FvH4_1g28413
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
20328477 .. 20328968
492 bp
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UTR
Exon/CDS
Intron
FvH4_1g28413.t1

Sequence Viewer

Length: 492 bp
ATGTTTAAGGGGACTTCAGCCACCGGTATGTATGCTTATATACCAGGTGCATCACCACCTTTGCCTGAAAGTCCAAACCAAGGGGAAAATCAGCAAAACCTTGAAGAGAGTTCTAATTCTGAAGATACATCACACCCTACTAAAAGAAGAAAAGGAAATGCAGTTGGGAAAGGCAAAGGTGTTGTTACAAAACCTGGAAGGGTAGGAGGTGTTGCTCTTTTAGCACAAAAAATTGACCGAATGTGTGAGGCTATTGAGAGTAGAAGTACAGCAAGTTCTATGATCAATAAGAGTGTAGAAACAAGTGATGACACTAGTATTAAAGAAGTGATGAAGGTGGTCAGTTCTTTGCCTGGGGCCGAGCAGGGTACTAAGATGTTCTTTTTTGCAAGTCGGTTGTTCCTAAATAAAGAGAAGAGGGAGATGTTTTGCTGTATGGAAGGTCCTCACATGAAGTTGGAGTATTTGAAATTTGAGATGGCTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

17.85

Weight (kDa)

8.4

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 2 cut(s) 268, 370
AfiI CCNNNNNNNGG 1 cut(s) 80
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 2 cut(s) 104, 469
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 3 cut(s) 43, 193, 352
AoxI GGCC 1 cut(s) 357
ApoI RAATTY 1 cut(s) 470
AsiGI ACCGGT 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 357, 443
AsuHPI GGTGA 1 cut(s) 45
AvaII GGWCC 1 cut(s) 443
BccI CCATC 1 cut(s) 472
BciT130I CCWGG 3 cut(s) 45, 195, 354
BclI TGATCA 1 cut(s) 282
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 1 cut(s) 315
Bme1390I CCNGG 3 cut(s) 45, 195, 354
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 357, 443
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 3 cut(s) 45, 195, 354
BmsI GCATC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 79, 353
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 23
BseBI CCWGG 3 cut(s) 45, 195, 354
BseDI CCNNGG 2 cut(s) 79, 353
BseLI CCNNNNNNNGG 1 cut(s) 80
BshFI GGCC 1 cut(s) 359
BshTI ACCGGT 1 cut(s) 23
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 359
Bsp143I GATC 1 cut(s) 282
BspANI GGCC 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 79, 353
BssMI GATC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 3 cut(s) 45, 195, 354
Bst6I CTCTTC 2 cut(s) 99, 410
BstDEI CTNAG 1 cut(s) 372
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 3 cut(s) 45, 195, 354
BstSCI CCNGG 3 cut(s) 43, 193, 352
BsuRI GGCC 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 357, 443
CsiI ACCWGGT 1 cut(s) 43
Csp6I GTAC 2 cut(s) 267, 369
CspAI ACCGGT 1 cut(s) 23
CviAII CATG 1 cut(s) 451
CviJI RGCY 4 cut(s) 20, 251, 359, 482
CviKI_1 RGCY 4 cut(s) 20, 251, 359, 482
CviQI GTAC 2 cut(s) 267, 369
DdeI CTNAG 1 cut(s) 372
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 99, 410
EarI CTCTTC 2 cut(s) 99, 410
Eco130I CCWWGG 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 443
EcoRII CCWGG 3 cut(s) 43, 193, 352
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 1 cut(s) 454
FaiI YATR 7 cut(s) 29, 33, 39, 41, 281, 437, 452
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 450
FbaI TGATCA 1 cut(s) 282
FspBI CTAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 24
Hin1II CATG 1 cut(s) 454
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 45
Hpy188I TCNGA 1 cut(s) 121
HpyAV CCTTC 3 cut(s) 192, 328, 434
HpyCH4V TGCA 3 cut(s) 50, 161, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 1 cut(s) 282
LpnPI CCDG 9 cut(s) 30, 37, 57, 78, 180, 207, 339, 350, 366
LweI GCATC 1 cut(s) 59
MabI ACCWGGT 1 cut(s) 43
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 4 cut(s) 116, 134, 159, 427
MluCI AATT 4 cut(s) 115, 231, 470, 487
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 4 cut(s) 200, 241, 411, 456
MseI TTAA 3 cut(s) 6, 321, 490
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 3 cut(s) 45, 195, 354
MvaI CCWGG 3 cut(s) 45, 195, 354
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 1 cut(s) 282
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 1 cut(s) 358
NmeAIII GCCGAG 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 23
PpuMI RGGWCCY 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 3 cut(s) 43, 193, 352
PspGI CCWGG 3 cut(s) 43, 193, 352
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 2 cut(s) 357, 443
PspPPI RGGWCCY 1 cut(s) 443
PsrI GAACNNNNNNTAC 2 cut(s) 259, 291
RsaI GTAC 2 cut(s) 268, 370
RsaNI GTAC 2 cut(s) 267, 369
RseI CAYNNNNRTG 1 cut(s) 26
SaqAI TTAA 3 cut(s) 6, 321, 490
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 2 cut(s) 357, 443
ScrFI CCNGG 3 cut(s) 45, 195, 354
SetI ASST 8 cut(s) 49, 61, 102, 181, 196, 211, 339, 445
SexAI ACCWGGT 1 cut(s) 43
SfaNI GCATC 1 cut(s) 59
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 4 cut(s) 115, 231, 470, 487
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 3 cut(s) 43, 193, 352
StyI CCWWGG 1 cut(s) 79
TaqII GACCGA 1 cut(s) 252
TasI AATT 4 cut(s) 115, 231, 470, 487
TatI WGTACW 1 cut(s) 266
Tru1I TTAA 3 cut(s) 6, 321, 490
Tru9I TTAA 3 cut(s) 6, 321, 490
TspDTI ATGAA 2 cut(s) 347, 467
VpaK11BI GGWCC 1 cut(s) 443
XapI RAATTY 1 cut(s) 470
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.