 279, 399, 597
BlpI GCTNAGC 1 cut(s) 744
BlsI GCNGC 3 cut(s) 280, 400, 598
Bme1390I CCNGG 2 cut(s) 738, 778
BmiI GGNNCC 1 cut(s) 775
BmrFI CCNGG 2 cut(s) 738, 778
BmsI GCATC 2 cut(s) 290, 662
BpmI CTGGAG 1 cut(s) 759
Bpu1102I GCTNAGC 1 cut(s) 744
BpuMI CCSGG 1 cut(s) 778
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 3 cut(s) 106, 242, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 291
Bse118I RCCGGY 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 731
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 738
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 4 cut(s) 119, 281, 691, 727
BseLI CCNNNNNNNGG 2 cut(s) 249, 291
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 3 cut(s) 483, 540, 735
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 3 cut(s) 265, 410, 583
BsgI GTGCAG 1 cut(s) 701
BshNI GGYRCC 1 cut(s) 773
BshTI ACCGGT 1 cut(s) 242
BsiSI CCGG 4 cut(s) 107, 243, 405, 778
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 2 cut(s) 249, 291
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 709
Bso31I GGTCTC 1 cut(s) 233
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 4 cut(s) 40, 256, 348, 826
Bsp1720I GCTNAGC 1 cut(s) 744
BspCNI CTCAG 3 cut(s) 484, 541, 736
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 775
BspPI GGATC 3 cut(s) 264, 356, 821
BspT107I GGYRCC 1 cut(s) 773
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 731
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 4 cut(s) 40, 256, 348, 826
Bst2UI CCWGG 1 cut(s) 738
Bst6I CTCTTC 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 492, 549, 744
BstF5I GGATG 4 cut(s) 119, 281, 691, 727
BstKTI GATC 4 cut(s) 43, 259, 351, 829
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 4 cut(s) 40, 256, 348, 826
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 2 cut(s) 736, 776
BstV1I GCAGC 3 cut(s) 265, 410, 583
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BtsCI GGATG 4 cut(s) 119, 281, 691, 727
BtsI GCAGTG 1 cut(s) 434
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 414
Cfr10I RCCGGY 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 3 cut(s) 388, 413, 835
CviJI RGCY 6 cut(s) 17, 401, 548, 608, 743, 850
CviKI_1 RGCY 6 cut(s) 17, 401, 548, 608, 743, 850
DdeI CTNAG 3 cut(s) 492, 549, 744
DpnI GATC 4 cut(s) 42, 258, 350, 828
DpnII GATC 4 cut(s) 40, 256, 348, 826
Eam1104I CTCTTC 1 cut(s) 794
EarI CTCTTC 1 cut(s) 794
Eco31I GGTCTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 736
EcoT22I ATGCAT 1 cut(s) 418
FaeI CATG 3 cut(s) 391, 416, 838
FaqI GGGAC 1 cut(s) 709
FatI CATG 3 cut(s) 387, 412, 834
FauNDI CATATG 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 279, 399, 597
FokI GGATG 4 cut(s) 126, 268, 698, 734
Fsp4HI GCNGC 3 cut(s) 279, 399, 597
FspBI CTAG 2 cut(s) 447, 699
GluI GCNGC 3 cut(s) 279, 399, 597
GsuI CTGGAG 1 cut(s) 759
HapII CCGG 4 cut(s) 107, 243, 405, 778
Hin1II CATG 3 cut(s) 391, 416, 838
HinfI GANTC 3 cut(s) 11, 191, 488
HpaII CCGG 4 cut(s) 107, 243, 405, 778
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 286, 493, 796
Hpy188III TCNNGA 3 cut(s) 107, 337, 455
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 4 cut(s) 58, 223, 470, 712
HpyCH4V TGCA 8 cut(s) 281, 329, 398, 416, 422, 653, 682, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 3 cut(s) 492, 549, 744
Hsp92II CATG 3 cut(s) 391, 416, 838
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 4 cut(s) 40, 256, 348, 826
LmnI GCTCC 1 cut(s) 740
Lsp1109I GCAGC 3 cut(s) 265, 410, 583
LweI GCATC 2 cut(s) 290, 662
MaeI CTAG 2 cut(s) 447, 699
MaeIII GTNAC 3 cut(s) 50, 485, 724
MalI GATC 4 cut(s) 42, 258, 350, 828
MboI GATC 4 cut(s) 40, 256, 348, 826
MboII GAAGA 2 cut(s) 420, 811
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 1 cut(s) 40
MluCI AATT 7 cut(s) 133, 212, 224, 306, 615, 636, 663
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 354, 822
MnlI CCTC 7 cut(s) 22, 61, 103, 280, 487, 625, 686
Mph1103I ATGCAT 1 cut(s) 418
MroI TCCGGA 1 cut(s) 106
MseI TTAA 4 cut(s) 102, 198, 705, 788
MslI CAYNNNNRTG 1 cut(s) 417
MspI CCGG 4 cut(s) 107, 243, 405, 778
MspR9I CCNGG 2 cut(s) 738, 778
MunI CAATTG 1 cut(s) 636
MvaI CCWGG 1 cut(s) 738
MwoI GCNNNNNNNGC 1 cut(s) 605
NciI CCSGG 1 cut(s) 778
NdeI CATATG 1 cut(s) 418
NdeII GATC 4 cut(s) 40, 256, 348, 826
NlaIII CATG 3 cut(s) 391, 416, 838
NlaIV GGNNCC 1 cut(s) 775
NmuCI GTSAC 3 cut(s) 50, 485, 724
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 416
PaeI GCATGC 1 cut(s) 416
PfeI GAWTC 2 cut(s) 11, 191
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 3 cut(s) 280, 400, 598
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 1 cut(s) 775
PsuI RGATCY 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 417
SaqAI TTAA 4 cut(s) 102, 198, 705, 788
SatI GCNGC 3 cut(s) 279, 399, 597
Sau3AI GATC 4 cut(s) 40, 256, 348, 826
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 2 cut(s) 738, 778
SfaNI GCATC 2 cut(s) 290, 662
SmiMI CAYNNNNRTG 1 cut(s) 417
SpeI ACTAGT 1 cut(s) 698
SphI GCATGC 1 cut(s) 416
Sse9I AATT 7 cut(s) 133, 212, 224, 306, 615, 636, 663
SspMI CTAG 2 cut(s) 447, 699
StyD4I CCNGG 2 cut(s) 736, 776
TaqII GACCGA 1 cut(s) 636
TasI AATT 7 cut(s) 133, 212, 224, 306, 615, 636, 663
TfiI GAWTC 2 cut(s) 11, 191
Tru1I TTAA 4 cut(s) 102, 198, 705, 788
Tru9I TTAA 4 cut(s) 102, 198, 705, 788
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 3 cut(s) 50, 485, 724
TseI GCWGC 3 cut(s) 278, 398, 596
Tsp45I GTSAC 3 cut(s) 50, 485, 724
TspDTI ATGAA 6 cut(s) 77, 376, 519, 720, 731, 851
TspRI CASTG 1 cut(s) 441
XceI RCATGY 1 cut(s) 416
XspI CTAG 2 cut(s) 447, 699
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.