pycom13g02550
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000240
Physical Location & Seq
Reverse (-)
1782596 .. 1782955
360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g02550.1

Sequence Viewer

Length: 360 bp
ATGGAGGACAAGTTAGATAGGATGTTCTCGAACACAGTTGCTACCGGTAAACATGCTTGGGCACCTTCATTTGGAGTACTACCAGAGACAAGAGAGGAATCTATACGACAAATTGATTCAAATGATGAGGATGAAGCTGAGACCATGCAGGATCTAAGACATGCTAGTAGGAAAGGGAAAAAAAGAGCGGCTAACCAAGGAAAATTGCAAAAAAAGAAGGTTGATAAGAAAGGGAAAAAAATTGCAGGTGCTGCAAAACTTTGTGGTCAAATTGACCGTCTTGTTGAAACTTATGAAACTAGGAGTTCTGCAAACTCATTGATATCCAAACTGCATATAGGTTGTAGTATTCCGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

120

Amino Acids

13.24

Weight (kDa)

9.3

Isoelectric Point (pI)

29.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 61
AccBSI CCGCTC 1 cut(s) 188
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 1 cut(s) 188
AclWI GGATC 1 cut(s) 159
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 71
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 2 cut(s) 120, 287
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 80, 134
AlwI GGATC 1 cut(s) 159
AlwNI CAGNNNCTG 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AsiGI ACCGGT 1 cut(s) 44
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 80, 134
BfaI CTAG 2 cut(s) 165, 300
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 2 cut(s) 189, 252
BlsI GCNGC 2 cut(s) 190, 253
BmcAI AGTACT 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 2 cut(s) 44, 352
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse118I RCCGGY 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 352
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 27, 136
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 61
BshTI ACCGGT 1 cut(s) 44
BsiSI CCGG 2 cut(s) 45, 353
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 2 cut(s) 80, 134
Bso31I GGTCTC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 64
Bsp13I TCCGGA 1 cut(s) 352
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 130
BspEI TCCGGA 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 134
BsrBI CCGCTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 196
Bst4CI ACNGT 2 cut(s) 37, 278
BstAPI GCANNNNNTGC 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 138, 155
BstF5I GGATG 2 cut(s) 27, 136
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 2 cut(s) 80, 134
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNSI RCATGY 2 cut(s) 56, 164
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BtsCI GGATG 2 cut(s) 27, 136
BveI ACCTGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 251
Cfr10I RCCGGY 1 cut(s) 44
Csp6I GTAC 1 cut(s) 77
CspAI ACCGGT 1 cut(s) 44
CviAII CATG 3 cut(s) 53, 145, 161
CviJI RGCY 2 cut(s) 137, 191
CviKI_1 RGCY 2 cut(s) 137, 191
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 138, 155
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 134
Eco32I GATATC 1 cut(s) 324
EcoRV GATATC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 3 cut(s) 56, 148, 164
FaiI YATR 7 cut(s) 54, 104, 146, 162, 294, 336, 338
FatI CATG 3 cut(s) 52, 144, 160
Fnu4HI GCNGC 2 cut(s) 189, 252
FokI GGATG 2 cut(s) 34, 143
Fsp4HI GCNGC 2 cut(s) 189, 252
FspBI CTAG 2 cut(s) 165, 300
GluI GCNGC 2 cut(s) 189, 252
HapII CCGG 2 cut(s) 45, 353
Hin1II CATG 3 cut(s) 56, 148, 164
HinfI GANTC 2 cut(s) 98, 116
HpaII CCGG 2 cut(s) 45, 353
Hpy166II GTNNAC 1 cut(s) 50
Hpy188III TCNNGA 2 cut(s) 28, 353
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 2 cut(s) 75, 211
HpyCH4III ACNGT 2 cut(s) 37, 278
HpyCH4V TGCA 6 cut(s) 148, 208, 245, 254, 311, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 138, 155
Hsp92II CATG 3 cut(s) 56, 148, 164
Kpn2I TCCGGA 1 cut(s) 352
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 58, 96, 134, 231
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 2 cut(s) 165, 300
MalI GATC 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 188
MboI GATC 1 cut(s) 151
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 4 cut(s) 111, 203, 240, 270
MnlI CCTC 2 cut(s) 88, 121
MroI TCCGGA 1 cut(s) 352
MspI CCGG 2 cut(s) 45, 353
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 151
NlaIII CATG 3 cut(s) 56, 148, 164
NlaIV GGNNCC 1 cut(s) 63
NspI RCATGY 2 cut(s) 56, 164
PaqCI CACCTGC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 98, 116
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 2 cut(s) 190, 253
PspN4I GGNNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SatI GCNGC 2 cut(s) 189, 252
Sau3AI GATC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 78
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 67, 139, 222, 250, 343
Sse9I AATT 4 cut(s) 111, 203, 240, 270
SsiI CCGC 1 cut(s) 188
SspMI CTAG 2 cut(s) 165, 300
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 37, 278
TaqI TCGA 1 cut(s) 29
TasI AATT 4 cut(s) 111, 203, 240, 270
TatI WGTACW 1 cut(s) 76
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 2 cut(s) 98, 116
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 57, 147, 309
XceI RCATGY 2 cut(s) 56, 164
XspI CTAG 2 cut(s) 165, 300
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.