Rmu_ssc0000486.1_g000012
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000486.1
OG0000240
Physical Location & Seq
Forward (+)
43288 .. 45165
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000486.1_g000012.1.cds

Sequence Viewer

Length: 951 bp
atgggaaagaagaaatccaccggtactgaaaatgtgggatctggaaaacaaaaagccacatggccagatgaggtagtagctatattttgtgatatagctacaaaggaagtggccaagggaaacagacttggtacacattttgataaaaagggatggtcaaatgttgtcatggcctttaaggagttaatcggaaaggattacgataaaagccaactgaaaaataagcgggattcacttaaaaatgattggaaattgtggagttcacttttgcataaggaaactggtattggatgggatccggctaggaaaactgtcgacgtacctgctgaatggtgggaatccaaaattcagatcaatccagagtatcgcaagtctcgggacgtgggaattagtcctgaaatgatggctgtttatgacaacatgttcaggggtagcacagccctaggtcactttgtcatgattccctcggctactatagatattgaagaggttgtggaggattcagagcataacttaatttctggagatgatgaagaggattctgaccaagataatgaacgtagaggcaaaaagagaacaaatttggagcgccaaacagaggctgataaagaaaaaaaaggaaaaggagttatgggagggccaaaggggaagaaagaaaaggtgggaggtgaggcgaaattgtctaaacaaatcgatcgtcttgttgatgtagtcgagagtaggagtacagccatatctgtacgtgataatggtacctcaccaggaactagtattcaagaggtgatgagagttgttgcaacattaccaggagcagaaaccggtactatgctatggtggtttgcaacggagttgttctgctctcaggagaagcgagagatgttttctattatgacagatgctgatctcaagctccagtttctgattcttaatcagaaaaaagctgaaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

316

Amino Acids

35.51

Weight (kDa)

6.5

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
Acc65I GGTACC 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 752
AccI GTMKAC 1 cut(s) 315
AciI CCGC 1 cut(s) 226
AclWI GGATC 3 cut(s) 46, 290, 303
AcoI YGGCCR 2 cut(s) 62, 111
AcsI RAATTY 2 cut(s) 345, 580
AfaI GTAC 7 cut(s) 25, 133, 321, 727, 741, 754, 823
AfiI CCNNNNNNNGG 1 cut(s) 598
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 2 cut(s) 20, 818
AgsI TTSAA 2 cut(s) 485, 776
AhlI ACTAGT 1 cut(s) 767
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 2 cut(s) 760, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 4 cut(s) 80, 98, 910, 941
AluI AGCT 4 cut(s) 80, 98, 910, 941
Alw26I GTCTC 1 cut(s) 378
AlwI GGATC 3 cut(s) 46, 290, 303
AlwNI CAGNNNCTG 3 cut(s) 602, 899, 919
Ama87I CYCGRG 1 cut(s) 375
AoxI GGCC 4 cut(s) 62, 111, 171, 638
ApoI RAATTY 2 cut(s) 345, 580
ArsI GACNNNNNNTTYG 2 cut(s) 682, 714
AsiGI ACCGGT 2 cut(s) 20, 818
Asp718I GGTACC 1 cut(s) 752
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 3 cut(s) 680, 750, 793
AvaI CYCGRG 1 cut(s) 375
AvrII CCTAGG 1 cut(s) 442
BalI TGGCCA 2 cut(s) 64, 113
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 752
BccI CCATC 3 cut(s) 147, 285, 397
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 2 cut(s) 762, 807
BcoDI GTCTC 1 cut(s) 378
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 3 cut(s) 303, 443, 768
BfmI CTRYAG 1 cut(s) 474
BfoI RGCGCY 1 cut(s) 592
BfuAI ACCTGC 1 cut(s) 331
BlnI CCTAGG 1 cut(s) 442
Bme1390I CCNGG 2 cut(s) 762, 807
BmeT110I CYCGRG 1 cut(s) 375
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 2 cut(s) 297, 754
BmrFI CCNGG 2 cut(s) 762, 807
BmsI GCATC 1 cut(s) 886
BpmI CTGGAG 2 cut(s) 543, 896
BpuEI CTTGAG 1 cut(s) 890
Bsa29I ATCGAT 1 cut(s) 693
BsaAI YACGTR 1 cut(s) 743
BsaBI GATNNNNATC 1 cut(s) 900
BsaJI CCNNGG 3 cut(s) 114, 442, 465
BsaWI WCCGGW 2 cut(s) 20, 818
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse118I RCCGGY 2 cut(s) 20, 818
Bse1I ACTGG 2 cut(s) 286, 913
Bse8I GATNNNNATC 1 cut(s) 900
BseBI CCWGG 2 cut(s) 762, 807
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 3 cut(s) 114, 442, 465
BseGI GGATG 2 cut(s) 158, 296
BseJI GATNNNNATC 1 cut(s) 900
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMII CTCAG 1 cut(s) 875
BseNI ACTGG 2 cut(s) 286, 913
Bsh1285I CGRYCG 1 cut(s) 697
BshFI GGCC 4 cut(s) 64, 113, 173, 640
BshNI GGYRCC 1 cut(s) 752
BshTI ACCGGT 2 cut(s) 20, 818
BshVI ATCGAT 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 3 cut(s) 21, 299, 819
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 598
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 4 cut(s) 64, 113, 173, 640
BsoBI CYCGRG 1 cut(s) 375
Bsp143I GATC 5 cut(s) 38, 295, 351, 694, 901
BspACI CCGC 1 cut(s) 226
BspANI GGCC 4 cut(s) 64, 113, 173, 640
BspCNI CTCAG 1 cut(s) 874
BspDI ATCGAT 1 cut(s) 693
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 2 cut(s) 297, 754
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 3 cut(s) 46, 290, 303
BspT107I GGYRCC 1 cut(s) 752
BsrFI RCCGGY 2 cut(s) 20, 818
BsrI ACTGG 2 cut(s) 286, 913
BssAI RCCGGY 2 cut(s) 20, 818
BssECI CCNNGG 3 cut(s) 114, 442, 465
BssMI GATC 5 cut(s) 38, 295, 351, 694, 901
BssT1I CCWWGG 2 cut(s) 114, 442
Bst2UI CCWGG 2 cut(s) 762, 807
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 2 cut(s) 480, 528
BstBAI YACGTR 1 cut(s) 743
BstDEI CTNAG 1 cut(s) 861
BstF5I GGATG 2 cut(s) 158, 296
BstH2I RGCGCY 1 cut(s) 592
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 5 cut(s) 41, 298, 354, 697, 904
BstMAI GTCTC 1 cut(s) 378
BstMBI GATC 5 cut(s) 38, 295, 351, 694, 901
BstMCI CGRYCG 1 cut(s) 697
BstNI CCWGG 2 cut(s) 762, 807
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 760, 805
BstSFI CTRYAG 1 cut(s) 474
BstX2I RGATCY 2 cut(s) 38, 295
BstYI RGATCY 2 cut(s) 38, 295
Bsu15I ATCGAT 1 cut(s) 693
BsuRI GGCC 4 cut(s) 64, 113, 173, 640
BsuTUI ATCGAT 1 cut(s) 693
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 158, 296
BveI ACCTGC 1 cut(s) 331
CaiI CAGNNNCTG 3 cut(s) 602, 899, 919
CciI TCATGA 1 cut(s) 456
CfoI GCGC 1 cut(s) 591
Cfr10I RCCGGY 2 cut(s) 20, 818
Cfr13I GGNCC 1 cut(s) 638
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 7 cut(s) 24, 132, 320, 726, 740, 753, 822
CspAI ACCGGT 2 cut(s) 20, 818
CspCI CAANNNNNGTGG 2 cut(s) 90, 125
CviAII CATG 4 cut(s) 60, 169, 421, 457
CviQI GTAC 7 cut(s) 24, 132, 320, 726, 740, 753, 822
DdeI CTNAG 1 cut(s) 861
DpnI GATC 5 cut(s) 40, 297, 353, 696, 903
DpnII GATC 5 cut(s) 38, 295, 351, 694, 901
EaeI YGGCCR 2 cut(s) 62, 111
Eam1104I CTCTTC 2 cut(s) 480, 528
EarI CTCTTC 2 cut(s) 480, 528
Eco130I CCWWGG 2 cut(s) 114, 442
Eco88I CYCGRG 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 760, 805
EcoT14I CCWWGG 2 cut(s) 114, 442
ErhI CCWWGG 2 cut(s) 114, 442
FaeI CATG 4 cut(s) 63, 172, 424, 460
FaqI GGGAC 1 cut(s) 392
FatI CATG 4 cut(s) 59, 168, 420, 456
FauI CCCGC 1 cut(s) 219
FblI GTMKAC 1 cut(s) 315
FokI GGATG 2 cut(s) 165, 303
FspBI CTAG 3 cut(s) 303, 443, 768
GlaI GCGC 1 cut(s) 590
GsuI CTGGAG 2 cut(s) 543, 896
HaeII RGCGCY 1 cut(s) 592
HaeIII GGCC 4 cut(s) 64, 113, 173, 640
HapII CCGG 3 cut(s) 21, 299, 819
HhaI GCGC 1 cut(s) 591
Hin1II CATG 4 cut(s) 63, 172, 424, 460
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 6 cut(s) 230, 338, 460, 500, 539, 922
HpaII CCGG 3 cut(s) 21, 299, 819
HphI GGTGA 3 cut(s) 680, 750, 793
Hpy166II GTNNAC 3 cut(s) 134, 263, 316
Hpy188I TCNGA 6 cut(s) 191, 351, 505, 544, 921, 933
Hpy188III TCNNGA 9 cut(s) 42, 359, 377, 395, 457, 522, 715, 776, 863
Hpy8I GTNNAC 3 cut(s) 134, 263, 316
Hpy99I CGWCG 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 4 cut(s) 318, 381, 559, 742
HpyCH4V TGCA 3 cut(s) 271, 797, 842
HpyF3I CTNAG 1 cut(s) 861
HpySE526I ACGT 4 cut(s) 318, 381, 559, 742
Hsp92II CATG 4 cut(s) 63, 172, 424, 460
HspAI GCGC 1 cut(s) 589
KpnI GGTACC 1 cut(s) 756
Kzo9I GATC 5 cut(s) 38, 295, 351, 694, 901
LmnI GCTCC 3 cut(s) 586, 809, 915
LweI GCATC 1 cut(s) 886
MaeI CTAG 3 cut(s) 303, 443, 768
MaeII ACGT 4 cut(s) 318, 381, 559, 742
MaeIII GTNAC 1 cut(s) 446
MalI GATC 5 cut(s) 40, 297, 353, 696, 903
MboI GATC 5 cut(s) 38, 295, 351, 694, 901
MboII GAAGA 4 cut(s) 22, 497, 545, 661
MflI RGATCY 2 cut(s) 38, 295
MlsI TGGCCA 2 cut(s) 64, 113
MluCI AATT 7 cut(s) 251, 345, 387, 516, 580, 677, 946
MluNI TGGCCA 2 cut(s) 64, 113
Mox20I TGGCCA 2 cut(s) 64, 113
MscI TGGCCA 2 cut(s) 64, 113
MseI TTAA 6 cut(s) 177, 185, 237, 515, 927, 949
Msp20I TGGCCA 2 cut(s) 64, 113
MspI CCGG 3 cut(s) 21, 299, 819
MspR9I CCNGG 2 cut(s) 762, 807
MvaI CCWGG 2 cut(s) 762, 807
NdeII GATC 5 cut(s) 38, 295, 351, 694, 901
NlaIII CATG 4 cut(s) 63, 172, 424, 460
NlaIV GGNNCC 2 cut(s) 297, 754
NmeAIII GCCGAG 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 446
NspI RCATGY 1 cut(s) 424
PagI TCATGA 1 cut(s) 456
PciI ACATGT 1 cut(s) 420
PfeI GAWTC 6 cut(s) 230, 338, 460, 500, 539, 922
PinAI ACCGGT 2 cut(s) 20, 818
Ple19I CGATCG 1 cut(s) 697
Ppu21I YACGTR 1 cut(s) 743
PscI ACATGT 1 cut(s) 420
Psp6I CCWGG 2 cut(s) 760, 805
PspGI CCWGG 2 cut(s) 760, 805
PspN4I GGNNCC 2 cut(s) 297, 754
PspPI GGNCC 1 cut(s) 638
PstNI CAGNNNCTG 3 cut(s) 602, 899, 919
PsuI RGATCY 2 cut(s) 38, 295
PvuI CGATCG 1 cut(s) 697
RsaI GTAC 7 cut(s) 25, 133, 321, 727, 741, 754, 823
RsaNI GTAC 7 cut(s) 24, 132, 320, 726, 740, 753, 822
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 6 cut(s) 177, 185, 237, 515, 927, 949
Sau3AI GATC 5 cut(s) 38, 295, 351, 694, 901
Sau96I GGNCC 1 cut(s) 638
ScrFI CCNGG 2 cut(s) 762, 807
SfaNI GCATC 1 cut(s) 886
SfcI CTRYAG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 7 cut(s) 251, 345, 387, 516, 580, 677, 946
SsiI CCGC 1 cut(s) 226
SspMI CTAG 3 cut(s) 303, 443, 768
StyD4I CCNGG 2 cut(s) 760, 805
StyI CCWWGG 2 cut(s) 114, 442
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 4 cut(s) 321, 384, 562, 745
TaqI TCGA 3 cut(s) 315, 693, 714
TasI AATT 7 cut(s) 251, 345, 387, 516, 580, 677, 946
TatI WGTACW 1 cut(s) 725
TfiI GAWTC 6 cut(s) 230, 338, 460, 500, 539, 922
Tru1I TTAA 6 cut(s) 177, 185, 237, 515, 927, 949
Tru9I TTAA 6 cut(s) 177, 185, 237, 515, 927, 949
TseFI GTSAC 1 cut(s) 446
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 2 cut(s) 546, 570
TspGWI ACGGA 1 cut(s) 860
XapI RAATTY 2 cut(s) 345, 580
XceI RCATGY 1 cut(s) 424
XmaJI CCTAGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 315
XspI CTAG 3 cut(s) 303, 443, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.