FvH4_7g12221
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000240
Physical Location & Seq
Forward (+)
11093721 .. 11094504
784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12221.t1

Sequence Viewer

Length: 696 bp
ATGAAAAACAAGTGGGATAACCTTAAAGAGCAGTGGAAACTATGGAAAGACTTGAAGGGTAAACAGACCGGTCTTGGTTGGGATCACAGGCTCCAGACTATAGATGCATCCGAAGATTGGTGGCGTGAGAAAATCAAGGAGAACAAGGAGTATGCTAAGTTACAGAAAAAAGGAATTACACCTGAGTTTGAAGACAAGTTGGATAAGTTATTTTCAGGAGTTGTAGCCACCGGTAGGTATGCTTGTACACCAGGTTCTTCACTACCTCAACCAACAAGTCCGGTTCACTGTGACAATGAACAAGACCTTGAAGAAAGTGGTGATTCATACGATATTCAGCCTACATCTACCCAAGGTATAAGAAAAAGAAGTGAGAGAATTGAAAAAGGTAAGGGAGTGGCTGTAAAAAAAGGGAAGGTGGGAGGTGCTGCTCTTCTGGCTACCAAAATTGATAGAATGTGTGAGGCAATTGAGAGCAGAAGTACCGCAACTTCAATTGCTAAGGGAGGCGCTAGCATCAAAGATCTGATGAAGGATGTTACTTCGTTGCCGGGTGGCGAGCCTTGTTCTCCATTGTGGTTCTTTGCCACGGATTTGTTTGTGTGCCAAGAGAAAAGAGAGATGTTTAGCACTATGGAAGATATTAACACGAGGTTGGCGTGGCTGCAATATGAGATGAGCAAATTAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

232

Amino Acids

26.13

Weight (kDa)

8.66

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 1 - 43 2.9e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 486
AclWI GGATC 1 cut(s) 90
AfaI GTAC 2 cut(s) 247, 484
AfiI CCNNNNNNNGG 2 cut(s) 117, 234
AgeI ACCGGT 2 cut(s) 68, 230
AgsI TTSAA 5 cut(s) 55, 191, 311, 383, 495
AjnI CCWGG 1 cut(s) 250
AlwI GGATC 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 428, 664
AsiGI ACCGGT 2 cut(s) 68, 230
AspLEI GCGC 1 cut(s) 512
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 332
AsuNHI GCTAGC 1 cut(s) 512
BarI GAAGNNNNNNTAC 2 cut(s) 475, 507
BauI CACGAG 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 415, 651
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 552
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 513
BglII AGATCT 1 cut(s) 523
BisI GCNGC 2 cut(s) 429, 665
BlsI GCNGC 2 cut(s) 430, 666
Bme1390I CCNGG 2 cut(s) 252, 552
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 252, 552
BmsI GCATC 3 cut(s) 94, 116, 525
BmtI GCTAGC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 501
BpuMI CCSGG 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 352, 588
BsaWI WCCGGW 3 cut(s) 68, 230, 280
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 234
Bse118I RCCGGY 2 cut(s) 68, 230
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 352, 588
BseGI GGATG 2 cut(s) 107, 541
BseLI CCNNNNNNNGG 2 cut(s) 117, 234
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 415, 651
BshTI ACCGGT 2 cut(s) 68, 230
BsiSI CCGG 4 cut(s) 69, 231, 281, 551
BslI CCNNNNNNNGG 2 cut(s) 117, 234
Bsp1407I TGTACA 1 cut(s) 245
Bsp143I GATC 2 cut(s) 82, 523
BspACI CCGC 1 cut(s) 486
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 516
BspPI GGATC 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 438
BsrFI RCCGGY 2 cut(s) 68, 230
BsrGI TGTACA 1 cut(s) 245
BssAI RCCGGY 2 cut(s) 68, 230
BssECI CCNNGG 2 cut(s) 352, 588
BssMI GATC 2 cut(s) 82, 523
BssSI CACGAG 1 cut(s) 649
BssT1I CCWWGG 1 cut(s) 352
Bst2BI CACGAG 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 438
BstAUI TGTACA 1 cut(s) 245
BstC8I GCNNGC 2 cut(s) 514, 560
BstDEI CTNAG 3 cut(s) 156, 183, 501
BstDSI CCRYGG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 107, 541
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 2 cut(s) 85, 526
BstMBI GATC 2 cut(s) 82, 523
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 250, 550
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 415, 651
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BtgI CCRYGG 1 cut(s) 588
BtsCI GGATG 2 cut(s) 107, 541
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 38, 286
Cac8I GCNNGC 2 cut(s) 514, 560
CfoI GCGC 1 cut(s) 512
Cfr10I RCCGGY 2 cut(s) 68, 230
CsiI ACCWGGT 1 cut(s) 250
Csp6I GTAC 2 cut(s) 246, 483
CspAI ACCGGT 2 cut(s) 68, 230
CviJI RGCY 7 cut(s) 91, 227, 340, 401, 440, 562, 664
CviKI_1 RGCY 7 cut(s) 91, 227, 340, 401, 440, 562, 664
CviQI GTAC 2 cut(s) 246, 483
DdeI CTNAG 3 cut(s) 156, 183, 501
DpnI GATC 2 cut(s) 84, 525
DpnII GATC 2 cut(s) 82, 523
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 352
FaiI YATR 8 cut(s) 43, 101, 153, 240, 328, 359, 635, 672
Fnu4HI GCNGC 2 cut(s) 429, 665
FokI GGATG 2 cut(s) 94, 548
Fsp4HI GCNGC 2 cut(s) 429, 665
FspBI CTAG 1 cut(s) 513
GlaI GCGC 1 cut(s) 511
GluI GCNGC 2 cut(s) 429, 665
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 513
HapII CCGG 4 cut(s) 69, 231, 281, 551
HhaI GCGC 1 cut(s) 512
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HinfI GANTC 1 cut(s) 323
HpaII CCGG 4 cut(s) 69, 231, 281, 551
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 3 cut(s) 62, 248, 286
Hpy188I TCNGA 2 cut(s) 112, 528
Hpy188III TCNNGA 2 cut(s) 94, 216
Hpy8I GTNNAC 3 cut(s) 62, 248, 286
HpyAV CCTTC 3 cut(s) 49, 409, 526
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4V TGCA 2 cut(s) 107, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 3 cut(s) 156, 183, 501
HspAI GCGC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 82, 523
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 96
Lsp1109I GCAGC 2 cut(s) 415, 651
LweI GCATC 3 cut(s) 94, 116, 525
MabI ACCWGGT 1 cut(s) 250
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 3 cut(s) 159, 290, 538
MalI GATC 2 cut(s) 84, 525
MboI GATC 2 cut(s) 82, 523
MboII GAAGA 6 cut(s) 125, 203, 249, 323, 425, 650
MfeI CAATTG 2 cut(s) 468, 495
MflI RGATCY 1 cut(s) 523
MluCI AATT 6 cut(s) 174, 378, 447, 468, 495, 683
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 5 cut(s) 276, 416, 457, 500, 645
Mph1103I ATGCAT 1 cut(s) 109
MseI TTAA 3 cut(s) 24, 645, 686
MspI CCGG 4 cut(s) 69, 231, 281, 551
MspR9I CCNGG 2 cut(s) 252, 552
MunI CAATTG 2 cut(s) 468, 495
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 437
NciI CCSGG 1 cut(s) 552
NdeII GATC 2 cut(s) 82, 523
NheI GCTAGC 1 cut(s) 512
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 438
PcsI WCGNNNNNNNCGW 1 cut(s) 656
PfeI GAWTC 1 cut(s) 323
PinAI ACCGGT 2 cut(s) 68, 230
PkrI GCNGC 2 cut(s) 430, 666
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 92
PsrI GAACNNNNNNTAC 2 cut(s) 238, 270
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 2 cut(s) 247, 484
RsaNI GTAC 2 cut(s) 246, 483
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 3 cut(s) 24, 645, 686
SatI GCNGC 2 cut(s) 429, 665
Sau3AI GATC 2 cut(s) 82, 523
ScrFI CCNGG 2 cut(s) 252, 552
SexAI ACCWGGT 1 cut(s) 250
SfaNI GCATC 3 cut(s) 94, 116, 525
SfcI CTRYAG 1 cut(s) 99
Sse9I AATT 6 cut(s) 174, 378, 447, 468, 495, 683
SsiI CCGC 1 cut(s) 486
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 250, 550
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 1 cut(s) 290
TasI AATT 6 cut(s) 174, 378, 447, 468, 495, 683
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 3 cut(s) 24, 645, 686
Tru9I TTAA 3 cut(s) 24, 645, 686
TscAI CASTG 2 cut(s) 38, 293
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 2 cut(s) 428, 664
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 4 cut(s) 17, 312, 315, 545
TspGWI ACGGA 1 cut(s) 605
TspRI CASTG 2 cut(s) 38, 293
XspI CTAG 1 cut(s) 513
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.