Rmu_sc0005514.1_g000004
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005514.1
OG0000240
Physical Location & Seq
Reverse (-)
8167 .. 8867
701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005514.1_g000004.1.cds

Sequence Viewer

Length: 600 bp
atgcatccgaggagtggtggcgtggcaaaattgagaaaaacaaggaatatgcaatgttcaaagaaaaaggggattacacctgagtttgaagtcaagttggataagatgttcatgggtattgcagccaccggaaagcatgcatatgcaccatcttctacactacccattcctagaagtccagagcaaggtggcaaccttgaaggtagtggtgactctgaggacaatgatcaacctaaaaccactctacctaaaagaaaaagaaatgagagagctgagaaaggtaaaggacaaataccaaaaaaggaaaaggtgggaggtgctgcttatttggctaaacaaattgaccgaatgtgtgagtcaattgacagtagaactacaacaacttcaatgatcaatacaggtgtgcaggaaggtggagggactagtattaaggaagtgatgaaggatgtcacttcattgcctggagttgagcagggtagtaggctgtggttttttaccacccgattgtttttaagttcagagaagagagagatgtattgcaccattgatgatcctaacttgaagttggagtggctgaaatttgagatgaatgaaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

199

Amino Acids

22.18

Weight (kDa)

9.45

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 14, 185
AgsI TTSAA 5 cut(s) 60, 89, 200, 387, 562
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 1 cut(s) 460
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 122, 320
ApoI RAATTY 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 221
BbvI GCAGC 2 cut(s) 134, 307
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 462
BclI TGATCA 2 cut(s) 226, 390
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 2 cut(s) 171, 423
BisI GCNGC 2 cut(s) 123, 321
BlsI GCNGC 2 cut(s) 124, 322
Bme1390I CCNGG 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 185
Bse3DI GCAATG 2 cut(s) 59, 455
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 4, 451
BseLI CCNNNNNNNGG 2 cut(s) 14, 185
BseMI GCAATG 2 cut(s) 59, 455
BseMII CTCAG 3 cut(s) 72, 207, 264
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 134, 307
BsgI GTGCAG 1 cut(s) 425
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 14, 185
BsmFI GGGAC 1 cut(s) 433
Bsp143I GATC 3 cut(s) 226, 390, 550
BspCNI CTCAG 3 cut(s) 73, 208, 265
BspPI GGATC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 59, 455
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 3 cut(s) 226, 390, 550
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 81, 216, 273
BstF5I GGATG 2 cut(s) 4, 451
BstKTI GATC 3 cut(s) 229, 393, 553
BstMBI GATC 3 cut(s) 226, 390, 550
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 134, 307
BtsCI GGATG 2 cut(s) 4, 451
Cac8I GCNNGC 1 cut(s) 138
CviAII CATG 2 cut(s) 112, 137
CviJI RGCY 5 cut(s) 125, 272, 332, 484, 574
CviKI_1 RGCY 5 cut(s) 125, 272, 332, 484, 574
DdeI CTNAG 3 cut(s) 81, 216, 273
DpnI GATC 3 cut(s) 228, 392, 552
DpnII GATC 3 cut(s) 226, 390, 550
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 460
EcoT22I ATGCAT 2 cut(s) 6, 142
FaeI CATG 2 cut(s) 115, 140
FaiI YATR 5 cut(s) 50, 113, 138, 142, 144
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 111, 136
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 226, 390
Fnu4HI GCNGC 2 cut(s) 123, 321
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 2 cut(s) 123, 321
FspBI CTAG 2 cut(s) 171, 423
GluI GCNGC 2 cut(s) 123, 321
GsuI CTGGAG 1 cut(s) 483
HapII CCGG 1 cut(s) 129
Hin1II CATG 2 cut(s) 115, 140
HinfI GANTC 2 cut(s) 212, 356
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 3 cut(s) 9, 217, 520
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 194, 404, 436
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 7 cut(s) 4, 52, 122, 140, 146, 406, 540
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 3 cut(s) 81, 216, 273
Hsp92II CATG 2 cut(s) 115, 140
Ksp22I TGATCA 2 cut(s) 226, 390
Kzo9I GATC 3 cut(s) 226, 390, 550
LpnPI CCDG 8 cut(s) 93, 142, 192, 384, 392, 447, 458, 474
Lsp1109I GCAGC 2 cut(s) 134, 307
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 171, 423
MaeIII GTNAC 2 cut(s) 209, 448
MalI GATC 3 cut(s) 228, 392, 552
MboI GATC 3 cut(s) 226, 390, 550
MboII GAAGA 2 cut(s) 144, 535
MfeI CAATTG 1 cut(s) 360
MluCI AATT 4 cut(s) 29, 339, 360, 578
MlyI GAGTC 2 cut(s) 206, 365
MmeI TCCRAC 2 cut(s) 78, 546
MnlI CCTC 4 cut(s) 3, 211, 308, 410
Mph1103I ATGCAT 2 cut(s) 6, 142
MseI TTAA 2 cut(s) 429, 512
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 462
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeI CATATG 1 cut(s) 142
NdeII GATC 3 cut(s) 226, 390, 550
NlaIII CATG 2 cut(s) 115, 140
NmuCI GTSAC 2 cut(s) 209, 448
NsiI ATGCAT 2 cut(s) 6, 142
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 124, 322
PleI GAGTC 2 cut(s) 206, 364
PpsI GAGTC 2 cut(s) 206, 364
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 429, 512
SatI GCNGC 2 cut(s) 123, 321
Sau3AI GATC 3 cut(s) 226, 390, 550
SchI GAGTC 2 cut(s) 206, 365
ScrFI CCNGG 1 cut(s) 462
SfaNI GCATC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 422
SphI GCATGC 1 cut(s) 140
Sse9I AATT 4 cut(s) 29, 339, 360, 578
SspMI CTAG 2 cut(s) 171, 423
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 368
TaqII GACCGA 1 cut(s) 360
TasI AATT 4 cut(s) 29, 339, 360, 578
Tru1I TTAA 2 cut(s) 429, 512
Tru9I TTAA 2 cut(s) 429, 512
TseFI GTSAC 2 cut(s) 209, 448
TseI GCWGC 2 cut(s) 122, 320
Tsp45I GTSAC 2 cut(s) 209, 448
TspDTI ATGAA 3 cut(s) 100, 444, 455
XapI RAATTY 1 cut(s) 578
XceI RCATGY 1 cut(s) 140
XspI CTAG 2 cut(s) 171, 423
Zsp2I ATGCAT 2 cut(s) 6, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.