Rorug05G0248000
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000240
Physical Location & Seq
Reverse (-)
27193926 .. 27196270
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0248000.1

Sequence Viewer

Length: 780 bp
ATGGCCTCCATGCTTATGGCAGCAACTGCTAGCTCCAGCACTCTTCTTAGACCAAACTCCAACTCTCTTAGGGATGTTGTCCCCATGGGACCTGGGAAATACACCATGGGGAATGAGTTGTGGTATGGACCAGACAGAGTGAAGTACTTGGGACCCTTTTCTGCTCAGACTCCTTCATACCTCACCGGAGAATTCCCCGGTGACTACGGATGGGACACCGCAGGGTTGTCAGCTGACCCAGAGGCCTTTGCTAAGAACAGGGCTCTTGAGGTTATCCACGGGCGGTGGGCAATGCTCGGAGCATTCGGCTGCATCACCCCAGAAGTTCTTGAGAAATGGGTGAGAGTGGACTTCAAAGAACCAGTCTGGTTCAAAGCCGGGGCTCAGATTTTCTCAGAAGGTGGTCTTGACTATTTAGGCAACCCCAACCTTGTCCACGCTCAGAGCATCCTAGCAGTTCTTGGCTCCCAGGTCCTTCTCATGGGACTTGTTGAGGGATTCAGAATCAACGGCCTAGACGGAGTTGGAGAGGGCAATGATCTGTACCCCGGCGGCCAATACTTTGACCCACTGGGCCTTGCTGATGACCCTGCCACATTTGCTGAGCTCAAGGTGAAAGAGATCAAGAATGGGAGACTAGCCATGTTCGCCATGTTTGGTTTCTTTGTCCAAGCCATTGTCACTGGTAAAGGTCCCCTAGAGAACGTCTTGGACCATCTTGACAACCCTGTAGCCAACAATGCTTGGGTCTACGCCACCAAGTTTGTGCCTGGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

259

Amino Acids

27.99

Weight (kDa)

4.89

Isoelectric Point (pI)

19.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chloroa_b-bind PF00504 58 - 226 6.5e-52 Chlorophyll A-B binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 750
AciI CCGC 3 cut(s) 219, 283, 552
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 2 cut(s) 146, 545
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 2 cut(s) 355, 373
AjnI CCWGG 3 cut(s) 91, 468, 769
AluBI AGCT 3 cut(s) 33, 233, 607
AluI AGCT 3 cut(s) 33, 233, 607
Alw21I GWGCWC 1 cut(s) 609
Alw26I GTCTC 1 cut(s) 628
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 5 cut(s) 3, 243, 511, 553, 574
ApeKI GCWGC 2 cut(s) 20, 309
ApoI RAATTY 1 cut(s) 191
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspS9I GGNCC 7 cut(s) 89, 128, 152, 472, 574, 692, 712
AsuC2I CCSGG 3 cut(s) 198, 379, 549
AsuHPI GGTGA 5 cut(s) 175, 212, 307, 352, 625
AsuNHI GCTAGC 1 cut(s) 29
AvaII GGWCC 6 cut(s) 89, 128, 152, 472, 692, 712
BanII GRGCYC 3 cut(s) 265, 385, 609
Bbv12I GWGCWC 1 cut(s) 609
BbvI GCAGC 2 cut(s) 32, 296
BccI CCATC 2 cut(s) 204, 723
BceAI ACGGC 1 cut(s) 526
BciT130I CCWGG 3 cut(s) 93, 470, 771
BcnI CCSGG 3 cut(s) 198, 379, 549
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 5 cut(s) 30, 452, 515, 638, 698
BfmI CTRYAG 1 cut(s) 729
BisI GCNGC 3 cut(s) 21, 310, 553
BlpI GCTNAGC 1 cut(s) 603
BlsI GCNGC 3 cut(s) 22, 311, 554
BmcAI AGTACT 1 cut(s) 146
Bme1390I CCNGG 6 cut(s) 93, 198, 379, 470, 549, 771
Bme18I GGWCC 6 cut(s) 89, 128, 152, 472, 692, 712
BmgT120I GGNCC 7 cut(s) 89, 128, 152, 472, 574, 692, 712
BmiI GGNNCC 5 cut(s) 90, 153, 154, 466, 694
BmrFI CCNGG 6 cut(s) 93, 198, 379, 470, 549, 771
BmrI ACTGGG 1 cut(s) 581
BmsI GCATC 2 cut(s) 321, 456
BmtI GCTAGC 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 581
BpmI CTGGAG 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 603
BpuEI CTTGAG 3 cut(s) 287, 350, 593
BpuMI CCSGG 3 cut(s) 198, 379, 549
BsaJI CCNNGG 8 cut(s) 84, 92, 105, 196, 277, 378, 468, 547
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 3 cut(s) 362, 576, 688
Bse3DI GCAATG 2 cut(s) 297, 541
BseBI CCWGG 3 cut(s) 93, 470, 771
BseDI CCNNGG 8 cut(s) 84, 92, 105, 196, 277, 378, 468, 547
BseGI GGATG 3 cut(s) 79, 215, 447
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 2 cut(s) 297, 541
BseMII CTCAG 5 cut(s) 179, 398, 408, 455, 594
BseNI ACTGG 3 cut(s) 362, 576, 688
BseXI GCAGC 2 cut(s) 32, 296
BshFI GGCC 5 cut(s) 5, 245, 513, 555, 576
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 4 cut(s) 186, 198, 378, 549
BslFI GGGAC 6 cut(s) 65, 102, 165, 227, 498, 678
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 6 cut(s) 65, 102, 165, 227, 498, 678
BsmI GAATGC 1 cut(s) 302
BsnI GGCC 5 cut(s) 5, 245, 513, 555, 576
Bsp1286I GDGCHC 3 cut(s) 265, 385, 609
Bsp143I GATC 3 cut(s) 538, 621, 773
Bsp1720I GCTNAGC 1 cut(s) 603
Bsp19I CCATGG 2 cut(s) 84, 105
BspACI CCGC 3 cut(s) 219, 283, 552
BspANI GGCC 5 cut(s) 5, 245, 513, 555, 576
BspCNI CTCAG 5 cut(s) 178, 397, 407, 454, 595
BspLI GGNNCC 5 cut(s) 90, 153, 154, 466, 694
BspOI GCTAGC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 297, 541
BsrI ACTGG 3 cut(s) 362, 576, 688
BssECI CCNNGG 8 cut(s) 84, 92, 105, 196, 277, 378, 468, 547
BssMI GATC 3 cut(s) 538, 621, 773
BssT1I CCWWGG 2 cut(s) 84, 105
Bst2UI CCWGG 3 cut(s) 93, 470, 771
Bst6I CTCTTC 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 8 cut(s) 47, 68, 165, 252, 384, 394, 441, 603
BstDSI CCRYGG 3 cut(s) 84, 105, 277
BstF5I GGATG 3 cut(s) 79, 215, 447
BstKTI GATC 3 cut(s) 541, 624, 776
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 3 cut(s) 538, 621, 773
BstMWI GCNNNNNNNGC 4 cut(s) 26, 599, 647, 740
BstNI CCWGG 3 cut(s) 93, 470, 771
BstSCI CCNGG 6 cut(s) 91, 196, 377, 468, 547, 769
BstSFI CTRYAG 1 cut(s) 729
BstV1I GCAGC 2 cut(s) 32, 296
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 5 cut(s) 5, 245, 513, 555, 576
BtgI CCRYGG 3 cut(s) 84, 105, 277
BtsCI GGATG 3 cut(s) 79, 215, 447
BtsIMutI CAGTG 2 cut(s) 569, 681
Cac8I GCNNGC 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 26
Cfr13I GGNCC 7 cut(s) 89, 128, 152, 472, 574, 692, 712
Csp6I GTAC 2 cut(s) 145, 544
CspCI CAANNNNNGTGG 2 cut(s) 745, 780
CviAII CATG 6 cut(s) 10, 85, 106, 481, 643, 652
CviQI GTAC 2 cut(s) 145, 544
DdeI CTNAG 8 cut(s) 47, 68, 165, 252, 384, 394, 441, 603
DpnI GATC 3 cut(s) 540, 623, 775
DpnII GATC 3 cut(s) 538, 621, 773
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 607
Eco130I CCWWGG 2 cut(s) 84, 105
Eco147I AGGCCT 1 cut(s) 245
Eco24I GRGCYC 3 cut(s) 265, 385, 609
Eco47I GGWCC 6 cut(s) 89, 128, 152, 472, 692, 712
Eco53kI GAGCTC 1 cut(s) 607
EcoICRI GAGCTC 1 cut(s) 607
EcoO109I RGGNCCY 4 cut(s) 89, 152, 472, 692
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 3 cut(s) 91, 468, 769
EcoT14I CCWWGG 2 cut(s) 84, 105
EcoT38I GRGCYC 3 cut(s) 265, 385, 609
ErhI CCWWGG 2 cut(s) 84, 105
FaeI CATG 6 cut(s) 13, 88, 109, 484, 646, 655
FaiI YATR 9 cut(s) 11, 17, 86, 107, 126, 178, 482, 644, 653
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 6 cut(s) 65, 102, 165, 227, 498, 678
FatI CATG 6 cut(s) 9, 84, 105, 480, 642, 651
FblI GTMKAC 1 cut(s) 750
Fnu4HI GCNGC 3 cut(s) 21, 310, 553
FokI GGATG 3 cut(s) 86, 222, 434
FriOI GRGCYC 3 cut(s) 265, 385, 609
Fsp4HI GCNGC 3 cut(s) 21, 310, 553
FspBI CTAG 5 cut(s) 30, 452, 515, 638, 698
GluI GCNGC 3 cut(s) 21, 310, 553
GsuI CTGGAG 1 cut(s) 19
HaeIII GGCC 5 cut(s) 5, 245, 513, 555, 576
HapII CCGG 4 cut(s) 186, 198, 378, 549
Hin1II CATG 6 cut(s) 13, 88, 109, 484, 646, 655
HinfI GANTC 3 cut(s) 169, 498, 504
HpaII CCGG 4 cut(s) 186, 198, 378, 549
HphI GGTGA 5 cut(s) 175, 212, 307, 352, 625
Hpy166II GTNNAC 3 cut(s) 349, 436, 751
Hpy188I TCNGA 6 cut(s) 168, 299, 387, 397, 444, 503
Hpy188III TCNNGA 5 cut(s) 266, 329, 407, 625, 719
Hpy8I GTNNAC 3 cut(s) 349, 436, 751
HpyAV CCTTC 3 cut(s) 183, 392, 485
HpyCH4IV ACGT 1 cut(s) 705
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 599, 647, 740
HpyF3I CTNAG 8 cut(s) 47, 68, 165, 252, 384, 394, 441, 603
HpySE526I ACGT 1 cut(s) 705
Hsp92II CATG 6 cut(s) 13, 88, 109, 484, 646, 655
KflI GGGWCCC 1 cut(s) 152
Kzo9I GATC 3 cut(s) 538, 621, 773
LmnI GCTCC 3 cut(s) 38, 299, 470
Lsp1109I GCAGC 2 cut(s) 32, 296
LweI GCATC 2 cut(s) 321, 456
MaeI CTAG 5 cut(s) 30, 452, 515, 638, 698
MaeII ACGT 1 cut(s) 705
MaeIII GTNAC 2 cut(s) 200, 679
MalI GATC 3 cut(s) 540, 623, 775
MboI GATC 3 cut(s) 538, 621, 773
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 3 cut(s) 265, 385, 609
MluCI AATT 1 cut(s) 191
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 2 cut(s) 84, 505
MnlI CCTC 6 cut(s) 16, 191, 235, 262, 487, 523
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 4 cut(s) 186, 198, 378, 549
MspR9I CCNGG 6 cut(s) 93, 198, 379, 470, 549, 771
Mva1269I GAATGC 1 cut(s) 302
MvaI CCWGG 3 cut(s) 93, 470, 771
MwoI GCNNNNNNNGC 4 cut(s) 26, 599, 647, 740
NciI CCSGG 3 cut(s) 198, 379, 549
NcoI CCATGG 2 cut(s) 84, 105
NdeII GATC 3 cut(s) 538, 621, 773
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 6 cut(s) 13, 88, 109, 484, 646, 655
NlaIV GGNNCC 5 cut(s) 90, 153, 154, 466, 694
NmuCI GTSAC 2 cut(s) 200, 679
PceI AGGCCT 1 cut(s) 245
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 498, 504
PkrI GCNGC 3 cut(s) 22, 311, 554
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PpuMI RGGWCCY 4 cut(s) 89, 152, 472, 692
Psp124BI GAGCTC 1 cut(s) 609
Psp5II RGGWCCY 4 cut(s) 89, 152, 472, 692
Psp6I CCWGG 3 cut(s) 91, 468, 769
PspGI CCWGG 3 cut(s) 91, 468, 769
PspN4I GGNNCC 5 cut(s) 90, 153, 154, 466, 694
PspPI GGNCC 7 cut(s) 89, 128, 152, 472, 574, 692, 712
PspPPI RGGWCCY 4 cut(s) 89, 152, 472, 692
PstNI CAGNNNCTG 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 2 cut(s) 146, 545
RsaNI GTAC 2 cut(s) 145, 544
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 609
SatI GCNGC 3 cut(s) 21, 310, 553
Sau3AI GATC 3 cut(s) 538, 621, 773
Sau96I GGNCC 7 cut(s) 89, 128, 152, 472, 574, 692, 712
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 6 cut(s) 93, 198, 379, 470, 549, 771
SduI GDGCHC 3 cut(s) 265, 385, 609
SfaNI GCATC 2 cut(s) 321, 456
SfcI CTRYAG 1 cut(s) 729
SinI GGWCC 6 cut(s) 89, 128, 152, 472, 692, 712
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 3 cut(s) 266, 329, 608
SmoI CTYRAG 3 cut(s) 266, 329, 608
Sse9I AATT 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 3 cut(s) 219, 283, 552
SspMI CTAG 5 cut(s) 30, 452, 515, 638, 698
SstI GAGCTC 1 cut(s) 609
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 6 cut(s) 91, 196, 377, 468, 547, 769
StyI CCWWGG 2 cut(s) 84, 105
TaiI ACGT 1 cut(s) 708
TasI AATT 1 cut(s) 191
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 2 cut(s) 498, 504
TscAI CASTG 2 cut(s) 576, 688
TseFI GTSAC 2 cut(s) 200, 679
TseI GCWGC 2 cut(s) 20, 309
Tsp45I GTSAC 2 cut(s) 200, 679
TspDTI ATGAA 1 cut(s) 165
TspGWI ACGGA 2 cut(s) 222, 534
TspRI CASTG 2 cut(s) 576, 688
VpaK11BI GGWCC 6 cut(s) 89, 128, 152, 472, 692, 712
XapI RAATTY 1 cut(s) 191
XmiI GTMKAC 1 cut(s) 750
XspI CTAG 5 cut(s) 30, 452, 515, 638, 698
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.