Rorug03G0077100
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000240
Physical Location & Seq
Forward (+)
6006061 .. 6008085
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0077100.1

Sequence Viewer

Length: 2025 bp
ATGAACACAACCACCACCACCACCACCACCACAAACCTTCCTCATCACATCAAACCAAAGGAAGCCTCACCAGAAACCAAACCTACCTTCAAGCTCTCCCAGAAAACAATCCTAGACATCTTGAACACAAAATGCACCACATCTCTACAAAACCTCAAGCAAGCCCATGGTGTTGTCCTGAGGTCAGGCCACTTTCAAGACCATTATGTAGCAGGCACCATACTAAAATGCTATGCAAGTCCTCACTTCAACAACTTTGGGTTTGCTTTGAAGGTGTTTGATAATGTGTGGAGGCCAAATGTGTTTGTATGGAACATTATGATCAAAGGGTGTGTGGAGAACTATGAGGCACTGGAAGCTATTTCATTTTATTCTAAGATGGTGGATATGAATTCCAGGCCTAATAAGTTCACCTATCCTATGTTGTTCAAGGCCTGCAGATTAGTTCAAGCAGTGGAGGAAGGTCTGCAAATTCATGCACATGTGGTGAAGCAACAGCTTAGTGAAGATGGGCACATAAGAAGTGCTGGGATTCAAATGTATGCGTCTTTCGGGCTTGTGGAGGAGGCAAGGAGGATATTGCTAGATGACGCGGCGTCGTCTGATGTTGTTTGTTGGAATGCAATGATTGATGGGTACATGAAATGTGGGGATGTAGAAGCAGCTAAGGAGTTGTTTGATAAGCACATGCCAATTAAGAATGTTGGGTCTTGGAATGCAATGGTGAGTGGTTTTGCTAGGTGTGGGAGGTTGAAAGATGCAAGGGCGGTATTTGATGAAATGACTGAGAGAGATGAGATTTCTTGGAGTGCTATGATTGATGGTTATGTGCAAGGAGGGTATCACAAGGAGGCATTGGAAGTTTTCAATGAGATGCAAAAGGAGAAGATTGTTAGTCCAAGGAAATTCGTATTGTCGAGTGTGTTAGCTGCTTGTGCCAATGTGGGAGCACTTGATCAAGGAAAGTGGATTCATGGTTATATTAAGAAGAACTCAATTCAGGTGGATGCAGTACTGGGGACCGCTTTGGTTGATATGTATGCCAAATGTGGGAGGCTTGACATGGCATGGGAAGTGTTTGAAAATGTGAAACGGAAAGAGGTTTCGACATGGAATGCCATGATTGGTGGGCTTGCTATGCATGGCCGAGCAGATGATGCATTGGATGTGTTCTTCAAGATGCAAGGGAATAATTTGGAACCAAATGGGATTACTTTTCTGAATGCTCTAAGTGCTTGTGCTCATGGGGGTTTTGTTGATGAAGGTCTTACAATTTTTAGTTCTATGAAGGAAATGTATGGAATGGAGGCTGAGGTAGAGCACTATGGGTGTGTGGTTGATATGTTTGGAAGGGCAGGGCTATTGGAAGAGGCAGAGCAGGTACTAAATTCAATGCCAATTGAACCTAGTGCAGCTGTTTATGGTGCCCTGTTGGGCGCTTGCAGGATACATGGAAATGTTGAAATGGGTGAGAGAGTGGGGAGGATTTTGCTTGAATTGGAACCGCAAAATAGTGGACGTTACGCGTTGTTATCTAACATCTATGCAGAGGCAGGTATGTGGGATGATGTTGCAGAGGTAAGAAAATTGATGAAGGAAAGGGGAGTGAAGACTATTCCTGGAATCAGCATGGTTGATATTGGTGGCAAAGTGCATGAATTCAAAATGGGAGATGGGTCACACCCACAAATGAAGGAGGTCTACTTGATGCTTGAAAAGATTATAGAAAAGCTGGAGACGGAGGGTTATTCACCGAATACATCTCAAGTTTTGTTTGACATTGCAGAGGAGGAGAAGGAAACAGCACTGCGGTACCACAGTGAGAAGCTTGCAATTGCTTTCGGAGTACTTAACACAAAACCTGGAACAACCATCCGTGTTGTGAAGAACTTGAGGATTTGTGAGGACTGTCATTCTGCCATAAAGCTCTTTTCACAATTATACAACCGGGATATAATTGTGAGGGACCGTATGCGCTATCATCATTTTAGAAATGGAAAGTGTTCGTGCAAGGATTTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

674

Amino Acids

75.65

Weight (kDa)

6.29

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 99 - 146 1.6e-10 PPR repeat family
PPR_2 PF13041 202 - 227 8.8e-07 PPR repeat family
PPR PF01535 204 - 228 1.8e-06 PPR repeat
PPR_1 PF12854 234 - 262 3e-06 PPR repeat
PPR PF01535 237 - 264 5.4e-07 PPR repeat
PPR_2 PF13041 265 - 297 1.1e-06 PPR repeat family
PPR PF01535 267 - 296 1.4e-08 PPR repeat
PPR_2 PF13041 368 - 414 1.4e-08 PPR repeat family
PPR PF01535 369 - 398 5.3e-07 PPR repeat
E_motif PF20431 484 - 545 3.2e-22 E motif
DYW_deaminase PF14432 582 - 674 5.2e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1369, 1544
Acc65I GGTACC 1 cut(s) 1812
AccB1I GGYRCC 3 cut(s) 215, 1424, 1812
AccI GTMKAC 1 cut(s) 1701
AccII CGCG 2 cut(s) 593, 1526
AciI CCGC 5 cut(s) 593, 767, 1023, 1505, 1810
AcoI YGGCCR 1 cut(s) 1144
AcsI RAATTY 5 cut(s) 391, 471, 905, 1387, 1658
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 5 cut(s) 638, 1014, 1383, 1814, 1848
AfiI CCNNNNNNNGG 1 cut(s) 1050
AflIII ACRYGT 2 cut(s) 481, 1524
AhdI GACNNNNNGTC 1 cut(s) 595
AjnI CCWGG 3 cut(s) 395, 1618, 1861
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 9 cut(s) 94, 359, 499, 665, 929, 1415, 1732, 1828, 1927
AluI AGCT 9 cut(s) 94, 359, 499, 665, 929, 1415, 1732, 1828, 1927
Alw21I GWGCWC 3 cut(s) 952, 1243, 1323
Alw26I GTCTC 1 cut(s) 1730
AoxI GGCC 5 cut(s) 187, 293, 398, 432, 1144
ApeKI GCWGC 3 cut(s) 662, 929, 1412
ApoI RAATTY 5 cut(s) 391, 471, 905, 1387, 1658
Asp700I GAANNNNTTC 1 cut(s) 2002
Asp718I GGTACC 1 cut(s) 1812
AspLEI GCGC 2 cut(s) 1439, 1977
AspS9I GGNCC 2 cut(s) 1020, 1966
AsuC2I CCSGG 1 cut(s) 1949
AsuHPI GGTGA 6 cut(s) 60, 403, 499, 736, 1481, 1743
AvaII GGWCC 2 cut(s) 1020, 1966
AxyI CCTNAGG 1 cut(s) 179
BaeGI GKGCMC 2 cut(s) 516, 1429
BaeI ACNNNNGTAYC 4 cut(s) 1796, 1804, 1829, 1837
BanI GGYRCC 3 cut(s) 215, 1424, 1812
BarI GAAGNNNNNNTAC 2 cut(s) 1685, 1717
BbsI GAAGAC 1 cut(s) 1616
Bbv12I GWGCWC 3 cut(s) 952, 1243, 1323
BbvCI CCTCAGC 1 cut(s) 1311
BbvI GCAGC 3 cut(s) 674, 916, 1424
BccI CCATC 6 cut(s) 373, 503, 626, 815, 1667, 1880
BciT130I CCWGG 3 cut(s) 397, 1620, 1863
BciVI GTATCC 1 cut(s) 1440
BclI TGATCA 2 cut(s) 321, 955
BcnI CCSGG 1 cut(s) 1949
BcoDI GTCTC 1 cut(s) 1730
BfaI CTAG 4 cut(s) 113, 584, 738, 1407
BfmI CTRYAG 1 cut(s) 436
BfoI RGCGCY 1 cut(s) 1440
BfuAI ACCTGC 2 cut(s) 1369, 1544
BfuI GTATCC 1 cut(s) 1440
BisI GCNGC 4 cut(s) 594, 663, 930, 1413
BlsI GCNGC 4 cut(s) 595, 664, 931, 1414
BmcAI AGTACT 2 cut(s) 1014, 1848
Bme1390I CCNGG 4 cut(s) 397, 1620, 1863, 1949
Bme18I GGWCC 2 cut(s) 1020, 1966
BmeRI GACNNNNNGTC 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 1020, 1966
BmiI GGNNCC 7 cut(s) 217, 1021, 1200, 1426, 1503, 1814, 1967
BmrFI CCNGG 4 cut(s) 397, 1620, 1863, 1949
BmrI ACTGGG 1 cut(s) 1025
BmsI GCATC 6 cut(s) 748, 864, 997, 1147, 1170, 1698
BmuI ACTGGG 1 cut(s) 1025
BpiI GAAGAC 1 cut(s) 1616
BpmI CTGGAG 1 cut(s) 1754
Bpu10I CCTNAGC 2 cut(s) 666, 1311
BpuEI CTTGAG 3 cut(s) 140, 1749, 1912
BpuMI CCSGG 1 cut(s) 1949
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 2 cut(s) 166, 899
Bsc4I CCNNNNNNNGG 1 cut(s) 1050
Bse1I ACTGG 2 cut(s) 357, 1020
Bse21I CCTNAGG 1 cut(s) 179
Bse3DI GCAATG 3 cut(s) 630, 726, 1779
BseBI CCWGG 3 cut(s) 397, 1620, 1863
BseDI CCNNGG 2 cut(s) 166, 899
BseGI GGATG 5 cut(s) 658, 1012, 1171, 1570, 1872
BseLI CCNNNNNNNGG 1 cut(s) 1050
BseMI GCAATG 3 cut(s) 630, 726, 1779
BseMII CTCAG 3 cut(s) 170, 777, 1302
BseNI ACTGG 2 cut(s) 357, 1020
BseRI GAGGAG 3 cut(s) 578, 1802, 1805
BseSI GKGCMC 2 cut(s) 516, 1429
BseXI GCAGC 3 cut(s) 674, 916, 1424
BseYI CCCAGC 1 cut(s) 527
BsgI GTGCAG 1 cut(s) 1431
Bsh1236I CGCG 2 cut(s) 593, 1526
BshFI GGCC 5 cut(s) 189, 295, 400, 434, 1146
BshNI GGYRCC 3 cut(s) 215, 1424, 1812
BsiHKAI GWGCWC 3 cut(s) 952, 1243, 1323
BsiSI CCGG 1 cut(s) 1948
BslFI GGGAC 2 cut(s) 1033, 1979
BslI CCNNNNNNNGG 1 cut(s) 1050
BsmAI GTCTC 1 cut(s) 1730
BsmBI CGTCTC 1 cut(s) 1730
BsmFI GGGAC 2 cut(s) 1033, 1979
BsmI GAATGC 4 cut(s) 625, 721, 1120, 1228
BsnI GGCC 5 cut(s) 189, 295, 400, 434, 1146
Bsp1286I GDGCHC 5 cut(s) 516, 952, 1243, 1323, 1429
Bsp143I GATC 2 cut(s) 321, 955
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 5 cut(s) 593, 767, 1023, 1505, 1810
BspANI GGCC 5 cut(s) 189, 295, 400, 434, 1146
BspCNI CTCAG 3 cut(s) 171, 778, 1303
BspFNI CGCG 2 cut(s) 593, 1526
BspLI GGNNCC 7 cut(s) 217, 1021, 1200, 1426, 1503, 1814, 1967
BspMAI CTGCAG 1 cut(s) 440
BspMI ACCTGC 2 cut(s) 1369, 1544
BspT107I GGYRCC 3 cut(s) 215, 1424, 1812
BsrDI GCAATG 3 cut(s) 630, 726, 1779
BsrI ACTGG 2 cut(s) 357, 1020
BssECI CCNNGG 2 cut(s) 166, 899
BssMI GATC 2 cut(s) 321, 955
BssNI GRCGYC 1 cut(s) 596
BssT1I CCWWGG 2 cut(s) 166, 899
Bst2UI CCWGG 3 cut(s) 397, 1620, 1863
Bst4CI ACNGT 3 cut(s) 1820, 1910, 1970
Bst6I CTCTTC 1 cut(s) 1362
BstACI GRCGYC 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstC8I GCNNGC 6 cut(s) 162, 214, 436, 1134, 1441, 1830
BstDEI CTNAG 7 cut(s) 179, 375, 500, 666, 786, 1229, 1311
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 5 cut(s) 658, 1012, 1171, 1570, 1872
BstFNI CGCG 2 cut(s) 593, 1526
BstH2I RGCGCY 1 cut(s) 1440
BstHHI GCGC 2 cut(s) 1439, 1977
BstKTI GATC 2 cut(s) 324, 958
BstMAI GTCTC 1 cut(s) 1730
BstMBI GATC 2 cut(s) 321, 955
BstMWI GCNNNNNNNGC 5 cut(s) 356, 935, 1138, 1157, 1232
BstNI CCWGG 3 cut(s) 397, 1620, 1863
BstNSI RCATGY 2 cut(s) 485, 691
BstSCI CCNGG 4 cut(s) 395, 1618, 1861, 1947
BstSFI CTRYAG 1 cut(s) 436
BstSLI GKGCMC 2 cut(s) 516, 1429
BstUI CGCG 2 cut(s) 593, 1526
BstV1I GCAGC 3 cut(s) 674, 916, 1424
BstV2I GAAGAC 1 cut(s) 1616
Bsu36I CCTNAGG 1 cut(s) 179
BsuI GTATCC 1 cut(s) 1440
BsuRI GGCC 5 cut(s) 189, 295, 400, 434, 1146
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 5 cut(s) 658, 1012, 1171, 1570, 1872
BtsI GCAGTG 2 cut(s) 459, 1805
BtsIMutI CAGTG 4 cut(s) 350, 459, 1805, 1825
BveI ACCTGC 2 cut(s) 1369, 1544
Cac8I GCNNGC 6 cut(s) 162, 214, 436, 1134, 1441, 1830
CfoI GCGC 2 cut(s) 1439, 1977
Cfr13I GGNCC 2 cut(s) 1020, 1966
CseI GACGC 3 cut(s) 534, 585, 599
Csp6I GTAC 5 cut(s) 637, 1013, 1382, 1813, 1847
CspCI CAANNNNNGTGG 4 cut(s) 947, 982, 984, 1019
CviQI GTAC 5 cut(s) 637, 1013, 1382, 1813, 1847
DdeI CTNAG 7 cut(s) 179, 375, 500, 666, 786, 1229, 1311
DpnI GATC 2 cut(s) 323, 957
DpnII GATC 2 cut(s) 321, 955
DriI GACNNNNNGTC 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 1144
Eam1104I CTCTTC 1 cut(s) 1362
Eam1105I GACNNNNNGTC 1 cut(s) 595
EarI CTCTTC 1 cut(s) 1362
Eco130I CCWWGG 2 cut(s) 166, 899
Eco147I AGGCCT 2 cut(s) 400, 434
Eco47I GGWCC 2 cut(s) 1020, 1966
Eco81I CCTNAGG 1 cut(s) 179
EcoRI GAATTC 2 cut(s) 391, 1658
EcoRII CCWGG 3 cut(s) 395, 1618, 1861
EcoT14I CCWWGG 2 cut(s) 166, 899
EcoT22I ATGCAT 2 cut(s) 1143, 1162
ErhI CCWWGG 2 cut(s) 166, 899
Esp3I CGTCTC 1 cut(s) 1730
FaqI GGGAC 2 cut(s) 1033, 1979
FbaI TGATCA 2 cut(s) 321, 955
FblI GTMKAC 1 cut(s) 1701
Fnu4HI GCNGC 4 cut(s) 594, 663, 930, 1413
FokI GGATG 5 cut(s) 665, 1019, 1178, 1577, 1859
Fsp4HI GCNGC 4 cut(s) 594, 663, 930, 1413
FspBI CTAG 4 cut(s) 113, 584, 738, 1407
GlaI GCGC 2 cut(s) 1438, 1976
GluI GCNGC 4 cut(s) 594, 663, 930, 1413
GsaI CCCAGC 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 1754
HaeII RGCGCY 1 cut(s) 1440
HaeIII GGCC 5 cut(s) 189, 295, 400, 434, 1146
HapII CCGG 1 cut(s) 1948
HgaI GACGC 3 cut(s) 534, 585, 599
HhaI GCGC 2 cut(s) 1439, 1977
Hin1I GRCGYC 1 cut(s) 596
Hin6I GCGC 2 cut(s) 1437, 1975
HinP1I GCGC 2 cut(s) 1437, 1975
HindIII AAGCTT 1 cut(s) 1826
HinfI GANTC 3 cut(s) 532, 970, 1623
HpaII CCGG 1 cut(s) 1948
HphI GGTGA 6 cut(s) 60, 403, 499, 736, 1481, 1743
Hpy166II GTNNAC 3 cut(s) 411, 1517, 1702
Hpy188I TCNGA 3 cut(s) 604, 1221, 1844
Hpy188III TCNNGA 4 cut(s) 121, 178, 197, 1177
Hpy8I GTNNAC 3 cut(s) 411, 1517, 1702
Hpy99I CGWCG 1 cut(s) 601
HpyCH4III ACNGT 3 cut(s) 1820, 1910, 1970
HpyCH4IV ACGT 1 cut(s) 1519
HpyF10VI GCNNNNNNNGC 5 cut(s) 356, 935, 1138, 1157, 1232
HpyF3I CTNAG 7 cut(s) 179, 375, 500, 666, 786, 1229, 1311
HpySE526I ACGT 1 cut(s) 1519
Hsp92I GRCGYC 1 cut(s) 596
HspAI GCGC 2 cut(s) 1437, 1975
KpnI GGTACC 1 cut(s) 1816
Ksp22I TGATCA 2 cut(s) 321, 955
Kzo9I GATC 2 cut(s) 321, 955
LmnI GCTCC 1 cut(s) 947
Lsp1109I GCAGC 3 cut(s) 674, 916, 1424
LweI GCATC 6 cut(s) 748, 864, 997, 1147, 1170, 1698
MaeI CTAG 4 cut(s) 113, 584, 738, 1407
MaeII ACGT 1 cut(s) 1519
MaeIII GTNAC 2 cut(s) 1520, 1677
MalI GATC 2 cut(s) 323, 957
MboI GATC 2 cut(s) 321, 955
MboII GAAGA 7 cut(s) 518, 898, 1000, 1165, 1379, 1621, 1897
MfeI CAATTG 2 cut(s) 1398, 1833
MhlI GDGCHC 5 cut(s) 516, 952, 1243, 1323, 1429
MluI ACGCGT 1 cut(s) 1524
MmeI TCCRAC 1 cut(s) 596
Mph1103I ATGCAT 2 cut(s) 1143, 1162
MroXI GAANNNNTTC 1 cut(s) 2002
MseI TTAA 3 cut(s) 696, 984, 1851
MslI CAYNNNNRTG 2 cut(s) 480, 1455
MspA1I CMGCKG 1 cut(s) 1415
MspI CCGG 1 cut(s) 1948
MspR9I CCNGG 4 cut(s) 397, 1620, 1863, 1949
MunI CAATTG 2 cut(s) 1398, 1833
Mva1269I GAATGC 4 cut(s) 625, 721, 1120, 1228
MvaI CCWGG 3 cut(s) 397, 1620, 1863
MvnI CGCG 2 cut(s) 593, 1526
MwoI GCNNNNNNNGC 5 cut(s) 356, 935, 1138, 1157, 1232
NciI CCSGG 1 cut(s) 1949
NcoI CCATGG 1 cut(s) 166
NdeII GATC 2 cut(s) 321, 955
NlaIV GGNNCC 7 cut(s) 217, 1021, 1200, 1426, 1503, 1814, 1967
NmeAIII GCCGAG 1 cut(s) 1172
NmuCI GTSAC 1 cut(s) 1677
NsiI ATGCAT 2 cut(s) 1143, 1162
NspI RCATGY 2 cut(s) 485, 691
PceI AGGCCT 2 cut(s) 400, 434
PciI ACATGT 1 cut(s) 481
PctI GAATGC 4 cut(s) 625, 721, 1120, 1228
PdmI GAANNNNTTC 1 cut(s) 2002
PfeI GAWTC 3 cut(s) 532, 970, 1623
PfoI TCCNGGA 1 cut(s) 1618
PkrI GCNGC 4 cut(s) 595, 664, 931, 1414
PscI ACATGT 1 cut(s) 481
Psp6I CCWGG 3 cut(s) 395, 1618, 1861
PspFI CCCAGC 1 cut(s) 527
PspGI CCWGG 3 cut(s) 395, 1618, 1861
PspN4I GGNNCC 7 cut(s) 217, 1021, 1200, 1426, 1503, 1814, 1967
PspPI GGNCC 2 cut(s) 1020, 1966
PstI CTGCAG 1 cut(s) 440
PvuII CAGCTG 1 cut(s) 1415
RsaI GTAC 5 cut(s) 638, 1014, 1383, 1814, 1848
RsaNI GTAC 5 cut(s) 637, 1013, 1382, 1813, 1847
RseI CAYNNNNRTG 2 cut(s) 480, 1455
SaqAI TTAA 3 cut(s) 696, 984, 1851
SatI GCNGC 4 cut(s) 594, 663, 930, 1413
Sau3AI GATC 2 cut(s) 321, 955
Sau96I GGNCC 2 cut(s) 1020, 1966
ScaI AGTACT 2 cut(s) 1014, 1848
ScrFI CCNGG 4 cut(s) 397, 1620, 1863, 1949
SduI GDGCHC 5 cut(s) 516, 952, 1243, 1323, 1429
SfaNI GCATC 6 cut(s) 748, 864, 997, 1147, 1170, 1698
SfcI CTRYAG 1 cut(s) 436
SinI GGWCC 2 cut(s) 1020, 1966
SmiMI CAYNNNNRTG 2 cut(s) 480, 1455
SmlI CTYRAG 3 cut(s) 155, 1764, 1891
SmoI CTYRAG 3 cut(s) 155, 1764, 1891
SseBI AGGCCT 2 cut(s) 400, 434
SsiI CCGC 5 cut(s) 593, 767, 1023, 1505, 1810
SspMI CTAG 4 cut(s) 113, 584, 738, 1407
StuI AGGCCT 2 cut(s) 400, 434
StyD4I CCNGG 4 cut(s) 395, 1618, 1861, 1947
StyI CCWWGG 2 cut(s) 166, 899
TaaI ACNGT 3 cut(s) 1820, 1910, 1970
TaiI ACGT 1 cut(s) 1522
TaqI TCGA 2 cut(s) 917, 1106
TatI WGTACW 2 cut(s) 1012, 1846
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 3 cut(s) 532, 970, 1623
Tru1I TTAA 3 cut(s) 696, 984, 1851
Tru9I TTAA 3 cut(s) 696, 984, 1851
TscAI CASTG 4 cut(s) 357, 459, 1812, 1825
TseFI GTSAC 1 cut(s) 1677
TseI GCWGC 3 cut(s) 662, 929, 1412
Tsp45I GTSAC 1 cut(s) 1677
TspGWI ACGGA 3 cut(s) 1108, 1754, 1865
TspRI CASTG 4 cut(s) 357, 459, 1812, 1825
VpaK11BI GGWCC 2 cut(s) 1020, 1966
XapI RAATTY 5 cut(s) 391, 471, 905, 1387, 1658
XceI RCATGY 2 cut(s) 485, 691
XmiI GTMKAC 1 cut(s) 1701
XmnI GAANNNNTTC 1 cut(s) 2002
XspI CTAG 4 cut(s) 113, 584, 738, 1407
ZrmI AGTACT 2 cut(s) 1014, 1848
Zsp2I ATGCAT 2 cut(s) 1143, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.