Rmu_sc0003855.1_g000002
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003855.1
OG0000240
Physical Location & Seq
Reverse (-)
9045 .. 10478
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003855.1_g000002.1.cds

Sequence Viewer

Length: 798 bp
atgggaaagaagaaatccaccaataccgaatctgacggatctggaaaacaaaaggccacatggcatgttgaggttgtagctatattttgtgatatagctgttaaggaagtggccaaaggaaacaggcccggtacacattttgataaaaagggatggacaaatgttgtgttagcctttaaggagttaaccggaagggattatgataaaaagcaattgaaaaataaatgggattcgcttaaaaatgattggaaattgtggagttcgctgttgcataaggaaactggtattggatgggatccggctaggaagactgtcgatgcaccggctgaatggtgggaaaccaaaattctgatcaatccagagtatcgcaaatttcgcgaagtgggagttagtcctgacatgatggctgtctatgataacatgttcaaggagggaaaaagagaacaagtggagcgccaaacagaggctgataaagataaaaaaggaaaaggagttatgggagggccaaaggggaagaaagaaaaggtgggagctgcggccaaattgtctaaacaaatcgatcgggttgttgatgtagtcgagagtaggagtacagccacctttgttcgtgataatggtacctcacatggaactagtattcaggaggtgatgaaagttgtagcaacattaccaggagcagaaactggtaccaagttatggtggtttgcaacggagttgttctgctctcaagagaagcgagagatgttttctattatgacagatgttgatctcaagctccagtttctgattcttaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

265

Amino Acids

30.02

Weight (kDa)

9.31

Isoelectric Point (pI)

22.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 617, 686
AccB1I GGYRCC 2 cut(s) 617, 686
AccB7I CCANNNNNTGG 1 cut(s) 696
AccII CGCG 1 cut(s) 378
AciI CCGC 1 cut(s) 536
AclWI GGATC 3 cut(s) 46, 290, 303
AcoI YGGCCR 2 cut(s) 111, 537
AcsI RAATTY 2 cut(s) 345, 371
AfaI GTAC 4 cut(s) 133, 592, 619, 688
AfiI CCNNNNNNNGG 2 cut(s) 463, 696
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 2 cut(s) 217, 427
AhlI ACTAGT 1 cut(s) 632
AjnI CCWGG 1 cut(s) 670
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 4 cut(s) 80, 98, 533, 775
AluI AGCT 4 cut(s) 80, 98, 533, 775
AlwI GGATC 3 cut(s) 46, 290, 303
AlwNI CAGNNNCTG 3 cut(s) 467, 683, 784
AoxI GGCC 5 cut(s) 54, 111, 125, 503, 537
ApeKI GCWGC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 345, 371
Asp718I GGTACC 2 cut(s) 617, 686
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 2 cut(s) 126, 503
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 658
BalI TGGCCA 1 cut(s) 113
BamHI GGATCC 1 cut(s) 295
BanI GGYRCC 2 cut(s) 617, 686
BbsI GAAGAC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 520
BccI CCATC 3 cut(s) 147, 285, 397
BciT130I CCWGG 1 cut(s) 672
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 2 cut(s) 303, 633
BfoI RGCGCY 1 cut(s) 457
BisI GCNGC 2 cut(s) 534, 537
BlsI GCNGC 2 cut(s) 535, 538
Bme1390I CCNGG 2 cut(s) 129, 672
BmgT120I GGNCC 2 cut(s) 126, 503
BmiI GGNNCC 3 cut(s) 297, 619, 688
BmrFI CCNGG 2 cut(s) 129, 672
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 761
BpuEI CTTGAG 2 cut(s) 711, 755
BpuMI CCSGG 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 765
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 696
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 3 cut(s) 286, 688, 778
Bse8I GATNNNNATC 1 cut(s) 765
BseBI CCWGG 1 cut(s) 672
BseCI ATCGAT 1 cut(s) 558
BseGI GGATG 2 cut(s) 158, 296
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 2 cut(s) 463, 696
BseNI ACTGG 3 cut(s) 286, 688, 778
BseXI GCAGC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 378
Bsh1285I CGRYCG 1 cut(s) 562
BshFI GGCC 5 cut(s) 56, 113, 127, 505, 539
BshNI GGYRCC 2 cut(s) 617, 686
BshVI ATCGAT 1 cut(s) 558
BsiEI CGRYCG 1 cut(s) 562
BsiSI CCGG 4 cut(s) 129, 189, 299, 323
BslI CCNNNNNNNGG 2 cut(s) 463, 696
BsnI GGCC 5 cut(s) 56, 113, 127, 505, 539
Bsp143I GATC 5 cut(s) 38, 295, 351, 559, 766
Bsp68I TCGCGA 1 cut(s) 378
BspACI CCGC 1 cut(s) 536
BspANI GGCC 5 cut(s) 56, 113, 127, 505, 539
BspDI ATCGAT 1 cut(s) 558
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 3 cut(s) 297, 619, 688
BspPI GGATC 3 cut(s) 46, 290, 303
BspT107I GGYRCC 2 cut(s) 617, 686
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 3 cut(s) 286, 688, 778
BssAI RCCGGY 1 cut(s) 322
BssMI GATC 5 cut(s) 38, 295, 351, 559, 766
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 1 cut(s) 313
BstF5I GGATG 2 cut(s) 158, 296
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 457
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 5 cut(s) 41, 298, 354, 562, 769
BstMBI GATC 5 cut(s) 38, 295, 351, 559, 766
BstMCI CGRYCG 1 cut(s) 562
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 2 cut(s) 68, 424
BstSCI CCNGG 2 cut(s) 127, 670
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 314
BstX2I RGATCY 2 cut(s) 38, 295
BstYI RGATCY 2 cut(s) 38, 295
Bsu15I ATCGAT 1 cut(s) 558
BsuRI GGCC 5 cut(s) 56, 113, 127, 505, 539
BsuTUI ATCGAT 1 cut(s) 558
BtsCI GGATG 2 cut(s) 158, 296
BtuMI TCGCGA 1 cut(s) 378
CaiI CAGNNNCTG 3 cut(s) 467, 683, 784
CfoI GCGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 126, 503
ClaI ATCGAT 1 cut(s) 558
Csp6I GTAC 4 cut(s) 132, 591, 618, 687
CviAII CATG 5 cut(s) 60, 65, 400, 421, 626
CviQI GTAC 4 cut(s) 132, 591, 618, 687
DpnI GATC 5 cut(s) 40, 297, 353, 561, 768
DpnII GATC 5 cut(s) 38, 295, 351, 559, 766
EaeI YGGCCR 2 cut(s) 111, 537
EcoRII CCWGG 1 cut(s) 670
FaeI CATG 5 cut(s) 63, 68, 403, 424, 629
FatI CATG 5 cut(s) 59, 64, 399, 420, 625
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 2 cut(s) 534, 537
FokI GGATG 2 cut(s) 165, 303
Fsp4HI GCNGC 2 cut(s) 534, 537
FspBI CTAG 2 cut(s) 303, 633
GlaI GCGC 1 cut(s) 455
GluI GCNGC 2 cut(s) 534, 537
GsuI CTGGAG 1 cut(s) 761
HaeII RGCGCY 1 cut(s) 457
HaeIII GGCC 5 cut(s) 56, 113, 127, 505, 539
HapII CCGG 4 cut(s) 129, 189, 299, 323
HhaI GCGC 1 cut(s) 456
Hin1II CATG 5 cut(s) 63, 68, 403, 424, 629
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 3 cut(s) 29, 230, 787
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 4 cut(s) 129, 189, 299, 323
HphI GGTGA 1 cut(s) 658
Hpy166II GTNNAC 2 cut(s) 134, 186
Hpy188I TCNGA 3 cut(s) 34, 351, 786
Hpy188III TCNNGA 8 cut(s) 42, 359, 377, 395, 580, 608, 641, 728
Hpy8I GTNNAC 2 cut(s) 134, 186
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 271, 320, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
Hsp92II CATG 5 cut(s) 63, 68, 403, 424, 629
HspAI GCGC 1 cut(s) 454
KpnI GGTACC 2 cut(s) 621, 690
Ksp22I TGATCA 1 cut(s) 351
KspAI GTTAAC 1 cut(s) 186
Kzo9I GATC 5 cut(s) 38, 295, 351, 559, 766
LmnI GCTCC 4 cut(s) 451, 530, 674, 780
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 303, 633
MalI GATC 5 cut(s) 40, 297, 353, 561, 768
MboI GATC 5 cut(s) 38, 295, 351, 559, 766
MboII GAAGA 3 cut(s) 22, 319, 526
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 2 cut(s) 38, 295
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 6 cut(s) 212, 251, 345, 371, 542, 793
MluNI TGGCCA 1 cut(s) 113
MnlI CCTC 6 cut(s) 64, 424, 457, 494, 631, 637
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 5 cut(s) 102, 177, 185, 237, 792
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 4 cut(s) 129, 189, 299, 323
MspR9I CCNGG 2 cut(s) 129, 672
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 375
NciI CCSGG 1 cut(s) 129
NdeII GATC 5 cut(s) 38, 295, 351, 559, 766
NlaIII CATG 5 cut(s) 63, 68, 403, 424, 629
NlaIV GGNNCC 3 cut(s) 297, 619, 688
NruI TCGCGA 1 cut(s) 378
NspI RCATGY 2 cut(s) 68, 424
PciI ACATGT 1 cut(s) 420
PfeI GAWTC 3 cut(s) 29, 230, 787
PflMI CCANNNNNTGG 1 cut(s) 696
PkrI GCNGC 2 cut(s) 535, 538
Ple19I CGATCG 1 cut(s) 562
PscI ACATGT 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 3 cut(s) 297, 619, 688
PspPI GGNCC 2 cut(s) 126, 503
PstNI CAGNNNCTG 3 cut(s) 467, 683, 784
PsuI RGATCY 2 cut(s) 38, 295
PvuI CGATCG 1 cut(s) 562
RruI TCGCGA 1 cut(s) 378
RsaI GTAC 4 cut(s) 133, 592, 619, 688
RsaNI GTAC 4 cut(s) 132, 591, 618, 687
SaqAI TTAA 5 cut(s) 102, 177, 185, 237, 792
SatI GCNGC 2 cut(s) 534, 537
Sau3AI GATC 5 cut(s) 38, 295, 351, 559, 766
Sau96I GGNCC 2 cut(s) 126, 503
ScrFI CCNGG 2 cut(s) 129, 672
SetI ASST 9 cut(s) 75, 82, 100, 528, 535, 602, 623, 648, 777
SfaNI GCATC 1 cut(s) 307
SmlI CTYRAG 2 cut(s) 726, 770
SmoI CTYRAG 2 cut(s) 726, 770
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 6 cut(s) 212, 251, 345, 371, 542, 793
SsiI CCGC 1 cut(s) 536
SspMI CTAG 2 cut(s) 303, 633
StyD4I CCNGG 2 cut(s) 127, 670
TaaI ACNGT 1 cut(s) 313
TaqI TCGA 3 cut(s) 315, 558, 579
TasI AATT 6 cut(s) 212, 251, 345, 371, 542, 793
TatI WGTACW 1 cut(s) 590
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 3 cut(s) 29, 230, 787
Tru1I TTAA 5 cut(s) 102, 177, 185, 237, 792
Tru9I TTAA 5 cut(s) 102, 177, 185, 237, 792
TseI GCWGC 1 cut(s) 533
TspDTI ATGAA 1 cut(s) 665
TspGWI ACGGA 2 cut(s) 51, 725
Van91I CCANNNNNTGG 1 cut(s) 696
XapI RAATTY 2 cut(s) 345, 371
XceI RCATGY 2 cut(s) 68, 424
XspI CTAG 2 cut(s) 303, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.