pycom08g11770
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000240
Physical Location & Seq
Reverse (-)
10029649 .. 10029975
327 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g11770.1

Sequence Viewer

Length: 327 bp
ATGGAGGACAAGTTAGATACGATGTTCTCGAACACAGTTGCTACTAGTGAACATGCCTGGGCAACTTCATCTGGAGTACTAGCACCAGAGACAAGAGAGGAATCTATAAGACAAATTGATTCGGATGATGAGGAAGAAACTGAGACTATTCAGGATCTAAGGCAAGCTATTGGGAAGGGAAATAAAAAAGAGCAACTAATCAAGGAGAATTGCAAAAGAAGAAGGTTGATAAGAAAGGGAACAAAATTGGAGGTGCTGCAAAACTTTGTGGTCAAATTGACTGTCTTGTTGAAGCTTATGAAAGTAGGAGTTCTGCAAACTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

109

Amino Acids

12.34

Weight (kDa)

6.74

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 162
AfaI GTAC 1 cut(s) 78
AgsI TTSAA 1 cut(s) 292
AhlI ACTAGT 1 cut(s) 44
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 2 cut(s) 167, 295
AluI AGCT 2 cut(s) 167, 295
Alw26I GTCTC 2 cut(s) 83, 137
AlwI GGATC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 267, 299
BbvI GCAGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 83, 137
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 2 cut(s) 45, 80
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmcAI AGTACT 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseBI CCWGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 83, 137
Bsp143I GATC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 37, 283
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 141, 158
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 83, 137
BstMBI GATC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtsCI GGATG 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 53
CviJI RGCY 2 cut(s) 167, 295
CviKI_1 RGCY 2 cut(s) 167, 295
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 141, 158
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 56
FaiI YATR 3 cut(s) 54, 107, 299
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 2 cut(s) 45, 80
GluI GCNGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 93
Hin1II CATG 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 2 cut(s) 101, 119
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 28, 72, 152
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 169, 216
HpyCH4III ACNGT 2 cut(s) 37, 283
HpyCH4V TGCA 3 cut(s) 213, 259, 316
HpyF3I CTNAG 2 cut(s) 141, 158
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 5 cut(s) 43, 57, 70, 99, 137
Lsp1109I GCAGC 1 cut(s) 243
MaeI CTAG 2 cut(s) 45, 80
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 146, 231
MflI RGATCY 1 cut(s) 154
MluCI AATT 4 cut(s) 114, 208, 245, 275
MnlI CCTC 3 cut(s) 91, 124, 244
MspR9I CCNGG 1 cut(s) 58
MvaI CCWGG 1 cut(s) 58
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 56
NspI RCATGY 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PfeI GAWTC 2 cut(s) 101, 119
PkrI GCNGC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 154
ScaI AGTACT 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 58
SetI ASST 4 cut(s) 169, 227, 255, 297
SpeI ACTAGT 1 cut(s) 44
Sse9I AATT 4 cut(s) 114, 208, 245, 275
SspMI CTAG 2 cut(s) 45, 80
StyD4I CCNGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 37, 283
TaqI TCGA 1 cut(s) 29
TasI AATT 4 cut(s) 114, 208, 245, 275
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 2 cut(s) 101, 119
TseI GCWGC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 57, 314
XceI RCATGY 1 cut(s) 56
XspI CTAG 2 cut(s) 45, 80
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.