Rmu_sc0001759.1_g000017
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001759.1
OG0000240
Physical Location & Seq
Reverse (-)
66492 .. 69304
2813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001759.1_g000017.1.cds

Sequence Viewer

Length: 882 bp
atgaaaaataaatgggattccctcaaagatcattggaaattatggaaagatttgaagggaaaagagaccggtcttgggtgggatcacaagcgtcaaactatagatgcatccgctgagtggtggcgcctcaagattgagaaaaacaaggaatatggaaagttaaagaaaaagggaattgcacccgattttgaagacaagttggataagatgttcatgggtatttcagccactggtcagcatgcatattcaccatcttctgcactacctatccctacaagtccacagcaaggtaacaatgaggtgaaccttgaaggtagtggtgactctgaggacaatgatgatttggcccccactctgcctaaaaaaaaaagaaatgagagagctgagaaaggtaaaggagtagtaccaaaaaaagaaaaggtgggaggtgctgctcatttggctaaacaaattaatcgaatgtgtgaggcaattgagagtaggagcacaggaacttccatgatcaataaaagtgtagaaggtggagccactagtattaaggacgtgatgaaggatgtcacctcattgcctggtatcgagcagggacagggatgtggaattaggtcagtagcagaacgatttcaacattctaatgaaactgtttctagatatttaggaaaagcactagatcatgtgtgtaaactaggtaaacgtataatgagaccttcggagaatgaatttaatggtgttgcaccggagatcataagggataacagatacatgcctcattttaaggaaattgaagcaaatgagaagcatagatatcaactccaacttgaggaggccattagtaacaatggcaacaaaacttgcgcattcttagccaacacaggctattggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

293

Amino Acids

32.9

Weight (kDa)

9.12

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 123
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 716
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 4 cut(s) 75, 117, 287, 817
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 5 cut(s) 55, 191, 311, 623, 782
AhlI ACTAGT 1 cut(s) 530
AjiI CACGTC 1 cut(s) 544
AjnI CCWGG 1 cut(s) 568
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 2 cut(s) 59, 694
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 2 cut(s) 345, 822
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 1 cut(s) 716
AseI ATTAAT 1 cut(s) 453
AsiGI ACCGGT 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 2 cut(s) 126, 854
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 4 cut(s) 240, 313, 332, 550
BanI GGYRCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 418
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 570
BclI TGATCA 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 59, 694
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 4 cut(s) 531, 645, 665, 683
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 570
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 3 cut(s) 125, 348, 526
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 2 cut(s) 94, 116
BpiI GAAGAC 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 113, 836
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 2 cut(s) 59, 694
BsaWI WCCGGW 2 cut(s) 68, 733
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 117, 287, 817
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 563
BseBI CCWGG 1 cut(s) 570
BseGI GGATG 3 cut(s) 107, 559, 596
BseLI CCNNNNNNNGG 4 cut(s) 75, 117, 287, 817
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 3 cut(s) 105, 318, 375
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 2 cut(s) 347, 824
BshNI GGYRCC 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 488
BsiSI CCGG 2 cut(s) 69, 734
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 4 cut(s) 75, 117, 287, 817
BsmAI GTCTC 2 cut(s) 59, 694
BsmFI GGGAC 1 cut(s) 597
BsmI GAATGC 1 cut(s) 854
BsnI GGCC 2 cut(s) 347, 824
Bso31I GGTCTC 2 cut(s) 59, 694
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 5 cut(s) 28, 82, 501, 667, 738
BspACI CCGC 1 cut(s) 111
BspANI GGCC 2 cut(s) 347, 824
BspCNI CTCAG 3 cut(s) 106, 319, 376
BspLI GGNNCC 3 cut(s) 125, 348, 526
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 2 cut(s) 59, 694
BsrDI GCAATG 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 68
BssMI GATC 5 cut(s) 28, 82, 501, 667, 738
BssNI GRCGYC 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 1 cut(s) 640
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 4 cut(s) 114, 327, 384, 859
BstF5I GGATG 3 cut(s) 107, 559, 596
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 126, 854
BstKTI GATC 5 cut(s) 31, 85, 504, 670, 741
BstMAI GTCTC 2 cut(s) 59, 694
BstMBI GATC 5 cut(s) 28, 82, 501, 667, 738
BstMWI GCNNNNNNNGC 2 cut(s) 440, 860
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 2 cut(s) 242, 763
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 198
BsuRI GGCC 2 cut(s) 347, 824
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 3 cut(s) 107, 559, 596
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 240
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 2 cut(s) 126, 854
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 346
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 404
CspAI ACCGGT 1 cut(s) 68
CviAII CATG 5 cut(s) 214, 239, 499, 671, 760
CviJI RGCY 8 cut(s) 227, 347, 383, 443, 527, 824, 863, 873
CviKI_1 RGCY 8 cut(s) 227, 347, 383, 443, 527, 824, 863, 873
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 4 cut(s) 114, 327, 384, 859
DinI GGCGCC 1 cut(s) 125
DpnI GATC 5 cut(s) 30, 84, 503, 669, 740
DpnII GATC 5 cut(s) 28, 82, 501, 667, 738
Eco31I GGTCTC 2 cut(s) 59, 694
Eco32I GATATC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 568
EcoRV GATATC 1 cut(s) 803
EcoT22I ATGCAT 2 cut(s) 109, 244
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
FaeI CATG 5 cut(s) 217, 242, 502, 674, 763
FaqI GGGAC 1 cut(s) 597
FatI CATG 5 cut(s) 213, 238, 498, 670, 759
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 3 cut(s) 94, 566, 603
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 4 cut(s) 531, 645, 665, 683
FspI TGCGCA 1 cut(s) 853
GlaI GCGC 2 cut(s) 125, 853
GluI GCNGC 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 2 cut(s) 347, 824
HapII CCGG 2 cut(s) 69, 734
HgaI GACGC 1 cut(s) 80
HhaI GCGC 2 cut(s) 126, 854
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 5 cut(s) 217, 242, 502, 674, 763
Hin6I GCGC 2 cut(s) 124, 852
HinP1I GCGC 2 cut(s) 124, 852
HinfI GANTC 2 cut(s) 17, 323
HpaII CCGG 2 cut(s) 69, 734
HphI GGTGA 4 cut(s) 240, 313, 332, 550
Hpy166II GTNNAC 4 cut(s) 281, 304, 680, 689
Hpy188I TCNGA 2 cut(s) 328, 709
Hpy188III TCNNGA 2 cut(s) 130, 645
Hpy8I GTNNAC 4 cut(s) 281, 304, 680, 689
HpyAV CCTTC 5 cut(s) 49, 305, 512, 544, 714
HpyCH4III ACNGT 1 cut(s) 640
HpyCH4IV ACGT 2 cut(s) 543, 691
HpyCH4V TGCA 5 cut(s) 107, 179, 242, 260, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 860
HpyF3I CTNAG 4 cut(s) 114, 327, 384, 859
HpySE526I ACGT 2 cut(s) 543, 691
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 5 cut(s) 217, 242, 502, 674, 763
HspAI GCGC 2 cut(s) 124, 852
KasI GGCGCC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 5 cut(s) 28, 82, 501, 667, 738
LmnI GCTCC 2 cut(s) 483, 524
LpnPI CCDG 9 cut(s) 82, 216, 474, 555, 566, 572, 582, 747, 855
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 2 cut(s) 94, 116
MaeI CTAG 4 cut(s) 531, 645, 665, 683
MaeII ACGT 2 cut(s) 543, 691
MaeIII GTNAC 4 cut(s) 290, 320, 556, 830
MalI GATC 5 cut(s) 30, 84, 503, 669, 740
MboI GATC 5 cut(s) 28, 82, 501, 667, 738
MboII GAAGA 2 cut(s) 203, 246
MfeI CAATTG 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 488
MluCI AATT 7 cut(s) 38, 174, 450, 471, 597, 716, 777
Mly113I GGCGCC 1 cut(s) 124
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 180, 835
Mph1103I ATGCAT 2 cut(s) 109, 244
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 5 cut(s) 161, 453, 537, 720, 771
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 2 cut(s) 69, 734
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 854
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 440, 860
NarI GGCGCC 1 cut(s) 124
NdeII GATC 5 cut(s) 28, 82, 501, 667, 738
NlaIII CATG 5 cut(s) 217, 242, 502, 674, 763
NlaIV GGNNCC 3 cut(s) 125, 348, 526
NmuCI GTSAC 2 cut(s) 320, 556
NsbI TGCGCA 1 cut(s) 853
NsiI ATGCAT 2 cut(s) 109, 244
NspI RCATGY 2 cut(s) 242, 763
PaeI GCATGC 1 cut(s) 242
PctI GAATGC 1 cut(s) 854
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 1 cut(s) 433
PleI GAGTC 1 cut(s) 317
PluTI GGCGCC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 125, 348, 526
PspPI GGNCC 1 cut(s) 346
PstNI CAGNNNCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 5 cut(s) 161, 453, 537, 720, 771
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 5 cut(s) 28, 82, 501, 667, 738
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 488
SfaNI GCATC 2 cut(s) 94, 116
SfcI CTRYAG 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 128, 815
SmoI CTYRAG 2 cut(s) 128, 815
SpeI ACTAGT 1 cut(s) 530
SphI GCATGC 1 cut(s) 242
Sse9I AATT 7 cut(s) 38, 174, 450, 471, 597, 716, 777
SsiI CCGC 1 cut(s) 111
SspDI GGCGCC 1 cut(s) 123
SspMI CTAG 4 cut(s) 531, 645, 665, 683
StyD4I CCNGG 1 cut(s) 568
TaaI ACNGT 1 cut(s) 640
TaiI ACGT 2 cut(s) 546, 694
TaqI TCGA 2 cut(s) 457, 576
TasI AATT 7 cut(s) 38, 174, 450, 471, 597, 716, 777
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 5 cut(s) 161, 453, 537, 720, 771
Tru9I TTAA 5 cut(s) 161, 453, 537, 720, 771
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 2 cut(s) 320, 556
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 2 cut(s) 320, 556
TspDTI ATGAA 5 cut(s) 17, 202, 563, 648, 729
TspRI CASTG 1 cut(s) 235
VspI ATTAAT 1 cut(s) 453
XapI RAATTY 1 cut(s) 716
XbaI TCTAGA 1 cut(s) 644
XceI RCATGY 2 cut(s) 242, 763
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 4 cut(s) 531, 645, 665, 683
Zsp2I ATGCAT 2 cut(s) 109, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.