RchiOBHm_Chr2g0153151
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000240
Physical Location & Seq
Reverse (-)
70612222 .. 70613349
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52224

Sequence Viewer

Length: 462 bp
ATGGGAAGGAAAAAGATTACTAGTGATAATAGCACAGAGACGATCAATCTTGAAAATGGGCAAACTGGAACTAAATCTGCCAGCTGGAATCCTCAAACAGTAGCCATATTTTGTGACTTATGTATCAAGGAAGTTGGAAAAGGACAGAGGCCTGGTACTCACTTTAATAAAGAAGGATGGGCTAGTTTGGTTGCAAACTTTCATGCAGAGACTGGAAATAATTATGACAAATCACAATTGAAGAACAAGTGGGATTTACTGAAAAAAGAATGGAAAATATGGAAAGATCTAATCGGAAAGGATACTGGCCTTGGTTGGAATCCCACTAAAAATATTGTCGATGCATCAGAAGAATGGTGGAGGAATAAAATACAGATAAATCCGCAATATGCAAAATTAAGTGTTCGAGGCATCAATCCTGAGATGGAGGCAAAGTTAGATATGATGTTCAATGTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

153

Amino Acids

17.47

Weight (kDa)

9.04

Isoelectric Point (pI)

15.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 28 - 122 1.6e-26 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 383
AfaI GTAC 1 cut(s) 157
AgsI TTSAA 3 cut(s) 53, 241, 451
AhlI ACTAGT 1 cut(s) 20
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 84
AluI AGCT 1 cut(s) 84
Alw26I GTCTC 2 cut(s) 32, 203
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 2 cut(s) 149, 307
BaeI ACNNNNGTAYC 2 cut(s) 106, 139
BccI CCATC 2 cut(s) 171, 418
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 2 cut(s) 32, 203
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 2 cut(s) 21, 183
BfmI CTRYAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 295
BglII AGATCT 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 3 cut(s) 331, 353, 420
BsaJI CCNNGG 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bse1I ACTGG 3 cut(s) 70, 217, 310
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 3 cut(s) 70, 217, 310
BshFI GGCC 2 cut(s) 151, 309
BsmAI GTCTC 2 cut(s) 32, 203
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 151, 309
Bsp143I GATC 2 cut(s) 42, 286
BspACI CCGC 1 cut(s) 383
BspANI GGCC 2 cut(s) 151, 309
BspCNI CTCAG 1 cut(s) 412
BsrI ACTGG 3 cut(s) 70, 217, 310
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 2 cut(s) 42, 286
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 2 cut(s) 45, 289
BstMAI GTCTC 2 cut(s) 32, 203
BstMBI GATC 2 cut(s) 42, 286
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 458
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 2 cut(s) 151, 309
BtsCI GGATG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 212
Csp6I GTAC 1 cut(s) 156
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 84, 104, 151, 182, 309
CviKI_1 RGCY 5 cut(s) 84, 104, 151, 182, 309
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 420
DpnI GATC 2 cut(s) 44, 288
DpnII GATC 2 cut(s) 42, 286
Eco130I CCWWGG 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 310
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 206
FaiI YATR 7 cut(s) 107, 121, 204, 225, 280, 390, 443
FatI CATG 1 cut(s) 202
FokI GGATG 1 cut(s) 189
FspBI CTAG 2 cut(s) 21, 183
HaeIII GGCC 2 cut(s) 151, 309
Hin1II CATG 1 cut(s) 206
HinfI GANTC 2 cut(s) 88, 319
Hpy188I TCNGA 2 cut(s) 296, 349
Hpy188III TCNNGA 2 cut(s) 50, 419
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 4 cut(s) 194, 206, 344, 392
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 2 cut(s) 42, 286
LpnPI CCDG 8 cut(s) 51, 70, 94, 138, 165, 198, 291, 432
LweI GCATC 3 cut(s) 331, 353, 420
MaeI CTAG 2 cut(s) 21, 183
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 44, 288
MboI GATC 2 cut(s) 42, 286
MboII GAAGA 2 cut(s) 253, 362
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 1 cut(s) 286
MluCI AATT 3 cut(s) 220, 236, 395
MmeI TCCRAC 2 cut(s) 115, 296
MnlI CCTC 5 cut(s) 102, 141, 354, 401, 421
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 2 cut(s) 165, 398
MspA1I CMGCKG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 153
NdeII GATC 2 cut(s) 42, 286
NlaIII CATG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 346
PceI AGGCCT 1 cut(s) 151
PfeI GAWTC 2 cut(s) 88, 319
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 84
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 2 cut(s) 165, 398
Sau3AI GATC 2 cut(s) 42, 286
ScrFI CCNGG 1 cut(s) 153
SetI ASST 1 cut(s) 86
SfaNI GCATC 3 cut(s) 331, 353, 420
SfcI CTRYAG 1 cut(s) 458
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 3 cut(s) 220, 236, 395
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 1 cut(s) 383
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 21, 183
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 339, 406
TasI AATT 3 cut(s) 220, 236, 395
TfiI GAWTC 2 cut(s) 88, 319
Tru1I TTAA 2 cut(s) 165, 398
Tru9I TTAA 2 cut(s) 165, 398
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 191
XspI CTAG 2 cut(s) 21, 183
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.