Prupe.1G173000_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000240
Physical Location & Seq
Reverse (-)
14456264 .. 14457994
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G173000.1

Sequence Viewer

Length: 768 bp
ATGCTTTTTCCGGCTATATGGAATAATCAGAATACAACTATATTTTGTGACATGTGTATCAAGGAGGTGGAGGCAGGTAATCGTCTTGGTACTCACTTTAAGAAAGAAGGATGGGAAAATGTGAGGATTAGCTTGAGTAAAGAGATAGGAGCCGAGTATGATAAATCACAATTGAAAAATAAGTGGGATGCACTTAAGGAACAATGGAAAATATGGAAAGAACTAATTGGAAAAGAAACTGGTCTTGGAAAGGGTATTAGTCCTGATATGGAAGAGAAGTTTGATAGAATGTTCATGAACACCACTGCCACTGGTGACCATGCTTGGGCACCTTTATCTGGTGTACTTCCAACTCATGATTCATCCGAATGTGATGGTATTCTACTCAACAGTGGTGATGATTCTGATGATCCTGTATACGTACCAGATGAAACAATTCAAGTTACTGAAAAATCTTGTGGGAAGGGGAAAAAGAGAACAAATCAACAACTTGATACACAGGTTAAGAAAGAGAAGAATGGAAATAGAGTTGCTACAAAAGTGGGGAAGGTAGGAGGTGTTGTTAAATTGTCACAACAAATTGAGCGGATGGTTGATGTAATAGAGAATAGGAGTACAACTTCAGTGATGATGAAAAGGTCCCAAGGTAGCAGCATTGCTGAAGTGATGAAAGTAGTTTTGTCTTTACCTAGTGCAGGGCCTGGGAGCCATTTGGTTATTCCTAAATCAAGAGAAAAGAGAAATGTTCACAAATATGGAAGATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

256

Amino Acids

28.45

Weight (kDa)

8.89

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 328
AccBSI CCGCTC 1 cut(s) 586
AccI GTMKAC 1 cut(s) 417
AciI CCGC 1 cut(s) 586
AclWI GGATC 2 cut(s) 404, 756
AcuI CTGAAG 2 cut(s) 606, 681
AfaI GTAC 4 cut(s) 91, 345, 423, 616
AfiI CCNNNNNNNGG 3 cut(s) 325, 338, 695
AflII CTTAAG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 2 cut(s) 175, 440
AjnI CCWGG 1 cut(s) 700
AjuI GAANNNNNNNTTGG 4 cut(s) 228, 260, 343, 375
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
AlwI GGATC 2 cut(s) 404, 756
AlwNI CAGNNNCTG 1 cut(s) 701
AoxI GGCC 1 cut(s) 698
ApeKI GCWGC 1 cut(s) 651
Asp700I GAANNNNTTC 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 639, 698
AsuHPI GGTGA 2 cut(s) 326, 407
AvaII GGWCC 1 cut(s) 639
BaeGI GKGCMC 1 cut(s) 331
BaeI ACNNNNGTAYC 4 cut(s) 40, 73, 486, 519
BanI GGYRCC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 663
BccI CCATC 3 cut(s) 105, 368, 583
BciT130I CCWGG 1 cut(s) 702
BfaI CTAG 1 cut(s) 690
BfrI CTTAAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 1 cut(s) 652
BlsI GCNGC 1 cut(s) 653
Bme1390I CCNGG 1 cut(s) 702
Bme18I GGWCC 1 cut(s) 639
BmgT120I GGNCC 2 cut(s) 639, 698
BmiI GGNNCC 4 cut(s) 151, 330, 641, 707
BmrFI CCNGG 1 cut(s) 702
BmsI GCATC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 643, 701
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 338, 695
Bse1I ACTGG 2 cut(s) 244, 316
Bse3DI GCAATG 1 cut(s) 654
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 2 cut(s) 643, 701
BseGI GGATG 4 cut(s) 116, 193, 362, 594
BseLI CCNNNNNNNGG 3 cut(s) 325, 338, 695
BseMI GCAATG 1 cut(s) 654
BseNI ACTGG 2 cut(s) 244, 316
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 663
BsgI GTGCAG 1 cut(s) 714
BshFI GGCC 1 cut(s) 700
BshNI GGYRCC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 3 cut(s) 325, 338, 695
BsmFI GGGAC 1 cut(s) 625
BsnI GGCC 1 cut(s) 700
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 2 cut(s) 409, 761
BspACI CCGC 1 cut(s) 586
BspANI GGCC 1 cut(s) 700
BspHI TCATGA 2 cut(s) 294, 355
BspLI GGNNCC 4 cut(s) 151, 330, 641, 707
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 404, 756
BspT107I GGYRCC 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 2 cut(s) 244, 316
BssECI CCNNGG 2 cut(s) 643, 701
BssMI GATC 2 cut(s) 409, 761
BssNAI GTATAC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 643
Bst1107I GTATAC 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 194
BstBAI YACGTR 1 cut(s) 421
BstEII GGTNACC 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 4 cut(s) 116, 193, 362, 594
BstKTI GATC 2 cut(s) 412, 764
BstMBI GATC 2 cut(s) 409, 761
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 1 cut(s) 55
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 700
BstSLI GKGCMC 1 cut(s) 331
BstSNI TACGTA 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 761
BstYI RGATCY 1 cut(s) 761
BstZ17I GTATAC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 700
BtsCI GGATG 4 cut(s) 116, 193, 362, 594
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 4 cut(s) 303, 309, 397, 630
BveI ACCTGC 1 cut(s) 65
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 2 cut(s) 294, 355
Cfr13I GGNCC 2 cut(s) 639, 698
Csp6I GTAC 4 cut(s) 90, 344, 422, 615
CviAII CATG 4 cut(s) 52, 295, 320, 356
CviJI RGCY 5 cut(s) 14, 132, 152, 700, 708
CviKI_1 RGCY 5 cut(s) 14, 132, 152, 700, 708
CviQI GTAC 4 cut(s) 90, 344, 422, 615
DpnI GATC 2 cut(s) 411, 763
DpnII GATC 2 cut(s) 409, 761
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco105I TACGTA 1 cut(s) 421
Eco130I CCWWGG 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 639
Eco57I CTGAAG 2 cut(s) 606, 681
Eco91I GGTNACC 1 cut(s) 314
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoO109I RGGNCCY 2 cut(s) 639, 698
EcoO65I GGTNACC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 4 cut(s) 55, 298, 323, 359
FaqI GGGAC 1 cut(s) 625
FatI CATG 4 cut(s) 51, 294, 319, 355
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 1 cut(s) 652
FokI GGATG 4 cut(s) 123, 200, 349, 601
Fsp4HI GCNGC 1 cut(s) 652
FspBI CTAG 1 cut(s) 690
GluI GCNGC 1 cut(s) 652
HaeIII GGCC 1 cut(s) 700
HapII CCGG 1 cut(s) 11
Hin1II CATG 4 cut(s) 55, 298, 323, 359
HinfI GANTC 2 cut(s) 359, 401
HpaII CCGG 1 cut(s) 11
HphI GGTGA 2 cut(s) 326, 407
Hpy166II GTNNAC 3 cut(s) 344, 418, 748
Hpy188I TCNGA 3 cut(s) 30, 367, 406
Hpy188III TCNNGA 4 cut(s) 263, 295, 356, 729
Hpy8I GTNNAC 3 cut(s) 344, 418, 748
HpyAV CCTTC 3 cut(s) 101, 457, 541
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 191, 695
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 4 cut(s) 55, 298, 323, 359
Kzo9I GATC 2 cut(s) 409, 761
LmnI GCTCC 2 cut(s) 149, 705
Lsp1109I GCAGC 1 cut(s) 663
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 690
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 4 cut(s) 47, 314, 442, 570
MalI GATC 2 cut(s) 411, 763
MbiI CCGCTC 1 cut(s) 586
MboI GATC 2 cut(s) 409, 761
MboII GAAGA 2 cut(s) 284, 526
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 1 cut(s) 761
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 5 cut(s) 170, 225, 435, 566, 579
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 4 cut(s) 58, 64, 117, 548
MroXI GAANNNNTTC 1 cut(s) 435
MseI TTAA 4 cut(s) 99, 195, 504, 564
MslI CAYNNNNRTG 2 cut(s) 367, 753
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 702
NdeII GATC 2 cut(s) 409, 761
NlaIII CATG 4 cut(s) 55, 298, 323, 359
NlaIV GGNNCC 4 cut(s) 151, 330, 641, 707
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 3 cut(s) 47, 314, 570
NspI RCATGY 1 cut(s) 55
PagI TCATGA 2 cut(s) 294, 355
PciI ACATGT 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 359, 401
PkrI GCNGC 1 cut(s) 653
Ppu21I YACGTR 1 cut(s) 421
PpuMI RGGWCCY 1 cut(s) 639
PscI ACATGT 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 700
PspEI GGTNACC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 4 cut(s) 151, 330, 641, 707
PspPI GGNCC 2 cut(s) 639, 698
PspPPI RGGWCCY 1 cut(s) 639
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 1 cut(s) 761
RsaI GTAC 4 cut(s) 91, 345, 423, 616
RsaNI GTAC 4 cut(s) 90, 344, 422, 615
RseI CAYNNNNRTG 2 cut(s) 367, 753
SaqAI TTAA 4 cut(s) 99, 195, 504, 564
SatI GCNGC 1 cut(s) 652
Sau3AI GATC 2 cut(s) 409, 761
Sau96I GGNCC 2 cut(s) 639, 698
ScrFI CCNGG 1 cut(s) 702
SduI GDGCHC 1 cut(s) 331
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 639
SmiMI CAYNNNNRTG 2 cut(s) 367, 753
SmlI CTYRAG 2 cut(s) 133, 194
SmoI CTYRAG 2 cut(s) 133, 194
SnaBI TACGTA 1 cut(s) 421
Sse9I AATT 5 cut(s) 170, 225, 435, 566, 579
SsiI CCGC 1 cut(s) 586
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 1 cut(s) 700
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 1 cut(s) 423
TasI AATT 5 cut(s) 170, 225, 435, 566, 579
TatI WGTACW 2 cut(s) 343, 614
TfiI GAWTC 2 cut(s) 359, 401
Tru1I TTAA 4 cut(s) 99, 195, 504, 564
Tru9I TTAA 4 cut(s) 99, 195, 504, 564
TscAI CASTG 4 cut(s) 310, 316, 397, 630
TseFI GTSAC 3 cut(s) 47, 314, 570
TseI GCWGC 1 cut(s) 651
Tsp45I GTSAC 3 cut(s) 47, 314, 570
TspDTI ATGAA 6 cut(s) 283, 311, 351, 444, 647, 683
TspRI CASTG 4 cut(s) 310, 316, 397, 630
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 639
XagI CCTNNNNNAGG 1 cut(s) 693
XceI RCATGY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 435
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.