Rroxscaffold_7G00157820
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000240
Physical Location & Seq
Reverse (-)
1539446 .. 1542116
2671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157820.1

Sequence Viewer

Length: 456 bp
ATGGCTGTTTGGAATGATGGTTTAGTAGATGTGTTTTGTGACTTATGTATCAAGGAAGTGGATAACAATAATCGTCCACATACTCATTTTAATCCGGAGGGATGGGTGAATATAATCAAAAATTTTTCTAATGAAACGGGCAAAGAATATACTAGAAAACAAATGAAAAATAAATGGGATTCCCTCAAAGATCATTGGAAATTATGGAAAGATTTGAAGGGAAAAGAGACCGGTCTTGGGTGGGATCACAAGCGTCAAACTATAGATGCATCCGATGAGTGGTGGCGCCTCAAGATTGAGAAAAACAAGGAATATGGAAAGTTAAAGAAAAAGGGAATTGCACCCGATTTTGAAGACAAGTTGGATAAGATGTTCATGGGTATTTCAGCCACTGGTCAGCATGCATATTCACCATCTTCTGCACTACCTATCCCTAGAAGTCCACAAGCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

151

Amino Acids

17.67

Weight (kDa)

9.13

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 4 - 96 1.4e-23 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 285
AccIII TCCGGA 1 cut(s) 94
AclWI GGATC 1 cut(s) 252
AcsI RAATTY 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 286
AfiI CCNNNNNNNGG 2 cut(s) 237, 279
AgeI ACCGGT 1 cut(s) 230
AgsI TTSAA 2 cut(s) 217, 353
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 252
AlwNI CAGNNNCTG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 94
ApoI RAATTY 1 cut(s) 121
AsiGI ACCGGT 1 cut(s) 230
AspLEI GCGC 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 118, 402
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BanI GGYRCC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 360
BccI CCATC 3 cut(s) 11, 96, 421
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 153, 435
BfmI CTRYAG 1 cut(s) 261
BfoI RGCGCY 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 287
BmsI GCATC 2 cut(s) 256, 278
BpiI GAAGAC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 221
BsaWI WCCGGW 2 cut(s) 94, 230
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 279
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 397
BseAI TCCGGA 1 cut(s) 94
BseGI GGATG 2 cut(s) 107, 269
BseLI CCNNNNNNNGG 2 cut(s) 237, 279
BseNI ACTGG 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 405
BshNI GGYRCC 1 cut(s) 285
BshTI ACCGGT 1 cut(s) 230
BsiSI CCGG 2 cut(s) 95, 231
BslI CCNNNNNNNGG 2 cut(s) 237, 279
BsmAI GTCTC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 221
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 2 cut(s) 190, 244
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 285
BspTNI GGTCTC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 230
BssMI GATC 2 cut(s) 190, 244
BssNI GRCGYC 1 cut(s) 286
BstACI GRCGYC 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 402
BstF5I GGATG 2 cut(s) 107, 269
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 2 cut(s) 193, 247
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 2 cut(s) 190, 244
BstNSI RCATGY 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 360
BtsCI GGATG 2 cut(s) 107, 269
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 402
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 288
Cfr10I RCCGGY 1 cut(s) 230
CseI GACGC 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 230
CviAII CATG 2 cut(s) 376, 401
CviJI RGCY 2 cut(s) 5, 389
CviKI_1 RGCY 2 cut(s) 5, 389
DinI GGCGCC 1 cut(s) 287
DpnI GATC 2 cut(s) 192, 246
DpnII GATC 2 cut(s) 190, 244
Eco31I GGTCTC 1 cut(s) 221
EcoT22I ATGCAT 2 cut(s) 271, 406
EgeI GGCGCC 1 cut(s) 287
EheI GGCGCC 1 cut(s) 287
FaeI CATG 2 cut(s) 379, 404
FatI CATG 2 cut(s) 375, 400
FokI GGATG 2 cut(s) 114, 256
FspBI CTAG 2 cut(s) 153, 435
GlaI GCGC 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 289
HapII CCGG 2 cut(s) 95, 231
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 2 cut(s) 379, 404
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HinfI GANTC 1 cut(s) 179
HpaII CCGG 2 cut(s) 95, 231
HphI GGTGA 2 cut(s) 118, 402
Hpy166II GTNNAC 2 cut(s) 77, 443
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 2 cut(s) 95, 292
Hpy8I GTNNAC 2 cut(s) 77, 443
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 4 cut(s) 269, 341, 404, 422
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 2 cut(s) 379, 404
HspAI GCGC 1 cut(s) 286
KasI GGCGCC 1 cut(s) 285
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 190, 244
LpnPI CCDG 3 cut(s) 108, 244, 378
LweI GCATC 2 cut(s) 256, 278
MaeI CTAG 2 cut(s) 153, 435
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 192, 246
MboI GATC 2 cut(s) 190, 244
MboII GAAGA 2 cut(s) 365, 408
MluCI AATT 3 cut(s) 121, 200, 336
Mly113I GGCGCC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 3 cut(s) 91, 194, 299
Mph1103I ATGCAT 2 cut(s) 271, 406
MroI TCCGGA 1 cut(s) 94
MseI TTAA 2 cut(s) 90, 323
MspI CCGG 2 cut(s) 95, 231
NarI GGCGCC 1 cut(s) 286
NdeII GATC 2 cut(s) 190, 244
NlaIII CATG 2 cut(s) 379, 404
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 38
NsiI ATGCAT 2 cut(s) 271, 406
NspI RCATGY 1 cut(s) 404
PaeI GCATGC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 230
PluTI GGCGCC 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 90, 323
Sau3AI GATC 2 cut(s) 190, 244
SetI ASST 2 cut(s) 430, 455
SfaNI GCATC 2 cut(s) 256, 278
SfcI CTRYAG 1 cut(s) 261
SfoI GGCGCC 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 404
Sse9I AATT 3 cut(s) 121, 200, 336
SspDI GGCGCC 1 cut(s) 285
SspMI CTAG 2 cut(s) 153, 435
TasI AATT 3 cut(s) 121, 200, 336
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 90, 323
Tru9I TTAA 2 cut(s) 90, 323
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 3 cut(s) 147, 179, 364
TspRI CASTG 1 cut(s) 397
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 404
XspI CTAG 2 cut(s) 153, 435
Zsp2I ATGCAT 2 cut(s) 271, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.