Prupe.8G016500_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000240
Physical Location & Seq
Reverse (-)
1536068 .. 1537970
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G016500.1

Sequence Viewer

Length: 981 bp
ATGTGCACACAGATGGGAAGGAAGAACAATAAGATGAATTGTGTTGAAAAGGTTGGAAGTAGATCACTAGCTGCGACCATATGGAATGATCTAAGTGTAGCTATATTCTGTGACCTGTGTATTAAGGAGGTGGAGGCAGGACATCCTCCTGACACTCACTTTAGCAAAGTTGGATGGAAAAATTTGGTTGCACACTTAAGTAAGGAGACAGGAAAAGACTATGATAAACCACAACTGAAAAATAAGTGGGATTCACTTAAAGCTGAATGGAAAATGTGGAAAGAACTAATTGGAAAGGAAACTGGTTTAGGATGGAACCCCTCGAAGAATACCATCGATGCATCTGATGAATGGTGGCATAGTAGAGTTCAGGTAGATTCTAATTATGCAAAATTTCGAAACAAAGGCATTAAACCTGAGATGGTGGAGAAGCTAGATAGGATGTTCTTGAAGACCAGAACCACCAGGGAACATGCTAAGGCACCCTTGTTTGGTGTTCCATCTGAAAGTGAGGAAGCATCCAAAGATGATGCTGTTAAACTCAAAGGTAGGGGTGATTCTGAACAGTTCATCCCAATTCTGACCACTCCAGCTACAAAAAGGTCATCAGGGAGGGGGAAAAGGAGAACAGTTCAAGAAGCTGACACTCAAGTTAGGAAAGAAAAGAAAGGCAAAAGAGTTGCTATAGGTGGGCAGAAGGTTGGAGGCACTGTGAAATTGTCAGAAAAGATTGATCACCTTCTTGAGTCAGTTGACAGTAGTAGTTCTGTAACTTTTAAATTGGAGGAAGGTGTACATGGCAGTAGCATTCCTGAAGTGATGCAAGCAGTTCAATCTTTACCTGGAGCAGAACCCGGTAGCAAATTGTGGTTGTTTGCAACTCGGTTATTTTTATCTGAAGACAAGAGAGAGATGTTCACTTACATGAAAGATCCTGACATTAAGCTTCAATGGCTTAATTATGAATTTGCTGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

327

Amino Acids

36.9

Weight (kDa)

9.24

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AclWI GGATC 1 cut(s) 926
AcsI RAATTY 3 cut(s) 181, 392, 965
AcuI CTGAAG 2 cut(s) 834, 918
AfaI GTAC 1 cut(s) 795
AfiI CCNNNNNNNGG 1 cut(s) 491
AflII CTTAAG 1 cut(s) 196
AgsI TTSAA 5 cut(s) 47, 451, 635, 833, 950
AjnI CCWGG 2 cut(s) 464, 841
AloI GAACNNNNNNTCC 2 cut(s) 555, 587
AluBI AGCT 7 cut(s) 71, 101, 263, 433, 593, 641, 946
AluI AGCT 7 cut(s) 71, 101, 263, 433, 593, 641, 946
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 200
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 926
ApaLI GTGCAC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 3 cut(s) 181, 392, 965
AsuC2I CCSGG 1 cut(s) 855
AsuHPI GGTGA 2 cut(s) 566, 728
AsuII TTCGAA 1 cut(s) 397
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 481
BbsI GAAGAC 2 cut(s) 458, 906
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 58
BccI CCATC 6 cut(s) 7, 168, 306, 341, 415, 508
BciT130I CCWGG 2 cut(s) 466, 843
BclI TGATCA 1 cut(s) 733
BcnI CCSGG 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 2 cut(s) 68, 434
BfmI CTRYAG 1 cut(s) 684
BfrI CTTAAG 1 cut(s) 196
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 3 cut(s) 466, 843, 855
BmiI GGNNCC 2 cut(s) 317, 483
BmrFI CCNGG 3 cut(s) 466, 843, 855
BmsI GCATC 5 cut(s) 328, 350, 520, 527, 810
BpiI GAAGAC 2 cut(s) 458, 906
BpmI CTGGAG 2 cut(s) 573, 864
Bpu10I CCTNAGC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 397
BpuEI CTTGAG 2 cut(s) 633, 764
BpuMI CCSGG 1 cut(s) 855
Bsa29I ATCGAT 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 307
BseBI CCWGG 2 cut(s) 466, 843
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 6 cut(s) 142, 179, 317, 447, 518, 570
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 307
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 481
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 855
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 807
Bsp119I TTCGAA 1 cut(s) 397
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 4 cut(s) 62, 88, 733, 931
BspCNI CTCAG 1 cut(s) 409
BspDI ATCGAT 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 317, 483
BspPI GGATC 1 cut(s) 926
BspT104I TTCGAA 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 481
BspTI CTTAAG 1 cut(s) 196
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 4 cut(s) 62, 88, 733, 931
Bst2UI CCWGG 2 cut(s) 466, 843
Bst4CI ACNGT 4 cut(s) 567, 631, 712, 758
BstAFI CTTAAG 1 cut(s) 196
BstAUI TGTACA 1 cut(s) 793
BstBI TTCGAA 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 825
BstDEI CTNAG 3 cut(s) 92, 417, 477
BstF5I GGATG 6 cut(s) 142, 179, 317, 447, 518, 570
BstKTI GATC 4 cut(s) 65, 91, 736, 934
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 4 cut(s) 62, 88, 733, 931
BstMWI GCNNNNNNNGC 1 cut(s) 952
BstNI CCWGG 2 cut(s) 466, 843
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 3 cut(s) 464, 841, 853
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 2 cut(s) 458, 906
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
Bsu15I ATCGAT 1 cut(s) 336
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 6 cut(s) 142, 179, 317, 447, 518, 570
BtsIMutI CAGTG 1 cut(s) 708
Cac8I GCNNGC 1 cut(s) 825
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 1 cut(s) 794
CviAII CATG 3 cut(s) 473, 797, 925
CviJI RGCY 8 cut(s) 71, 101, 263, 433, 593, 641, 946, 955
CviKI_1 RGCY 8 cut(s) 71, 101, 263, 433, 593, 641, 946, 955
CviQI GTAC 1 cut(s) 794
DdeI CTNAG 3 cut(s) 92, 417, 477
DpnI GATC 4 cut(s) 64, 90, 735, 933
DpnII GATC 4 cut(s) 62, 88, 733, 931
DraI TTTAAA 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 834, 918
EcoRII CCWGG 2 cut(s) 464, 841
EcoT22I ATGCAT 1 cut(s) 343
FaeI CATG 3 cut(s) 476, 800, 928
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FatI CATG 3 cut(s) 472, 796, 924
FauNDI CATATG 1 cut(s) 80
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 6 cut(s) 129, 186, 324, 454, 505, 557
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 68, 434
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 2 cut(s) 573, 864
HapII CCGG 1 cut(s) 855
Hin1II CATG 3 cut(s) 476, 800, 928
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 4 cut(s) 251, 377, 557, 746
HpaII CCGG 1 cut(s) 855
HphI GGTGA 2 cut(s) 566, 728
Hpy166II GTNNAC 4 cut(s) 6, 754, 794, 918
Hpy188I TCNGA 6 cut(s) 346, 505, 562, 582, 724, 898
Hpy188III TCNNGA 6 cut(s) 149, 448, 635, 743, 812, 935
Hpy8I GTNNAC 4 cut(s) 6, 754, 794, 918
HpyAV CCTTC 4 cut(s) 12, 691, 749, 782
HpyCH4III ACNGT 4 cut(s) 567, 631, 712, 758
HpyCH4V TGCA 6 cut(s) 6, 191, 341, 389, 823, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 952
HpyF3I CTNAG 3 cut(s) 92, 417, 477
Hsp92II CATG 3 cut(s) 476, 800, 928
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 4 cut(s) 62, 88, 733, 931
LmnI GCTCC 1 cut(s) 845
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 5 cut(s) 328, 350, 520, 527, 810
MaeI CTAG 2 cut(s) 68, 434
MaeIII GTNAC 2 cut(s) 110, 769
MalI GATC 4 cut(s) 64, 90, 735, 933
MboI GATC 4 cut(s) 62, 88, 733, 931
MboII GAAGA 4 cut(s) 34, 337, 463, 911
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 755
MmeI TCCRAC 3 cut(s) 34, 151, 682
MnlI CCTC 8 cut(s) 121, 127, 156, 331, 505, 606, 698, 778
Mph1103I ATGCAT 1 cut(s) 343
MseI TTAA 8 cut(s) 123, 197, 258, 411, 537, 777, 942, 957
MslI CAYNNNNRTG 2 cut(s) 11, 923
MspCI CTTAAG 1 cut(s) 196
MspI CCGG 1 cut(s) 855
MspR9I CCNGG 3 cut(s) 466, 843, 855
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 2 cut(s) 466, 843
MwoI GCNNNNNNNGC 1 cut(s) 952
NciI CCSGG 1 cut(s) 855
NdeI CATATG 1 cut(s) 80
NdeII GATC 4 cut(s) 62, 88, 733, 931
NlaIII CATG 3 cut(s) 476, 800, 928
NlaIV GGNNCC 2 cut(s) 317, 483
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 476
NspV TTCGAA 1 cut(s) 397
PctI GAATGC 1 cut(s) 807
PfeI GAWTC 3 cut(s) 251, 377, 557
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
Psp6I CCWGG 2 cut(s) 464, 841
PspGI CCWGG 2 cut(s) 464, 841
PspN4I GGNNCC 2 cut(s) 317, 483
PsuI RGATCY 1 cut(s) 931
RsaI GTAC 1 cut(s) 795
RsaNI GTAC 1 cut(s) 794
RseI CAYNNNNRTG 2 cut(s) 11, 923
SaqAI TTAA 8 cut(s) 123, 197, 258, 411, 537, 777, 942, 957
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 4 cut(s) 62, 88, 733, 931
SchI GAGTC 1 cut(s) 755
ScrFI CCNGG 3 cut(s) 466, 843, 855
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 5 cut(s) 328, 350, 520, 527, 810
SfcI CTRYAG 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 11, 923
SmlI CTYRAG 3 cut(s) 196, 648, 743
SmoI CTYRAG 3 cut(s) 196, 648, 743
SspMI CTAG 2 cut(s) 68, 434
StyD4I CCNGG 3 cut(s) 464, 841, 853
TaaI ACNGT 4 cut(s) 567, 631, 712, 758
TaqI TCGA 3 cut(s) 323, 336, 397
TatI WGTACW 1 cut(s) 793
TfiI GAWTC 3 cut(s) 251, 377, 557
Tru1I TTAA 8 cut(s) 123, 197, 258, 411, 537, 777, 942, 957
Tru9I TTAA 8 cut(s) 123, 197, 258, 411, 537, 777, 942, 957
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 5 cut(s) 50, 363, 559, 941, 978
TspRI CASTG 1 cut(s) 715
Vha464I CTTAAG 1 cut(s) 196
VneI GTGCAC 1 cut(s) 4
XapI RAATTY 3 cut(s) 181, 392, 965
XceI RCATGY 1 cut(s) 476
XspI CTAG 2 cut(s) 68, 434
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.