Rh4BG200400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000240
Physical Location & Seq
Reverse (-)
34412051 .. 34416536
4486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG200400.1

Sequence Viewer

Length: 228 bp
ATGGGAATTTTTTTTTTCACTCTTTCAATTCAATTCCAGTCCCTCCACAATTTCATATGTCAAATTGATGCATTCTGGTCCCTAGTTCCAGTTACAAATTGGCCATTGAATCCTATGATGGGAAAGACGAAATCCACCGATACTGAAAATGAGGGATCTGGAAAACCAAAAGCCACATGGCCTGATGAGCCAACAAAGCGTCACACACAGAGAGATGTTGACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.64

Weight (kDa)

6.02

Isoelectric Point (pI)

12.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 3 cut(s) 27, 32, 109
AlwI GGATC 1 cut(s) 163
AoxI GGCC 2 cut(s) 101, 179
ApoI RAATTY 1 cut(s) 6
AspS9I GGNCC 1 cut(s) 78
AvaII GGWCC 1 cut(s) 78
BalI TGGCCA 1 cut(s) 103
BccI CCATC 1 cut(s) 112
BfaI CTAG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 80
BmsI GCATC 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 37, 89, 223
BseLI CCNNNNNNNGG 1 cut(s) 119
BseNI ACTGG 3 cut(s) 37, 89, 223
BshFI GGCC 2 cut(s) 103, 181
BslFI GGGAC 2 cut(s) 25, 64
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 25, 64
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 103, 181
Bsp143I GATC 1 cut(s) 155
BspANI GGCC 2 cut(s) 103, 181
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 1 cut(s) 163
BsrI ACTGG 3 cut(s) 37, 89, 223
BssMI GATC 1 cut(s) 155
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 2 cut(s) 187, 196
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 2 cut(s) 103, 181
Cfr13I GGNCC 1 cut(s) 78
CseI GACGC 1 cut(s) 188
CviAII CATG 1 cut(s) 177
CviJI RGCY 4 cut(s) 103, 173, 181, 190
CviKI_1 RGCY 4 cut(s) 103, 173, 181, 190
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 73
FaeI CATG 1 cut(s) 180
FaiI YATR 4 cut(s) 56, 58, 116, 178
FaqI GGGAC 2 cut(s) 25, 64
FatI CATG 1 cut(s) 176
FauNDI CATATG 1 cut(s) 56
FspBI CTAG 1 cut(s) 83
HaeIII GGCC 2 cut(s) 103, 181
HgaI GACGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 180
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 196
Hsp92II CATG 1 cut(s) 180
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 5 cut(s) 50, 61, 102, 144, 195
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 2 cut(s) 91, 200
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MflI RGATCY 1 cut(s) 155
MlsI TGGCCA 1 cut(s) 103
MluCI AATT 6 cut(s) 6, 27, 32, 49, 63, 97
MluNI TGGCCA 1 cut(s) 103
MnlI CCTC 2 cut(s) 53, 145
Mox20I TGGCCA 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 73
MscI TGGCCA 1 cut(s) 103
Msp20I TGGCCA 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 187, 196
NdeI CATATG 1 cut(s) 56
NdeII GATC 1 cut(s) 155
NlaIII CATG 1 cut(s) 180
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 73
PctI GAATGC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 78
PsuI RGATCY 1 cut(s) 155
Sau3AI GATC 1 cut(s) 155
Sau96I GGNCC 1 cut(s) 78
SfaNI GCATC 1 cut(s) 58
SgeI CNNG 7 cut(s) 49, 88, 95, 101, 171, 189, 194
SinI GGWCC 1 cut(s) 78
Sse9I AATT 6 cut(s) 6, 27, 32, 49, 63, 97
SspMI CTAG 1 cut(s) 83
TasI AATT 6 cut(s) 6, 27, 32, 49, 63, 97
TfiI GAWTC 1 cut(s) 109
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 1 cut(s) 6
XcmI CCANNNNNNNNNTGG 2 cut(s) 96, 174
XspI CTAG 1 cut(s) 83
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.