Rmu_sc0003465.1_g000054
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003465.1
OG0000240
Physical Location & Seq
Reverse (-)
255400 .. 256099
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003465.1_g000054.1.cds

Sequence Viewer

Length: 600 bp
atgcatccgaggaggggtggcgtggcaaaattgagaaaaacaaggaatatgcaatgttcaaagaaaaaggggattacacctgagtttgaagtcaagttggataagatgttcatgggtattgcagccaccggaaagcatgcatatgcaccatcttctacactacccattcctagaagtccagagcaaggtggcaaccttgaaggtagtggtgactctgaggacaatgatcaacctaaaaccactctacctaaaagaaaaagaaatgagagagctgagaaaggtaaaggacaaataccaaaaaaggaaaaggtgggaggtgctgcttatttggctaaacaaattgaccgaatgtgtgagtcaattgacagtagaactacaacaacttcaatgatcaatacaggtgtgcaggaaggtggagggactagtattaaggaagtgatgaaggatgtcacttcattgcctggagttgagcagggtagtaggctgtggttttttaccacccgattgtttttaagttcagagaagagagagatgtattgcaccattgatgatcctaacttgaagttggagtggctgaaatttgagatgaatgaaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

199

Amino Acids

22.24

Weight (kDa)

9.53

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 14, 185
AgsI TTSAA 5 cut(s) 60, 89, 200, 387, 562
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 1 cut(s) 460
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 122, 320
ApoI RAATTY 1 cut(s) 578
AsuHPI GGTGA 1 cut(s) 221
BbvI GCAGC 2 cut(s) 134, 307
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 462
BclI TGATCA 2 cut(s) 226, 390
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 2 cut(s) 171, 423
BisI GCNGC 2 cut(s) 123, 321
BlsI GCNGC 2 cut(s) 124, 322
Bme1390I CCNGG 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 462
BmsI GCATC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 185
Bse3DI GCAATG 2 cut(s) 59, 455
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 8
BseGI GGATG 2 cut(s) 4, 451
BseLI CCNNNNNNNGG 2 cut(s) 14, 185
BseMI GCAATG 2 cut(s) 59, 455
BseMII CTCAG 3 cut(s) 72, 207, 264
BseRI GAGGAG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 134, 307
BsgI GTGCAG 1 cut(s) 425
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 14, 185
BsmFI GGGAC 1 cut(s) 433
Bsp143I GATC 3 cut(s) 226, 390, 550
BspCNI CTCAG 3 cut(s) 73, 208, 265
BspPI GGATC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 59, 455
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 3 cut(s) 226, 390, 550
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 3 cut(s) 81, 216, 273
BstF5I GGATG 2 cut(s) 4, 451
BstKTI GATC 3 cut(s) 229, 393, 553
BstMBI GATC 3 cut(s) 226, 390, 550
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 134, 307
BtsCI GGATG 2 cut(s) 4, 451
Cac8I GCNNGC 1 cut(s) 138
CviAII CATG 2 cut(s) 112, 137
CviJI RGCY 5 cut(s) 125, 272, 332, 484, 574
CviKI_1 RGCY 5 cut(s) 125, 272, 332, 484, 574
DdeI CTNAG 3 cut(s) 81, 216, 273
DpnI GATC 3 cut(s) 228, 392, 552
DpnII GATC 3 cut(s) 226, 390, 550
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 460
EcoT22I ATGCAT 2 cut(s) 6, 142
FaeI CATG 2 cut(s) 115, 140
FaiI YATR 5 cut(s) 50, 113, 138, 142, 144
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 111, 136
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 226, 390
Fnu4HI GCNGC 2 cut(s) 123, 321
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 2 cut(s) 123, 321
FspBI CTAG 2 cut(s) 171, 423
GluI GCNGC 2 cut(s) 123, 321
GsuI CTGGAG 1 cut(s) 483
HapII CCGG 1 cut(s) 129
Hin1II CATG 2 cut(s) 115, 140
HinfI GANTC 2 cut(s) 212, 356
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 3 cut(s) 9, 217, 520
Hpy188III TCNNGA 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 194, 404, 436
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 7 cut(s) 4, 52, 122, 140, 146, 406, 540
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 3 cut(s) 81, 216, 273
Hsp92II CATG 2 cut(s) 115, 140
Ksp22I TGATCA 2 cut(s) 226, 390
Kzo9I GATC 3 cut(s) 226, 390, 550
LpnPI CCDG 8 cut(s) 93, 142, 192, 384, 392, 447, 458, 474
Lsp1109I GCAGC 2 cut(s) 134, 307
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 171, 423
MaeIII GTNAC 2 cut(s) 209, 448
MalI GATC 3 cut(s) 228, 392, 552
MboI GATC 3 cut(s) 226, 390, 550
MboII GAAGA 2 cut(s) 144, 535
MfeI CAATTG 1 cut(s) 360
MluCI AATT 4 cut(s) 29, 339, 360, 578
MlyI GAGTC 2 cut(s) 206, 365
MmeI TCCRAC 2 cut(s) 78, 546
MnlI CCTC 5 cut(s) 3, 6, 211, 308, 410
Mph1103I ATGCAT 2 cut(s) 6, 142
MseI TTAA 2 cut(s) 429, 512
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 462
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeI CATATG 1 cut(s) 142
NdeII GATC 3 cut(s) 226, 390, 550
NlaIII CATG 2 cut(s) 115, 140
NmuCI GTSAC 2 cut(s) 209, 448
NsiI ATGCAT 2 cut(s) 6, 142
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 124, 322
PleI GAGTC 2 cut(s) 206, 364
PpsI GAGTC 2 cut(s) 206, 364
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 429, 512
SatI GCNGC 2 cut(s) 123, 321
Sau3AI GATC 3 cut(s) 226, 390, 550
SchI GAGTC 2 cut(s) 206, 365
ScrFI CCNGG 1 cut(s) 462
SfaNI GCATC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 422
SphI GCATGC 1 cut(s) 140
Sse9I AATT 4 cut(s) 29, 339, 360, 578
SspMI CTAG 2 cut(s) 171, 423
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 1 cut(s) 368
TaqII GACCGA 1 cut(s) 360
TasI AATT 4 cut(s) 29, 339, 360, 578
Tru1I TTAA 2 cut(s) 429, 512
Tru9I TTAA 2 cut(s) 429, 512
TseFI GTSAC 2 cut(s) 209, 448
TseI GCWGC 2 cut(s) 122, 320
Tsp45I GTSAC 2 cut(s) 209, 448
TspDTI ATGAA 3 cut(s) 100, 444, 455
XapI RAATTY 1 cut(s) 578
XceI RCATGY 1 cut(s) 140
XspI CTAG 2 cut(s) 171, 423
Zsp2I ATGCAT 2 cut(s) 6, 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.