FvH4_6g53022
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000240
Physical Location & Seq
Forward (+)
38927718 .. 38928299
582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53022.t1

Sequence Viewer

Length: 540 bp
ATGATGGATATTTATGATCAGATGTTCAAAGGTAGCGTAGCTCTAGGGCAATCTGTCATGATTCCCTTAGCTAGTATAGTTGGTGAAGAGGTATTGGAGGATTTTGAGCATGATGAGGATGAGGTTCCTGATCCCGTGGAAGATATTCAAGGTAGGGGGAAAAAGAGAACAACTGTGGAAAGGCAAACAGAAGGTACTAAAGACAAAGGTGTTGGAAAAGGGGCAAATGGGAAGAAAGGAAGAGTGGGAGGTGCGGCAAAATTGTTTAAACAAATTGATCGCCTTGTCGAAGTAGTTGAGAGTAGGAGTACAGCTACATCAATTCCCACAAGTGCAGCAGCAACTAGTATTCAAGAGGTCATGCAAGTTGTTGCAACTTTACCAGGAGCTGAAACTGGAACCAAGCTGTGGTGGTTTGCAACAGAGCTGTTTTGCTCTCAAGAAAAGCGAGAGATGTTCTCTATCATGACAGATGCTGATCTGAAGCTCCAGTTTTTGATTCTTAATCAAAAAAAGGCTGATCCTTCTTTTGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

180

Amino Acids

19.66

Weight (kDa)

4.96

Isoelectric Point (pI)

25.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 408
AciI CCGC 1 cut(s) 254
AclWI GGATC 2 cut(s) 125, 515
AcuI CTGAAG 1 cut(s) 503
AfaI GTAC 2 cut(s) 196, 310
AfiI CCNNNNNNNGG 1 cut(s) 408
AgsI TTSAA 3 cut(s) 28, 149, 353
AhlI ACTAGT 1 cut(s) 344
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 7 cut(s) 41, 71, 314, 389, 406, 427, 487
AluI AGCT 7 cut(s) 41, 71, 314, 389, 406, 427, 487
AlwI GGATC 2 cut(s) 125, 515
AlwNI CAGNNNCTG 2 cut(s) 389, 476
ApeKI GCWGC 2 cut(s) 335, 338
Asp700I GAANNNNTTC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 95
BbvI GCAGC 2 cut(s) 347, 350
BciT130I CCWGG 1 cut(s) 384
BclI TGATCA 1 cut(s) 16
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 3 cut(s) 44, 72, 345
BisI GCNGC 3 cut(s) 255, 336, 339
BlsI GCNGC 3 cut(s) 256, 337, 340
Bme1390I CCNGG 1 cut(s) 384
BmiI GGNNCC 2 cut(s) 126, 400
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 463
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpmI CTGGAG 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse1I ACTGG 2 cut(s) 400, 490
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 408
BseNI ACTGG 2 cut(s) 400, 490
BseXI GCAGC 2 cut(s) 347, 350
BsgI GTGCAG 1 cut(s) 354
BslI CCNNNNNNNGG 1 cut(s) 408
Bsp143I GATC 5 cut(s) 16, 130, 277, 478, 520
BspACI CCGC 1 cut(s) 254
BspHI TCATGA 2 cut(s) 57, 465
BspLI GGNNCC 2 cut(s) 126, 400
BspPI GGATC 2 cut(s) 125, 515
BsrI ACTGG 2 cut(s) 400, 490
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 5 cut(s) 16, 130, 277, 478, 520
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 81, 235
BstDEI CTNAG 1 cut(s) 67
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 5 cut(s) 19, 133, 280, 481, 523
BstMBI GATC 5 cut(s) 16, 130, 277, 478, 520
BstNI CCWGG 1 cut(s) 384
BstSCI CCNGG 1 cut(s) 382
BstV1I GCAGC 2 cut(s) 347, 350
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 124
CaiI CAGNNNCTG 2 cut(s) 389, 476
CciI TCATGA 2 cut(s) 57, 465
Csp6I GTAC 2 cut(s) 195, 309
CviAII CATG 4 cut(s) 58, 110, 361, 466
CviJI RGCY 8 cut(s) 41, 71, 314, 389, 406, 427, 487, 518
CviKI_1 RGCY 8 cut(s) 41, 71, 314, 389, 406, 427, 487, 518
CviQI GTAC 2 cut(s) 195, 309
DdeI CTNAG 1 cut(s) 67
DpnI GATC 5 cut(s) 18, 132, 279, 480, 522
DpnII GATC 5 cut(s) 16, 130, 277, 478, 520
DraI TTTAAA 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 81, 235
EarI CTCTTC 2 cut(s) 81, 235
Eco57I CTGAAG 1 cut(s) 503
EcoRII CCWGG 1 cut(s) 382
FaeI CATG 4 cut(s) 61, 113, 364, 469
FaiI YATR 6 cut(s) 15, 59, 77, 111, 362, 467
FatI CATG 4 cut(s) 57, 109, 360, 465
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 255, 336, 339
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 255, 336, 339
FspBI CTAG 3 cut(s) 44, 72, 345
GluI GCNGC 3 cut(s) 255, 336, 339
GsuI CTGGAG 1 cut(s) 473
Hin1II CATG 4 cut(s) 61, 113, 364, 469
HinfI GANTC 2 cut(s) 61, 499
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 21, 483
Hpy188III TCNNGA 5 cut(s) 58, 128, 353, 440, 466
HpyAV CCTTC 2 cut(s) 185, 534
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 335, 364, 374, 419
HpyF3I CTNAG 1 cut(s) 67
Hsp92II CATG 4 cut(s) 61, 113, 364, 469
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 130, 277, 478, 520
LmnI GCTCC 2 cut(s) 386, 492
LpnPI CCDG 5 cut(s) 141, 369, 381, 396, 503
Lsp1109I GCAGC 2 cut(s) 347, 350
LweI GCATC 1 cut(s) 463
MaeI CTAG 3 cut(s) 44, 72, 345
MalI GATC 5 cut(s) 18, 132, 279, 480, 522
MboI GATC 5 cut(s) 16, 130, 277, 478, 520
MboII GAAGA 4 cut(s) 98, 152, 244, 252
MluCI AATT 3 cut(s) 260, 273, 321
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 6 cut(s) 82, 91, 109, 115, 242, 349
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 2 cut(s) 267, 504
MspR9I CCNGG 1 cut(s) 384
MssI GTTTAAAC 1 cut(s) 268
MvaI CCWGG 1 cut(s) 384
NdeII GATC 5 cut(s) 16, 130, 277, 478, 520
NlaIII CATG 4 cut(s) 61, 113, 364, 469
NlaIV GGNNCC 2 cut(s) 126, 400
PagI TCATGA 2 cut(s) 57, 465
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 61, 499
PflMI CCANNNNNTGG 1 cut(s) 408
PkrI GCNGC 3 cut(s) 256, 337, 340
PmeI GTTTAAAC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 126, 400
PstNI CAGNNNCTG 2 cut(s) 389, 476
RsaI GTAC 2 cut(s) 196, 310
RsaNI GTAC 2 cut(s) 195, 309
SaqAI TTAA 2 cut(s) 267, 504
SatI GCNGC 3 cut(s) 255, 336, 339
Sau3AI GATC 5 cut(s) 16, 130, 277, 478, 520
ScrFI CCNGG 1 cut(s) 384
SfaNI GCATC 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 3 cut(s) 260, 273, 321
SsiI CCGC 1 cut(s) 254
SspMI CTAG 3 cut(s) 44, 72, 345
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 288
TasI AATT 3 cut(s) 260, 273, 321
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 2 cut(s) 61, 499
Tru1I TTAA 2 cut(s) 267, 504
Tru9I TTAA 2 cut(s) 267, 504
TseI GCWGC 2 cut(s) 335, 338
Van91I CCANNNNNTGG 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 3 cut(s) 44, 72, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.