FvH4_5g23913
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000240
Physical Location & Seq
Reverse (-)
15214575 .. 15217256
2682 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23913.t2

Sequence Viewer

Length: 867 bp
ATGGGCTCGGCCGTTTGGAATGAGGCATTAGTAGATGTACTTTGTGACTTATGTATCAAGGAGGTGGAAAAAAATAATCGTCCAAATACCCATCTTAACAAAGATGGATGGGAAAATGTGCTAAGTAATTTTCACAAAGAAACGGGTAAAAATTACACCAAAAAACAACTAAAAAATAAATGGGATGCACTTAAAGAGCAATGGAAATTATGGAAAGATTTGAAGGGGAAAGAGACTGGTCTTGGATGGGATCATAGGCTCCAAACCATTGACGCATCTGATGAGTGGTGGAGTGGAAAAATTAAGGACAATAAGGAATATGCAAAGTTAAGAAAAAAAGGTATTCACCCTGATTTTGAAGAGAAATTGGACAGAATGTTTAAGGGGACTTCAGCCACCGGTATGTATGCTTATATACCAGGTGCATCACCACCTTTGCCTGAAAGTCCAAACCAAGGGGAAAATCAGCAAAACCTTGAAGAGAGTTCTAATTCTGAAGATACATCACACCCTACTAAAAGAAGAAAAGGAAATGCAGTTGGGAAAGGCAAAGGTGTTGTTACAAAACCTGGAAGGGTAGGAGGTGCTGCTCTTTTAGCACAAAAAATTGACCGAATGTGTGAGGCTATTGAGAGTAGAAGTACAGCAAGTTCTATGATCAATAAGAGTGTAGAAACAAGTGATGACACTAGTATTAAAGAAGTGATGAAGGTGGTCAGTTCTTTACCTGGGGCCGAGCAGGGTACTAAGATATTTTTTTTTGCAAGTCGGTTGTTCCTAAATAAAGAGAAGAGGGAGATGTTTTGCTGTATGGAAGGTCCTCACATGAAGTTGGAGTATTTGAAATTTGAGATGGCTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

289

Amino Acids

32.61

Weight (kDa)

8.76

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 6 - 98 1.7e-22 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000240)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11300
fragaria_vesca FvH4_1g19130 FvH4_1g28413 FvH4_2g11122 FvH4_3g19652 FvH4_3g29921 FvH4_4g07761 FvH4_4g20923 FvH4_5g23913 FvH4_5g23913 FvH4_6g38850 FvH4_6g39920 FvH4_6g53022 FvH4_7g00070 FvH4_7g08972 FvH4_7g12221
malus_domestica MD06G1090800.v1.1 MD15G1314200.v1.1 MD16G1231800.v1.1
prunus_persica Prupe.1G173000_v2.0.a1 Prupe.4G113600_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G020800_v2.0.a1 Prupe.5G207000_v2.0.a1 Prupe.6G155900_v2.0.a1 Prupe.8G016500_v2.0.a1
pyrus_communis pycom03g16230 pycom04g16130 pycom05g03970 pycom05g10500 pycom08g06480 pycom08g11770 pycom12g11350 pycom12g18510 pycom13g02550 pycom13g13780 pycom13g27450 pycom13g27460 pycom15g26130 pycom15g27470
rosa_chinensis RchiOBHm_Chr2g0103961 RchiOBHm_Chr2g0128681 RchiOBHm_Chr2g0153151 RchiOBHm_Chr3g0459461 RchiOBHm_Chr4g0406011 RchiOBHm_Chr4g0428601 RchiOBHm_Chr5g0029731 RchiOBHm_Chr5g0069971 RchiOBHm_Chr6g0253171 RchiOBHm_Chr6g0254701 RchiOBHm_Chr7g0199281
rosa_laevigata RLG00000002281 RLG00000007586 RLG00000008509 RLG00000008888 RLG00000009501 RLG00000012763
rosa_multiflora Rmu_sc0000008.1_g000009 Rmu_sc0000079.1_g000058 Rmu_sc0000117.1_g000008 Rmu_sc0000151.1_g000009 Rmu_sc0000166.1_g000053 Rmu_sc0000240.1_g000064 Rmu_sc0000435.1_g000013 Rmu_sc0000552.1_g000019 Rmu_sc0000776.1_g000078 Rmu_sc0001597.1_g000012 Rmu_sc0001759.1_g000017 Rmu_sc0002137.1_g000011 Rmu_sc0002933.1_g000006 Rmu_sc0002938.1_g000049 Rmu_sc0003257.1_g000014 Rmu_sc0003465.1_g000054 Rmu_sc0003505.1_g000025 Rmu_sc0003526.1_g000016 Rmu_sc0003829.1_g000021 Rmu_sc0003855.1_g000002 Rmu_sc0005514.1_g000003 Rmu_sc0005514.1_g000004 Rmu_sc0007820.1_g000001 Rmu_sc0008322.1_g000016 Rmu_sc0008636.1_g000003 Rmu_sc0008812.1_g000009 Rmu_sc0010960.1_g000003 Rmu_sc0011753.1_g000001 Rmu_sc0013017.1_g000001 Rmu_sc0013176.1_g000005 Rmu_sc0015928.1_g000001 Rmu_sc0020751.1_g000003 Rmu_sc0038865.1_g000001 Rmu_ssc0000089.1_g000008 Rmu_ssc0000164.1_g000007 Rmu_ssc0000388.1_g000013 Rmu_ssc0000400.1_g000076 Rmu_ssc0000486.1_g000012
rosa_roxburghii Rroxscaffold_1G00005880 Rroxscaffold_1G00051030 Rroxscaffold_2G00107440 Rroxscaffold_2G00115370 Rroxscaffold_2G00115870 Rroxscaffold_2G00146360 Rroxscaffold_3G00228870 Rroxscaffold_3G00230350 Rroxscaffold_3G00246190 Rroxscaffold_6G00423350 Rroxscaffold_7G00157820 Rroxscaffold_7G00184840 Rroxscaffold_7G00186490
rosa_rugosa Rorug02G0248700 Rorug02G0279900 Rorug02G0285600 Rorug02G0285700 Rorug03G0068700 Rorug03G0077100 Rorug03G0247700 Rorug03G0304800 Rorug04G0059600 Rorug05G0104000 Rorug05G0104000 Rorug05G0192000 Rorug05G0247800 Rorug05G0248000 Rorug06G0064100 Rorug06G0244800
rosa_samantha Rh4BG200400 Rh4CG094600 Rh4CG114400 Rh5BG465300 Rh6AG057500
rosa_wichuraiana Rw1G014470 Rw2G026930 Rw5G042730 Rw6G021090 Rw6G022960 Rw6G025470 Rw6G034450 Rw7G034300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 845
AcuI CTGAAG 2 cut(s) 375, 516
AfaI GTAC 3 cut(s) 39, 643, 745
AfiI CCNNNNNNNGG 1 cut(s) 455
AgeI ACCGGT 1 cut(s) 398
AgsI TTSAA 4 cut(s) 223, 359, 479, 844
AhlI ACTAGT 1 cut(s) 689
AjnI CCWGG 3 cut(s) 418, 568, 727
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 258
AoxI GGCC 2 cut(s) 9, 732
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 1 cut(s) 845
AsiGI ACCGGT 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 732, 818
AsuHPI GGTGA 2 cut(s) 338, 420
AvaII GGWCC 1 cut(s) 818
BaeI ACNNNNGTAYC 2 cut(s) 37, 70
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 574
BccI CCATC 5 cut(s) 98, 99, 102, 240, 847
BciT130I CCWGG 3 cut(s) 420, 570, 729
BclI TGATCA 1 cut(s) 657
BcoDI GTCTC 1 cut(s) 227
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 1 cut(s) 690
BisI GCNGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 589
Bme1390I CCNGG 3 cut(s) 420, 570, 729
Bme18I GGWCC 1 cut(s) 818
BmgT120I GGNCC 2 cut(s) 732, 818
BmiI GGNNCC 2 cut(s) 260, 733
BmrFI CCNGG 3 cut(s) 420, 570, 729
BmsI GCATC 3 cut(s) 175, 284, 434
BsaJI CCNNGG 2 cut(s) 454, 728
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 206
BseBI CCWGG 3 cut(s) 420, 570, 729
BseDI CCNNGG 2 cut(s) 454, 728
BseGI GGATG 3 cut(s) 113, 190, 251
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMI GCAATG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 241
BseX3I CGGCCG 1 cut(s) 9
BseXI GCAGC 1 cut(s) 574
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 11, 734
BshTI ACCGGT 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 12
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 400
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 400
BsnI GGCC 2 cut(s) 11, 734
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 250, 657
BspANI GGCC 2 cut(s) 11, 734
BspLI GGNNCC 2 cut(s) 260, 733
BspPI GGATC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 454, 728
BssMI GATC 2 cut(s) 250, 657
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 3 cut(s) 420, 570, 729
Bst6I CTCTTC 3 cut(s) 354, 474, 785
BstDEI CTNAG 2 cut(s) 122, 747
BstF5I GGATG 3 cut(s) 113, 190, 251
BstKTI GATC 2 cut(s) 253, 660
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 250, 657
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 596
BstNI CCWGG 3 cut(s) 420, 570, 729
BstSCI CCNGG 3 cut(s) 418, 568, 727
BstV1I GCAGC 1 cut(s) 574
BstZI CGGCCG 1 cut(s) 9
BsuRI GGCC 2 cut(s) 11, 734
BtsCI GGATG 3 cut(s) 113, 190, 251
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 2 cut(s) 732, 818
CseI GACGC 1 cut(s) 281
CsiI ACCWGGT 1 cut(s) 418
Csp6I GTAC 3 cut(s) 38, 642, 744
CspAI ACCGGT 1 cut(s) 398
CviAII CATG 1 cut(s) 826
CviJI RGCY 7 cut(s) 6, 11, 259, 395, 626, 734, 857
CviKI_1 RGCY 7 cut(s) 6, 11, 259, 395, 626, 734, 857
CviQI GTAC 3 cut(s) 38, 642, 744
DdeI CTNAG 2 cut(s) 122, 747
DpnI GATC 2 cut(s) 252, 659
DpnII GATC 2 cut(s) 250, 657
EaeI YGGCCR 1 cut(s) 9
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 354, 474, 785
EarI CTCTTC 3 cut(s) 354, 474, 785
EclXI CGGCCG 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 818
Eco52I CGGCCG 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 375, 516
EcoO109I RGGNCCY 1 cut(s) 818
EcoRII CCWGG 3 cut(s) 418, 568, 727
EcoT14I CCWWGG 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 1 cut(s) 829
FaqI GGGAC 1 cut(s) 400
FatI CATG 1 cut(s) 825
FbaI TGATCA 1 cut(s) 657
Fnu4HI GCNGC 1 cut(s) 588
FokI GGATG 3 cut(s) 120, 197, 258
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 1 cut(s) 690
GluI GCNGC 1 cut(s) 588
HaeIII GGCC 2 cut(s) 11, 734
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 829
HpaII CCGG 1 cut(s) 399
HphI GGTGA 2 cut(s) 338, 420
Hpy188I TCNGA 2 cut(s) 280, 496
HpyAV CCTTC 4 cut(s) 217, 567, 703, 809
HpyCH4V TGCA 5 cut(s) 188, 323, 425, 536, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 596
HpyF3I CTNAG 2 cut(s) 122, 747
Hsp92II CATG 1 cut(s) 829
Ksp22I TGATCA 1 cut(s) 657
Kzo9I GATC 2 cut(s) 250, 657
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 3 cut(s) 175, 284, 434
MabI ACCWGGT 1 cut(s) 418
MaeI CTAG 1 cut(s) 690
MaeIII GTNAC 2 cut(s) 44, 559
MalI GATC 2 cut(s) 252, 659
MboI GATC 2 cut(s) 250, 657
MboII GAAGA 5 cut(s) 371, 491, 509, 534, 802
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 9 cut(s) 127, 151, 206, 300, 365, 490, 606, 845, 862
MmeI TCCRAC 1 cut(s) 813
MnlI CCTC 6 cut(s) 16, 55, 575, 616, 786, 831
MseI TTAA 7 cut(s) 96, 192, 303, 329, 381, 696, 865
MslI CAYNNNNRTG 1 cut(s) 401
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 3 cut(s) 420, 570, 729
MvaI CCWGG 3 cut(s) 420, 570, 729
MwoI GCNNNNNNNGC 1 cut(s) 596
NdeII GATC 2 cut(s) 250, 657
NlaIII CATG 1 cut(s) 829
NlaIV GGNNCC 2 cut(s) 260, 733
NmeAIII GCCGAG 1 cut(s) 760
NmuCI GTSAC 1 cut(s) 44
PinAI ACCGGT 1 cut(s) 398
PkrI GCNGC 1 cut(s) 589
PpuMI RGGWCCY 1 cut(s) 818
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 3 cut(s) 418, 568, 727
PspGI CCWGG 3 cut(s) 418, 568, 727
PspN4I GGNNCC 2 cut(s) 260, 733
PspPI GGNCC 2 cut(s) 732, 818
PspPPI RGGWCCY 1 cut(s) 818
PsrI GAACNNNNNNTAC 2 cut(s) 634, 666
RsaI GTAC 3 cut(s) 39, 643, 745
RsaNI GTAC 3 cut(s) 38, 642, 744
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 7 cut(s) 96, 192, 303, 329, 381, 696, 865
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 2 cut(s) 250, 657
Sau96I GGNCC 2 cut(s) 732, 818
ScrFI CCNGG 3 cut(s) 420, 570, 729
SduI GDGCHC 1 cut(s) 8
SexAI ACCWGGT 1 cut(s) 418
SfaNI GCATC 3 cut(s) 175, 284, 434
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 401
SpeI ACTAGT 1 cut(s) 689
Sse9I AATT 9 cut(s) 127, 151, 206, 300, 365, 490, 606, 845, 862
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 3 cut(s) 418, 568, 727
StyI CCWWGG 1 cut(s) 454
TaqII GACCGA 1 cut(s) 627
TasI AATT 9 cut(s) 127, 151, 206, 300, 365, 490, 606, 845, 862
TatI WGTACW 2 cut(s) 37, 641
Tru1I TTAA 7 cut(s) 96, 192, 303, 329, 381, 696, 865
Tru9I TTAA 7 cut(s) 96, 192, 303, 329, 381, 696, 865
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 722, 842
VpaK11BI GGWCC 1 cut(s) 818
XapI RAATTY 1 cut(s) 845
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.