Rw6G021090
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000240
Physical Location & Seq
Reverse (-)
42137251 .. 42140670
3420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G021090.1

Sequence Viewer

Length: 951 bp
ATGGGAAAGAAGAAATCCACCAATACCGAAACTGAGGGATCTGGAAAACAAAAGGCCACATGGCCTGATGAGGTAGTAGCTATATTTTGTGATATAGCTGCTAAGGAAGTGGCCAAAGGAAACAGGCCCGGTACACATTTTGATAAAAAGGGATGGACAAATGTTGTGTTAGCATTTAAGGAGTTAACCGGAAGGGATTATGATAAAAAGCAATTGAAAAATAAATGGGATTCGCTTAAAACTGATTGGAAATTGTGGAGTTCGCTGTTGCATAAGGAAACTGGTATTGGATGGGATCCGGCTAGGAATACTGTCGATGCACCGGCTGAATGGTGGGAAACCAAAATCCAGATCAATCCAGAATATCGCAAATTTCGCGACGTGGGAATTAGTCCTGACATGATGGCTATCTATGATAACATGTTCAAGGGTAGCACAGCCCTAGGTCATAATGTCATGATTCCCTCAGAAACTATAGATATTGAAGAGGTTGTGGAGGATTCTGAGCATAATATTATTTCTGGAGATGATAAAGAGGATTATGAGCAAGGTAATGAATGTAGAGGGAAAAAGAGAACATCTGTGGAGCACCAAACAGAGGCTGATAAAGAGAAAAAAGGAAAAGGAGTTATGGGAGGGCCAAAGGGGAAGAAAGAAAAGGTGGGAGGTGCGGCCAAATTGTCTAAACAAATCGATCGGCTTGTTGATGTAGTCGAGAGTAGGAGTACAGCCACCTCTGTTCGTGATAATGGTACCTCCAATGGAACTAGTATACAGGAGGTGATGAAAGTTGTTGCAACATTACCAGGAGCAGAAACTGGTACCAAGTTATGGTGGTTTGCAACGGAGCTGTTCTGCTCTCAAGAGAAGCGAGAGATGTTTTCTATTATGACAGATGTTGACCTCAAGATCCAGTTTCTGATTCTTAATCAGAAAAAAGCTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

316

Amino Acids

35.5

Weight (kDa)

6.57

Isoelectric Point (pI)

26.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 21 - 113 5.1e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 752, 821
AccB1I GGYRCC 2 cut(s) 752, 821
AccB7I CCANNNNNTGG 1 cut(s) 831
AccI GTMKAC 1 cut(s) 772
AccII CGCG 1 cut(s) 378
AciI CCGC 1 cut(s) 671
AclWI GGATC 4 cut(s) 46, 290, 303, 904
AcoI YGGCCR 2 cut(s) 111, 672
AcsI RAATTY 1 cut(s) 371
AfaI GTAC 4 cut(s) 133, 727, 754, 823
AfiI CCNNNNNNNGG 2 cut(s) 598, 831
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 3 cut(s) 217, 427, 485
AhlI ACTAGT 1 cut(s) 767
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 805
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 4 cut(s) 80, 98, 850, 941
AluI AGCT 4 cut(s) 80, 98, 850, 941
Alw21I GWGCWC 1 cut(s) 591
AlwI GGATC 4 cut(s) 46, 290, 303, 904
AlwNI CAGNNNCTG 3 cut(s) 602, 818, 919
AoxI GGCC 6 cut(s) 54, 62, 111, 125, 638, 672
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 371
Asp718I GGTACC 2 cut(s) 752, 821
AspA2I CCTAGG 1 cut(s) 442
AspS9I GGNCC 2 cut(s) 126, 638
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 793
AvrII CCTAGG 1 cut(s) 442
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 2 cut(s) 752, 821
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 1 cut(s) 85
BccI CCATC 3 cut(s) 147, 285, 397
BciT130I CCWGG 1 cut(s) 807
BcnI CCSGG 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 3 cut(s) 303, 443, 768
BfmI CTRYAG 1 cut(s) 474
BisI GCNGC 2 cut(s) 99, 672
BlnI CCTAGG 1 cut(s) 442
BlsI GCNGC 2 cut(s) 100, 673
Bme1390I CCNGG 2 cut(s) 129, 807
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 126, 638
BmiI GGNNCC 3 cut(s) 297, 754, 823
BmrFI CCNGG 2 cut(s) 129, 807
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 2 cut(s) 846, 890
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 407
BsaJI CCNNGG 1 cut(s) 442
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 831
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 3 cut(s) 286, 823, 913
Bse8I GATNNNNATC 1 cut(s) 407
BseBI CCWGG 1 cut(s) 807
BseCI ATCGAT 1 cut(s) 693
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 2 cut(s) 158, 296
BseJI GATNNNNATC 1 cut(s) 407
BseLI CCNNNNNNNGG 2 cut(s) 598, 831
BseMII CTCAG 3 cut(s) 24, 480, 495
BseNI ACTGG 3 cut(s) 286, 823, 913
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 378
Bsh1285I CGRYCG 1 cut(s) 697
BshFI GGCC 6 cut(s) 56, 64, 113, 127, 640, 674
BshNI GGYRCC 2 cut(s) 752, 821
BshVI ATCGAT 1 cut(s) 693
BsiEI CGRYCG 1 cut(s) 697
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 4 cut(s) 129, 189, 299, 323
BslI CCNNNNNNNGG 2 cut(s) 598, 831
BsnI GGCC 6 cut(s) 56, 64, 113, 127, 640, 674
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 5 cut(s) 38, 295, 351, 694, 909
Bsp68I TCGCGA 1 cut(s) 378
BspACI CCGC 1 cut(s) 671
BspANI GGCC 6 cut(s) 56, 64, 113, 127, 640, 674
BspCNI CTCAG 3 cut(s) 25, 479, 496
BspDI ATCGAT 1 cut(s) 693
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 3 cut(s) 297, 754, 823
BspPI GGATC 4 cut(s) 46, 290, 303, 904
BspT107I GGYRCC 2 cut(s) 752, 821
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 3 cut(s) 286, 823, 913
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 442
BssMI GATC 5 cut(s) 38, 295, 351, 694, 909
BssNAI GTATAC 1 cut(s) 773
BssT1I CCWWGG 1 cut(s) 442
Bst1107I GTATAC 1 cut(s) 773
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 480
BstDEI CTNAG 4 cut(s) 33, 102, 466, 504
BstF5I GGATG 2 cut(s) 158, 296
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 5 cut(s) 41, 298, 354, 697, 912
BstMBI GATC 5 cut(s) 38, 295, 351, 694, 909
BstMCI CGRYCG 1 cut(s) 697
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 807
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 2 cut(s) 127, 805
BstSFI CTRYAG 1 cut(s) 474
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 3 cut(s) 38, 295, 909
BstYI RGATCY 3 cut(s) 38, 295, 909
BstZ17I GTATAC 1 cut(s) 773
Bsu15I ATCGAT 1 cut(s) 693
BsuRI GGCC 6 cut(s) 56, 64, 113, 127, 640, 674
BsuTUI ATCGAT 1 cut(s) 693
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 158, 296
BtuMI TCGCGA 1 cut(s) 378
CaiI CAGNNNCTG 3 cut(s) 602, 818, 919
CciI TCATGA 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 126, 638
ClaI ATCGAT 1 cut(s) 693
Csp6I GTAC 4 cut(s) 132, 726, 753, 822
CviAII CATG 4 cut(s) 60, 400, 421, 457
CviQI GTAC 4 cut(s) 132, 726, 753, 822
DdeI CTNAG 4 cut(s) 33, 102, 466, 504
DpnI GATC 5 cut(s) 40, 297, 353, 696, 911
DpnII GATC 5 cut(s) 38, 295, 351, 694, 909
EaeI YGGCCR 2 cut(s) 111, 672
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 805
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 4 cut(s) 63, 403, 424, 460
FatI CATG 4 cut(s) 59, 399, 420, 456
FblI GTMKAC 1 cut(s) 772
Fnu4HI GCNGC 2 cut(s) 99, 672
FokI GGATG 2 cut(s) 165, 303
Fsp4HI GCNGC 2 cut(s) 99, 672
FspBI CTAG 3 cut(s) 303, 443, 768
GluI GCNGC 2 cut(s) 99, 672
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 6 cut(s) 56, 64, 113, 127, 640, 674
HapII CCGG 4 cut(s) 129, 189, 299, 323
Hin1II CATG 4 cut(s) 63, 403, 424, 460
HincII GTYRAC 2 cut(s) 186, 901
HindII GTYRAC 2 cut(s) 186, 901
HinfI GANTC 4 cut(s) 230, 460, 500, 922
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 4 cut(s) 129, 189, 299, 323
HphI GGTGA 1 cut(s) 793
Hpy166II GTNNAC 4 cut(s) 134, 186, 773, 901
Hpy188I TCNGA 4 cut(s) 469, 505, 921, 933
Hpy8I GTNNAC 4 cut(s) 134, 186, 773, 901
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 4 cut(s) 271, 320, 797, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 4 cut(s) 33, 102, 466, 504
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 4 cut(s) 63, 403, 424, 460
KpnI GGTACC 2 cut(s) 756, 825
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 5 cut(s) 38, 295, 351, 694, 909
LmnI GCTCC 3 cut(s) 586, 809, 847
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 1 cut(s) 307
MaeI CTAG 3 cut(s) 303, 443, 768
MaeII ACGT 1 cut(s) 381
MalI GATC 5 cut(s) 40, 297, 353, 696, 911
MboI GATC 5 cut(s) 38, 295, 351, 694, 909
MboII GAAGA 3 cut(s) 22, 497, 661
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 3 cut(s) 38, 295, 909
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 6 cut(s) 212, 251, 371, 387, 677, 946
MluNI TGGCCA 1 cut(s) 113
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 5 cut(s) 177, 185, 237, 927, 949
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 4 cut(s) 129, 189, 299, 323
MspR9I CCNGG 2 cut(s) 129, 807
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 807
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 375
NciI CCSGG 1 cut(s) 129
NdeII GATC 5 cut(s) 38, 295, 351, 694, 909
NlaIII CATG 4 cut(s) 63, 403, 424, 460
NlaIV GGNNCC 3 cut(s) 297, 754, 823
NruI TCGCGA 1 cut(s) 378
NspI RCATGY 1 cut(s) 424
PagI TCATGA 1 cut(s) 456
PciI ACATGT 1 cut(s) 420
PfeI GAWTC 4 cut(s) 230, 460, 500, 922
PflMI CCANNNNNTGG 1 cut(s) 831
PkrI GCNGC 2 cut(s) 100, 673
Ple19I CGATCG 1 cut(s) 697
PscI ACATGT 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 805
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 3 cut(s) 297, 754, 823
PspPI GGNCC 2 cut(s) 126, 638
PstNI CAGNNNCTG 3 cut(s) 602, 818, 919
PsuI RGATCY 3 cut(s) 38, 295, 909
PvuI CGATCG 1 cut(s) 697
RruI TCGCGA 1 cut(s) 378
RsaI GTAC 4 cut(s) 133, 727, 754, 823
RsaNI GTAC 4 cut(s) 132, 726, 753, 822
SaqAI TTAA 5 cut(s) 177, 185, 237, 927, 949
SatI GCNGC 2 cut(s) 99, 672
Sau3AI GATC 5 cut(s) 38, 295, 351, 694, 909
Sau96I GGNCC 2 cut(s) 126, 638
ScrFI CCNGG 2 cut(s) 129, 807
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 861, 905
SmoI CTYRAG 2 cut(s) 861, 905
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 6 cut(s) 212, 251, 371, 387, 677, 946
SsiI CCGC 1 cut(s) 671
SspI AATATT 1 cut(s) 514
SspMI CTAG 3 cut(s) 303, 443, 768
StyD4I CCNGG 2 cut(s) 127, 805
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 384
TaqI TCGA 3 cut(s) 315, 693, 714
TasI AATT 6 cut(s) 212, 251, 371, 387, 677, 946
TatI WGTACW 1 cut(s) 725
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 4 cut(s) 230, 460, 500, 922
Tru1I TTAA 5 cut(s) 177, 185, 237, 927, 949
Tru9I TTAA 5 cut(s) 177, 185, 237, 927, 949
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 570, 800
TspGWI ACGGA 1 cut(s) 860
Van91I CCANNNNNTGG 1 cut(s) 831
XapI RAATTY 1 cut(s) 371
XceI RCATGY 1 cut(s) 424
XmaJI CCTAGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 772
XspI CTAG 3 cut(s) 303, 443, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.